메뉴 건너뛰기




Volumn 4, Issue 3, 2007, Pages 231-237

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHOPEPTIDE; PHOSPHORAMIDIC ACID; PROTEOME; TITANIUM DIOXIDE;

EID: 33847616949     PISSN: 15487091     EISSN: 15491676     Source Type: Journal    
DOI: 10.1038/nmeth1005     Document Type: Article
Times cited : (518)

References (31)
  • 1
    • 2942564448 scopus 로고    scopus 로고
    • The RESID Database of Protein Modifications as a resource and annotation tool
    • Garavelli, J.S. The RESID Database of Protein Modifications as a resource and annotation tool. Proteomics 4, 1527-1533 (2004).
    • (2004) Proteomics , vol.4 , pp. 1527-1533
    • Garavelli, J.S.1
  • 2
    • 0034614490 scopus 로고    scopus 로고
    • Signaling - 2000 and beyond
    • Hunter, T. Signaling - 2000 and beyond. Cell 100, 113-127 (2000).
    • (2000) Cell , vol.100 , pp. 113-127
    • Hunter, T.1
  • 3
    • 0035241690 scopus 로고    scopus 로고
    • Mass spectrometry in proteomics
    • Aebersold, R. & Goodlett, D.R. Mass spectrometry in proteomics. Chem. Rev. 101, 269-295 (2001).
    • (2001) Chem. Rev. , vol.101 , pp. 269-295
    • Aebersold, R.1    Goodlett, D.R.2
  • 4
    • 33645509355 scopus 로고    scopus 로고
    • Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: Application to proteins isolated by gel electrophoresis
    • Sachon, E., Mohammed, S., Bache, N. & Jensen, O.N. Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: Application to proteins isolated by gel electrophoresis. Rapid Commun. Mass Sp. 20, 1127-1134 (2006).
    • (2006) Rapid Commun. Mass Sp. , vol.20 , pp. 1127-1134
    • Sachon, E.1    Mohammed, S.2    Bache, N.3    Jensen, O.N.4
  • 5
    • 0035356565 scopus 로고    scopus 로고
    • Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses
    • Goshe, M.B. et al. Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses. Anal. Chem. 73, 2578-2586 (2001).
    • (2001) Anal. Chem. , vol.73 , pp. 2578-2586
    • Goshe, M.B.1
  • 6
    • 4444371652 scopus 로고    scopus 로고
    • Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
    • Blagoev, B., Ong, S.E., Kratchmarova, I. & Mann, M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 22, 1139-1145 (2004).
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1139-1145
    • Blagoev, B.1    Ong, S.E.2    Kratchmarova, I.3    Mann, M.4
  • 7
    • 15944377809 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
    • Gruhler, A. et al. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 4, 310-327 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 310-327
    • Gruhler, A.1
  • 8
    • 23144441172 scopus 로고    scopus 로고
    • Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry
    • Tao, W.A. et al. Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nat. Methods 2, 591-598 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 591-598
    • Tao, W.A.1
  • 9
    • 0035072715 scopus 로고    scopus 로고
    • A systematic approach to the analysis of protein phosphorylation
    • Zhou, H., Watts, J.D. & Aebersold, R. A systematic approach to the analysis of protein phosphorylation. Nat. Biotechnol. 19, 375-378 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 375-378
    • Zhou, H.1    Watts, J.D.2    Aebersold, R.3
  • 10
    • 27744563093 scopus 로고    scopus 로고
    • State-of-the-art in phosphoproteomics
    • Reinders, J. & Sickmann, A. State-of-the-art in phosphoproteomics. Proteomics 5, 4052-4061 (2005).
    • (2005) Proteomics , vol.5 , pp. 4052-4061
    • Reinders, J.1    Sickmann, A.2
  • 11
    • 0028237972 scopus 로고
    • Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor
    • Gold, M.R. et al. Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor. Electrophoresis 15, 441-453 (1994).
