Precipitation by lanthanum ions: A straightforward approach to isolating phosphoproteins

Journal of Proteomics

Volumn 75, Issue 2, 2011, Pages 375-383

  Pink, Mario ^a   Verma, Nisha ^a   Polato, Fabio ^b   Bonn, Günther K ^b   Baba, Hideo A ^a   Rettenmeier, Albert W ^a   Schmitz Spanke, Simone ^a  

^a UNIVERSITY HOSPITAL ESSEN   (Germany)

^b UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

2D gel electrophoresis; Lanthanum; MALDI TOF; Phosphoproteomics; Proteomics

Indexed keywords

CASEIN; EDETIC ACID; EGTAZIC ACID; LANTHANUM; LANTHANUM CHLORIDE; PHOSPHOPROTEIN; THIOUREA; UREA;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CELL CULTURE; CYTOLYSIS; EXPERIMENTAL PIG; HUMAN; HUMAN TISSUE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRECIPITATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ISOLATION; TWO DIMENSIONAL ELECTROPHORESIS;

ANIMALS; CATTLE; EGG PROTEINS; LANTHANUM; MILK PROTEINS; PHOSPHOPROTEINS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SWINE;

EID: 82355169633     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.08.001     Document Type: Article

References (35)

1. Eyrich B., Sickmann A., Zahedi R.P. Catch me if you can: mass spectrometry-based phosphoproteomics and quantification strategies. Proteomics 2011, 11(4):554-570.
2. Thingholm T.E., Jensen O.N., Larsen M.R. Analytical strategies for phosphoproteomics. Proteomics 2009, 9(6):1451-1468.
3. Marcus K., Moebius J., Meyer H. Differential analysis of phosphorylated proteins in resting and thrombin-stimulated human platelets. Anal Bioanal Chem 2003, 376(7):973-993.
4. Reinders J., Sickmann A. State-of-the-art in phosphoproteomics. Proteomics 2005, 5(16):4052-4061.
5. Grimsrud P.A., Swaney D.L., Wenger C.D., Beauchene N.A., Coon J.J. Phosphoproteomics for the masses. ACS Chem Biol 2010, 5(1):105-119.
6. Lévine A., Vannier F., Absalon C., Kuhn L., Jackson P., Scrivener E., et al. Analysis of the dynamic Bacillus subtilis Ser/Thr/Tyr phosphoproteome implicated in a wide variety of cellular processes. Proteomics 2006, 6(7):2157-2173.
7. Stasyk T., Morandell S., Bakry R., Feuerstein I., Huck C.W., Stecher G., et al. Quantitative detection of phosphoproteins by combination of two-dimensional difference gel electrophoresis and phosphospecific fluorescent staining. Electrophoresis 2005, 26(14):2850-2854.
8. Wang M., Xiao G.G., Li N., Xie Y., Loo J.A., Nel A.E. Use of a fluorescent phosphoprotein dye to characterize oxidative stress-induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals. Electrophoresis 2005, 26(11):2092-2108.
9. Hopper R.K., Carroll S., Aponte A.M., Johnson D.T., French S., Shen R.F., et al. Mitochondrial matrix phosphoproteome: effect of extra mitochondrial calcium. Biochemistry 2006, 45(8):2524-2536.
10. Kaufmann H., Bailey J.E., Fussenegger M. Use of antibodies for detection of phosphorylated proteins separated by two-dimensional gel electrophoresis. Proteomics 2001, 1(2):194-199.
11. Grønborg M., Kristiansen T.Z., Stensballe A., Andersen J.S., Ohara O., Mann M., et al. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Mol Cell Proteomics 2002, 1(7):517-527.
12. Condina M.R., Guthridge M.A., McColl S.R., Hoffmann P. A sensitive magnetic bead method for the detection and identification of tyrosine phosphorylation in proteins by MALDI-TOF/TOF MS. Proteomics 2009, 9(11):3047-3057.
13. Andersson L. Recognition of phosphate groups by immobilized aluminum(III) ions. J Chromatogr 1991, 539(2):327-334.
14. Andersson L., Porath J. Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal Biochem 1986, 154(1):250-254.
15. Posewitz M.C., Tempst P. Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal Chem 1999, 71(14):2883-2892.
