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Volumn 18, Issue 4, 2010, Pages 449-457

Structure of the RNA 3′-Phosphate Cyclase-Adenylate Intermediate Illuminates Nucleotide Specificity and Covalent Nucleotidyl Transfer

Author keywords

Proteins

Indexed keywords

ADENINE; ADENOSINE PHOSPHATE; AMIDE; HISTIDINE; LYASE; PHOSPHOAMIDE; RIBONUCLEOTIDE; RIBOSE; RNA 3' PHOSPHATE CYCLASE; SULFATE; TYROSINE; UNCLASSIFIED DRUG;

EID: 77951650971     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2010.01.016     Document Type: Article
Times cited : (19)

References (31)
  • 2
    • 0023388202 scopus 로고
    • Bacteriophage T4 anticodon nuclease, polynucleotide kinase, and RNA ligase reprocess the host lysine tRNA
    • Amitsur M., Levitz R., Kaufman G. Bacteriophage T4 anticodon nuclease, polynucleotide kinase, and RNA ligase reprocess the host lysine tRNA. EMBO J. 1987, 6:2499-2503.
    • (1987) EMBO J. , vol.6 , pp. 2499-2503
    • Amitsur, M.1    Levitz, R.2    Kaufman, G.3
  • 3
    • 0033521092 scopus 로고    scopus 로고
    • Characterization of the adenylation site in the RNA 3′-terminal phosphate cyclase from Escherichia coli
    • Billy E., Hess D., Hofsteenge J., Filipowicz W. Characterization of the adenylation site in the RNA 3′-terminal phosphate cyclase from Escherichia coli. J. Biol. Chem. 1999, 274:34955-34960.
    • (1999) J. Biol. Chem. , vol.274 , pp. 34955-34960
    • Billy, E.1    Hess, D.2    Hofsteenge, J.3    Filipowicz, W.4
  • 6
    • 0025362610 scopus 로고
    • RNA 3′-terminal cyclase from Hela cells
    • Filipowicz W., Vicente P. RNA 3′-terminal cyclase from Hela cells. Methods Enzymol. 1990, 181:499-510.
    • (1990) Methods Enzymol. , vol.181 , pp. 499-510
    • Filipowicz, W.1    Vicente, P.2
  • 7
    • 0020714001 scopus 로고
    • Origin of splice junction phosphate in tRNAs processed by HeLa cell extract
    • Filipowicz W., Shatkin A.J. Origin of splice junction phosphate in tRNAs processed by HeLa cell extract. Cell 1983, 32:547-557.
    • (1983) Cell , vol.32 , pp. 547-557
    • Filipowicz, W.1    Shatkin, A.J.2
  • 8
    • 0021100686 scopus 로고
    • RNA 3′-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract
    • Filipowicz W., Konarska M., Gross H.J., Shatkin A.J. RNA 3′-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract. Nucleic Acids Res. 1983, 11:1405-1418.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1405-1418
    • Filipowicz, W.1    Konarska, M.2    Gross, H.J.3    Shatkin, A.J.4
  • 9
    • 0021988616 scopus 로고
    • Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3′)pp(5′)A activated intermediate
    • Filipowicz W., Strugala K., Konarska M., Shatkin A.J. Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3′)pp(5′)A activated intermediate. Proc. Natl. Acad. Sci. USA 1985, 8:1316-1320.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.8 , pp. 1316-1320
    • Filipowicz, W.1    Strugala, K.2    Konarska, M.3    Shatkin, A.J.4
  • 10
    • 0033614003 scopus 로고    scopus 로고
    • A detailed structural description of Escherichia coli succinyl-CoA-synthetase
    • Fraser M.E., James M.N.G., Bridger W.A., Wolodko W.T. A detailed structural description of Escherichia coli succinyl-CoA-synthetase. J. Mol. Biol. 1999, 285:1633-1653.
    • (1999) J. Mol. Biol. , vol.285 , pp. 1633-1653
    • Fraser, M.E.1    James, M.N.G.2    Bridger, W.A.3    Wolodko, W.T.4
  • 11
    • 0034705332 scopus 로고    scopus 로고
    • Phosphorylated and dephosphorylated structures of pig heart, GTP-specific succinyl-CoA-synthetase