    • (1994) Electrophoresis , vol.15 , pp. 441-453
    • Gold, M.R.1
  • 12
    • 0025957231 scopus 로고
    • Phorbol 12-myristate 13-acetate inhibits granulocyte-macrophage colony stimulating factor-induced protein tyrosine phosphorylation in a human factor-dependent hematopoietic cell line
    • Kanakura, Y., Druker, B., DiCarlo, J., Cannistra, S.A. & Griffin, J.D. Phorbol 12-myristate 13-acetate inhibits granulocyte-macrophage colony stimulating factor-induced protein tyrosine phosphorylation in a human factor-dependent hematopoietic cell line. J. Biol. Chem. 266, 490-495 (1991).
    • (1991) J. Biol. Chem. , vol.266 , pp. 490-495
    • Kanakura, Y.1    Druker, B.2    DiCarlo, J.3    Cannistra, S.A.4    Griffin, J.D.5
  • 13
    • 0022541790 scopus 로고
    • Isolation of phosphoproteins by immobilized metal (Fe-3+) affinity-chromatography
    • Andersson, L. & Porath, J. Isolation of phosphoproteins by immobilized metal (Fe-3+) affinity-chromatography. Anal. Biochem. 154, 250-254 (1986).
    • (1986) Anal. Biochem. , vol.154 , pp. 250-254
    • Andersson, L.1    Porath, J.2
  • 14
    • 21144458164 scopus 로고    scopus 로고
    • Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
    • Rush, J. et al. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotechnol. 23, 94-101 (2005).
    • (2005) Nat. Biotechnol. , vol.23 , pp. 94-101
    • Rush, J.1
  • 15
    • 0033562834 scopus 로고    scopus 로고
    • Iron(III)-immobilized metal ion affinity chromatography and mass spectrometry for the purification and characterization of synthetic phosphopeptides
    • Li, S. & Dass, C. Iron(III)-immobilized metal ion affinity chromatography and mass spectrometry for the purification and characterization of synthetic phosphopeptides. Anal. Biochem. 270, 9-14 (1999).
    • (1999) Anal. Biochem. , vol.270 , pp. 9-14
    • Li, S.1    Dass, C.2
  • 16
    • 0042861519 scopus 로고    scopus 로고
    • Phosphospecific proteolysis for mapping sites of protein phosphorylation
    • Knight, Z.A. et al. Phosphospecific proteolysis for mapping sites of protein phosphorylation. Nat. Biotechnol. 21, 1047-1054 (2003).
    • (2003) Nat. Biotechnol. , vol.21 , pp. 1047-1054
    • Knight, Z.A.1
  • 17
    • 0035067251 scopus 로고    scopus 로고
    • Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
    • Oda, Y., Nagasu, T. & Chait, B.T. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat. Biotechnol. 19, 379-382 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 379-382
    • Oda, Y.1    Nagasu, T.2    Chait, B.T.3
  • 18
    • 33847670327 scopus 로고    scopus 로고
    • An integrated chemical, mass spectrometric and computational strategy for phosphoproteome analysis: Application to human jurkat T cells
    • (in the press)
    • Bodenmiller, B. et al. An integrated chemical, mass spectrometric and computational strategy for phosphoproteome analysis: Application to human jurkat T cells. Mol. Biosyst. (in the press).
    • Mol. Biosyst.
    • Bodenmiller, B.1
  • 19
    • 0033565503 scopus 로고    scopus 로고
    • Immobilized gallium(III) affinity chromatography of phosphopeptides
    • Posewitz, M.C. & Tempst, P. Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal. Chem. 71, 2883-2892 (1999).
    • (1999) Anal. Chem. , vol.71 , pp. 2883-2892
    • Posewitz, M.C.1    Tempst, P.2
  • 20
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
    • Larsen, M.R., Thingholm, T.E., Jensen, O.N., Roepstorff, P. & Jorgensen, T.J. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol. Cell. Proteomics 4, 873-886 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jorgensen, T.J.5
  • 21
    • 3242688830 scopus 로고    scopus 로고
    • Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns
    • Pinkse, M.W.H., Uitto, P.M., Hithorst, M.J., Ooms, B. & Heck, A.J.R. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns. Anal. Chem. 76, 3935-3943 (2004).
