Branchiostoma floridae has separate healing and sealing enzymes for 5′-phosphate RNA ligation

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 39, 2010, Pages 16834-16839

  Englert, Markus ^a   Sheppard, Kelly ^a   Gundllapalli, Sarath ^a   Beier, Hildburg ^b   Söll, Dieter ^a  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

5' PHOSPHATE; CYCLIC PHOSPHODIESTERASE; PHOSPHATE; PHOSPHODIESTERASE; POLYNUCLEOTIDE 5' HYDROXYL KINASE; RNA LIGASE; TRANSFER RNA; UNCLASSIFIED DRUG;

ADENYLATION; ARTICLE; BRANCHIOSTOMA FLORIDAE; CHORDATA; ENZYME ACTIVITY; ENZYME MECHANISM; ENZYME SPECIFICITY; IN VITRO STUDY; PRIORITY JOURNAL; RNA SPLICING; SACCHAROMYCES CEREVISIAE; ANIMAL; CLASSIFICATION; ENZYMOLOGY; GENETIC COMPLEMENTATION; GENETICS; LETHAL GENE; METABOLISM; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALIA; BRANCHIOSTOMA FLORIDAE; SACCHAROMYCES CEREVISIAE;

ANIMALS; BASE SEQUENCE; CHORDATA; DNA MUTATIONAL ANALYSIS; GENES, LETHAL; GENETIC COMPLEMENTATION TEST; PHYLOGENY; RNA LIGASE (ATP); RNA SPLICING; RNA, TRANSFER; SACCHAROMYCES CEREVISIAE;

EID: 78049291343     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1011703107     Document Type: Article

References (31)

1. Peebles CL, Gegenheimer P, Abelson J (1983) Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32:525-536.
2. FilipowiczW, Shatkin AJ (1983) Origin of splice junction phosphate in tRNAs processed by HeLa cell extract. Cell 32:547-557.
3. Zofallova L, Guo Y, Gupta R (2000) Junction phosphate is derived from the precursor in the tRNA spliced by the archaeon Haloferax volcanii cell extract. RNA 6:1019-1030. (Pubitemid 30471138)
4. Abelson J, Trotta CR, Li H (1998) tRNA splicing. J Biol Chem 273:12685-12688.
5. Schwer B, Sawaya R, Ho CK, Shuman S (2004) Portability and fidelity of RNA-repair systems. Proc Natl Acad Sci USA 101:2788-2793.
6. Phizicky EM, Consaul SA, Nehrke KW, Abelson J (1992) Yeast tRNA ligase mutants are nonviable and accumulate tRNA splicing intermediates. J Biol Chem 267:4577-4582.
7. Wang LK, Schwer B, EnglertM, Beier H, Shuman S (2006) Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog. Nucleic Acids Res 34:517-527. (Pubitemid 43240240)
8. Wang LK, Shuman S (2005) Structure-function analysis of yeast tRNA ligase. RNA 11:966-975.
9. Culver GM, et al. (1993) An NAD derivative produced during transfer RNA splicing: ADP-ribose 1″-2″ cyclic phosphate. Science 261:206-208.
10. McCraith SM, Phizicky EM (1991) An enzyme from Saccharomyces cerevisiae uses NAD+ to transfer the splice junction 2′-phosphate from ligated tRNA to an acceptor molecule. J Biol Chem 266:11986-11992.
11. Spinelli SL, Malik HS, Consaul SA, Phizicky EM (1998) A functional homolog of a yeast tRNA splicing enzyme is conserved in higher eukaryotes and in Escherichia coli. Proc Natl Acad Sci USA 95:14136-14141.
12. Winicov I, Button JD (1982) Nuclear ligation of RNA 5′-OH kinase products in tRNA. Mol Cell Biol 2:241-249.
13. Zillmann M, Gorovsky MA, Phizicky EM (1991) Conserved mechanism of tRNA splicing in eukaryotes. Mol Cell Biol 11:5410-5416. (Pubitemid 21895305)
14. Weitzer S, Martinez J (2007) The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs. Nature 447:222-226. (Pubitemid 46763082)
15. Ramirez A, Shuman S, Schwer B (2008) Human RNA 5′-kinase (hClp1) can function as a tRNA splicing enzyme in vivo. RNA 14:1737-1745.
16. Schwer B, Aronova A, Ramirez A, Braun P, Shuman S (2008) Mammalian 2′3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo. RNA 14:204-210. (Pubitemid 351171580)
17. Phizicky EM, Schwartz RC, Abelson J (1986) Saccharomyces cerevisiae tRNA ligase. Purification of the protein and isolation of the structural gene. J Biol Chem 261:2978-2986. (Pubitemid 17218319)
18. Englert M, Beier H (2005) Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins. Nucleic Acids Res 33:388-399. (Pubitemid 40276959)
19. Shuman S, Lima CD (2004) The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases. Curr Opin Struct Biol 14:757-764. (Pubitemid 39592587)
20. Wang LK, Shuman S (2002) Mutational analysis defines the 5′-kinase and 3′-phosphatase active sites of T4 polynucleotide kinase. Nucleic Acids Res 30:1073-1080.
21. Hofmann A, et al. (2000) Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction. EMBO J 19:6207-6217.
22. Sabaliauskiené V, Jonusiené V, Labeikyté D, Juodka B (2003) Isolation and partial purification of tRNA ligase from Tetrahymena pyriformis. Biologija 2:7-11.
23. Thøgersen HC, Morris HR, Rand KN, GaitMJ (1985) Location of the adenylylation site in T4 RNA ligase. Eur J Biochem 147:325-329.
24. Xu Q, Teplow D, Lee TD, Abelson J (1990) Domain structure in yeast tRNA ligase. Biochemistry 29:6132-6138. (Pubitemid 20222226)
25. Odell M, Sriskanda V, Shuman S, Nikolov DB (2000) Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining. Mol Cell 6:1183-1193.
26. Sawaya R, Schwer B, Shuman S (2003) Genetic and biochemical analysis of the functional domains of yeast tRNA ligase. J Biol Chem 278:43928-43938. (Pubitemid 37377132)
27. Uemura A, Oku M, Mori K, Yoshida H (2009) Unconventional splicing of XBP1 mRNA occurs in the cytoplasm during the mammalian unfolded protein response. J Cell Sci 122:2877-2886.
28. De Robertis EM, Black P, Nishikura K (1981) Intranuclear location of the tRNA splicing enzymes. Cell 23:89-93. (Pubitemid 11173612)
29. Culver GM, McCraith SM, Consaul SA, Stanford DR, Phizicky EM (1997) A 2′-phosphotransferase implicated in tRNA splicing is essential in Saccharomyces cerevisiae. J Biol Chem 272:13203-13210.
30. Harding HP, et al. (2008) An intact unfolded protein response in Trpt1knockout mice reveals phylogenic divergence in pathways for RNA ligation. RNA 14:225-232.
31. Paushkin SV, Patel M, Furia BS, Peltz SW, Trotta CR (2004) Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation. Cell 117:311-321. (Pubitemid 38534538)