    • Fraser M.E., James M.N.G., Bridger W.A., Wolodko W.T. Phosphorylated and dephosphorylated structures of pig heart, GTP-specific succinyl-CoA-synthetase. J. Mol. Biol. 2000, 299:1325-1339.
    • (2000) J. Mol. Biol. , vol.299 , pp. 1325-1339
    • Fraser, M.E.1    James, M.N.G.2    Bridger, W.A.3    Wolodko, W.T.4
  • 12
    • 0030926016 scopus 로고    scopus 로고
    • The human RNA 3′-terminal phosphate cyclase is a member of a new family of protein conserved in eukarya, bacteria and archaea
    • Genschik P., Billy E., Swianiewicz M., Filipowicz W. The human RNA 3′-terminal phosphate cyclase is a member of a new family of protein conserved in eukarya, bacteria and archaea. EMBO J. 1997, 10:2955-2967.
    • (1997) EMBO J. , vol.10 , pp. 2955-2967
    • Genschik, P.1    Billy, E.2    Swianiewicz, M.3    Filipowicz, W.4
  • 14
    • 0020618208 scopus 로고
    • Mechanism of action of a yeast RNA ligase in tRNA splicing
    • Greer C.L., Peebles C.L., Gegenheimer P., Abelson J. Mechanism of action of a yeast RNA ligase in tRNA splicing. Cell 1983, 32:537-546.
    • (1983) Cell , vol.32 , pp. 537-546
    • Greer, C.L.1    Peebles, C.L.2    Gegenheimer, P.3    Abelson, J.4
  • 16
    • 0007358709 scopus 로고
    • RNA ligation via 2′-phosphomonoester, 3′,5′-phosphodiester linkage: requirement of 2′,3′-cyclic phosphate termini and involvement of a 5′-hydroxyl polynucleotide kinase
    • Konarska M., Filipowicz W., Gross H.J. RNA ligation via 2′-phosphomonoester, 3′,5′-phosphodiester linkage: requirement of 2′,3′-cyclic phosphate termini and involvement of a 5′-hydroxyl polynucleotide kinase. Proc. Natl. Acad. Sci. USA 1982, 79:1474-1478.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 1474-1478
    • Konarska, M.1    Filipowicz, W.2    Gross, H.J.3
  • 17
    • 0021100159 scopus 로고
    • Characterization of tRNA precursor splicing in mammalian extracts
    • Laski F.A., Fire A.Z., RajBhandary U.L., Sharp P.A. Characterization of tRNA precursor splicing in mammalian extracts. J. Biol. Chem. 1983, 258:11974-11980.
    • (1983) J. Biol. Chem. , vol.258 , pp. 11974-11980
    • Laski, F.A.1    Fire, A.Z.2    RajBhandary, U.L.3    Sharp, P.A.4
  • 18
    • 0030831990 scopus 로고    scopus 로고
    • Structure-based analysis of catalysis and substrate definition in the HIT protein family
    • Lima C.D., Klein M.G., Hendrickson W.A. Structure-based analysis of catalysis and substrate definition in the HIT protein family. Science 1997, 278:286-290.
    • (1997) Science , vol.278 , pp. 286-290
    • Lima, C.D.1    Klein, M.G.2    Hendrickson, W.A.3
  • 20
    • 0029154302 scopus 로고
    • Mechanism of phosphate transfer by nucleoside diphosphatekinase: X-ray structures of the phosphohistidine intermediate of the enzymes from Drosophila and Dictyostelium
    • Moréra S., Chiadmi M., LeBras G., Lascu I., Janin J. Mechanism of phosphate transfer by nucleoside diphosphatekinase: X-ray structures of the phosphohistidine intermediate of the enzymes from Drosophila and Dictyostelium. Biochemistry 1995, 34:11062-11070.
    • (1995) Biochemistry , vol.34 , pp. 11062-11070
    • Moréra, S.1    Chiadmi, M.2    LeBras, G.3    Lascu, I.4    Janin, J.5
  • 21
    • 47349097839 scopus 로고    scopus 로고
    • RNA repair: an antidote to cytotoxic eukaryal RNA damage
    • Nandakumar J., Schwer B., Schaffrath R., Shuman S. RNA repair: an antidote to cytotoxic eukaryal RNA damage. Mol. Cell 2008, 31:278-286.
    • (2008) Mol. Cell , vol.31 , pp. 278-286
    • Nandakumar, J.1    Schwer, B.2    Schaffrath, R.3    Shuman, S.4