    • (2004) Anal. Chem. , vol.76 , pp. 3935-3943
    • Pinkse, M.W.H.1    Uitto, P.M.2    Hithorst, M.J.3    Ooms, B.4    Heck, A.J.R.5
  • 22
    • 33645217942 scopus 로고    scopus 로고
    • Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis
    • Kweon, H.K. & Hakansson, K. Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis. Anal. Chem. 78, 1743-1749 (2006).
    • (2006) Anal. Chem. , vol.78 , pp. 1743-1749
    • Kweon, H.K.1    Hakansson, K.2
  • 23
    • 0032765337 scopus 로고    scopus 로고
    • Phosphopeptide analysis by on-line immobilized metal-ion affinity chromatography-capillary electrophoresis-electrospray ionization mass spectrometry
    • Cao, P. & Stutts, J.T. Phosphopeptide analysis by on-line immobilized metal-ion affinity chromatography-capillary electrophoresis-electrospray ionization mass spectrometry. J. Chromatogr. A. 853, 225-235 (1999).
    • (1999) J. Chromatogr. A. , vol.853 , pp. 225-235
    • Cao, P.1    Stutts, J.T.2
  • 24
    • 0036198435 scopus 로고    scopus 로고
    • Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
    • Ficarro, S.B. et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301-305 (2002).
    • (2002) Nat. Biotechnol. , vol.20 , pp. 301-305
    • Ficarro, S.B.1
  • 25
    • 11444263845 scopus 로고    scopus 로고
    • Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry
    • Nuhse, T.S., Stensballe, A., Jensen, O.N. & Peck, S.C. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Mol. Cell. Proteomics 2, 1234-1243 (2003).
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1234-1243
    • Nuhse, T.S.1    Stensballe, A.2    Jensen, O.N.3    Peck, S.C.4
  • 26
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • Elias, J.E., Haas, W., Faherty, B.K. & Gygi, S.P. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat. Methods 2, 667-675 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 667-675
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 27
    • 0036605185 scopus 로고    scopus 로고
    • Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome
    • Mann, M. et al. Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome. Trends Biotechnol. 20, 261-268 (2002).
    • (2002) Trends Biotechnol. , vol.20 , pp. 261-268
    • Mann, M.1
  • 28
    • 27944499451 scopus 로고    scopus 로고
    • An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
    • Schwartz, D. & Gygi, S.P. An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat. Biotechnol. 23, 1391-1398 (2005).
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1391-1398
    • Schwartz, D.1    Gygi, S.P.2
  • 29
    • 0035863653 scopus 로고    scopus 로고
    • Analysis of protein phosphorylation by a combination of elastase digestion and neutral loss tandem mass spectrometry
    • Schlosser, A., Pipkom, R., Bossemeyer, D. & Lehmann, W.D. Analysis of protein phosphorylation by a combination of elastase digestion and neutral loss tandem mass spectrometry. Anal. Chem. 73, 170-176 (2001).
    • (2001) Anal. Chem. , vol.73 , pp. 170-176
    • Schlosser, A.1    Pipkom, R.2    Bossemeyer, D.3    Lehmann, W.D.4
  • 30
    • 2642583142 scopus 로고    scopus 로고
    • Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry: Evidence for in vivo doubly phosphorylated dynamin I and dynamin III
    • Larsen, M.R., Graham, M.E., Robinson, P.J. & Roepstorff, P. Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry: Evidence for in vivo doubly phosphorylated dynamin I and dynamin III. Mol. Cell. Proteomics 3, 456-465 (2004).
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 456-465
    • Larsen, M.R.1    Graham, M.E.2    Robinson, P.J.3    Roepstorff, P.4
  • 31
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., Nesvizhskii, A.I., Kolker, E. & Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392 (2002).
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.