16. Zhou H.J., Ye M.L., Dong J., Han G.H., Jiang X.N., Wu R.N., et al. Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis. J Proteome Res 2008, 7(9):3957-3967.
17. Nonglaton G., Benitez I.O., Guisle I., Pipelier M., Léger J., Dubreuil D., et al. New approach to oligonucleotide microarrays using zirconium phosphonate-modified surfaces. J Am Chem Soc 2004, 126(5):1497-1502.
18. Larsen M.R., Thingholm T.E., Jensen O.N., Roepstorff P., Jørgensen T.J.D. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteomics 2005, 4(7):873-886.
19. Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villén J., Li J.X., et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci U S A 2004, 101(33):12130-12135.
20. Bodenmiller B., Mueller L.N., Mueller M., Domon B., Aebersold R. Reproducible isolation of distinct, overlapping segments of the phosphoproteome. Nat Methods 2007, 4(3):231-237.
21. Qiao L., Roussel C., Wan J., Yang P., Girault H.H., Liu B. Specific on-plate enrichment of phosphorylated peptides for Ddrect MALDI-TOF MS analysis. J Proteome Res 2007, 6(12):4763-4769.
22. Torta F., Fusi M., Casari C.S., Bottani C.E., Bachi A. Titanium dioxide coated MALDI plate for on target analysis of phosphopeptides. J Proteome Res 2009, 8(4):1932-1942.
23. Eriksson A., Bergquist J., Edwards K., Hagfeldt A., Malmström D., Agmo Hernández V.C. Optimized protocol for on-target phosphopeptide enrichment prior to matrix-assisted laser desorption-ionization mass spectrometry using mesoporous titanium dioxide. Anal Chem 2010, 82(11):4577-4583.
24. Xia Q.W., Cheng D.M., Duong D.M., Gearing M., Lah J.J., Levey A.I., et al. Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry. J Proteome Res 2008, 7(7):2845-2851.
25. Zhang X., Ye J.Y., Jensen O.N., Roepstorff P. Highly efficient phosphopeptide enrichment by calcium phosphate precipitation combined with subsequent IMAC enrichment. Mol Cell Proteomics 2007, 6(11):2032-2042.
26. Ruse C.I., McClatchy D.B., Lu B.W., Cociorva D., Motoyama A., Park S.K., et al. Motif-specific sampling of phosphoproteomes. J Proteome Res 2008, 7(5):2140-2150.
27. Bamann E., Trapmann H., Fischler F. Verhalten und Spezifität von Cer und Lanthan als Phosphatase-modelle gegenüber Nucleinsäuren und Mononucleotiden. Biochem Z 1954, 326(2):89-96.
28. Eichhorn G.L., Butzow J.J. Interactions of metal ions with polynucleotides and related compounds. 3. Degradation of polyribonucleotides by lanthanum ions. Biopolymers 1965, 3(1):79-94.
29. Joy M.S., Finn W.F. Randomized, double-blind, placebo-controlled, dose-titration, phase III study assessing the efficacy and tolerability of lanthanum carbonate: a new phosphate binder for the treatment of hyperphosphatemia. Am J Kidney Dis 2003, 42(1):96-107. LAM-302 Study Group.
30. Guhe C., Follmann W. Growth and characterization of porcine urinary bladder epithelial cells in vitro. Am J Physiol 1994, 266(2 Pt 2):F298-F308.
31. Pink M., Verma N., Rettenmeier A.W., Schmitz-Spanke S. CBB staining protocol with higher sensitivity and mass spectrometric compatibility. Electrophoresis 2010, 31(4):593-598.
32. Janeiro-Cinquini T.R.F., Ribolla P.E.M., Capurro M., de L., Winter C.E. Vitellogenin and yolk protein processing in Bothrops jararaca (Wied), a tropical venomous snake. Comp Biochem Physiol B Biochem Mol Biol 1999, 122(2):189-198.
33. Gutierrez R., del Valle E.M.M., Galan M.A. Immobilized metal-ion affinity chromatography: status and trends. Sep Purif Rev 2007, 36(1):71-111.
34. Onoda H., Taniguchi K., Tanaka I. Preparation and acidic properties of nano-porous lanthanum phosphate by the addition of urea. Micropor Mesopor Mater 2008, 109(1-3):193-198.
35. Machida K., Mayer B.J., Nollau P. Profiling the global tyrosine phosphorylation state. Mol Cell Proteomics 2003, 2(4):215-233.