  • 22
    • 33645158291 scopus 로고    scopus 로고
    • TLSMD web server for the generation of multi-group TLS models
    • Painter J., Merritt E.A. TLSMD web server for the generation of multi-group TLS models. J. Appl. Crystallogr. 2006, 39:109-111.
    • (2006) J. Appl. Crystallogr. , vol.39 , pp. 109-111
    • Painter, J.1    Merritt, E.A.2
  • 23
    • 0034650343 scopus 로고    scopus 로고
    • Crystal structure of RNA 3′-terminal phosphate cyclase, a ubiquitous enzyme with unusual topology
    • Palm G.J., Billy E., Filipowicz W., Wlodawer A. Crystal structure of RNA 3′-terminal phosphate cyclase, a ubiquitous enzyme with unusual topology. Structure 2000, 8:12-23.
    • (2000) Structure , vol.8 , pp. 12-23
    • Palm, G.J.1    Billy, E.2    Filipowicz, W.3    Wlodawer, A.4
  • 24
    • 0001005285 scopus 로고    scopus 로고
    • Ribonuclease A
    • Raines R.T. Ribonuclease A. Chem. Rev. 1998, 98:1045-1065.
    • (1998) Chem. Rev. , vol.98 , pp. 1045-1065
    • Raines, R.T.1
  • 25
    • 0021832279 scopus 로고
    • The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′,3′-cyclic phosphate derivatives
    • Reinberg D., Arenas J., Hurwitz J. The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′,3′-cyclic phosphate derivatives. J. Biol. Chem. 1985, 260:6068-6097.
    • (1985) J. Biol. Chem. , vol.260 , pp. 6068-6097
    • Reinberg, D.1    Arenas, J.2    Hurwitz, J.3
  • 26
    • 70349149888 scopus 로고    scopus 로고
    • Structure-activity relationships in human RNA 3′-phosphate cyclase
    • Tanaka N., Shuman S. Structure-activity relationships in human RNA 3′-phosphate cyclase. RNA 2009, 15:1865-1874.
    • (2009) RNA , vol.15 , pp. 1865-1874
    • Tanaka, N.1    Shuman, S.2
  • 27
    • 0023676446 scopus 로고
    • Purification of RNA 3′-terminal phosphate cyclase from HeLa cells: covalent modification of the enzyme with different nucleotides
    • Vicente O., Filipowicz W. Purification of RNA 3′-terminal phosphate cyclase from HeLa cells: covalent modification of the enzyme with different nucleotides. Eur. J. Biochem. 1988, 176:431-439.
    • (1988) Eur. J. Biochem. , vol.176 , pp. 431-439
    • Vicente, O.1    Filipowicz, W.2
  • 28
    • 0029810819 scopus 로고    scopus 로고
    • The structure of nucleotidylated histidine-166 of galactose-1-uridylyltransferase provides insight into phosphoryl group transfer
    • Wedekind J.E., Frey P.A., Rayment I. The structure of nucleotidylated histidine-166 of galactose-1-uridylyltransferase provides insight into phosphoryl group transfer. Biochemistry 1996, 35:11560-11569.
    • (1996) Biochemistry , vol.35 , pp. 11560-11569
    • Wedekind, J.E.1    Frey, P.A.2    Rayment, I.3
  • 29
    • 0030610719 scopus 로고    scopus 로고
    • 3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP
    • 3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP. Proc. Natl. Acad. Sci. USA 1997, 94:3579-3583.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3579-3583
    • Xu, Y.W.1    Moréra, S.2    Janin, J.3    Cherfils, J.4
  • 30
  • 31
    • 0033913635 scopus 로고    scopus 로고
    • Junction phosphate is derived from the precursor in the tRNA spliced by the archaeon Haloferax volcanii cell extract
    • Zofallova L., Guo Y., Gupta R. Junction phosphate is derived from the precursor in the tRNA spliced by the archaeon Haloferax volcanii cell extract. RNA 2000, 6:1019-1030.
    • (2000) RNA , vol.6 , pp. 1019-1030
    • Zofallova, L.1    Guo, Y.2    Gupta, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.