-
2
-
-
0037079054
-
Computational systems biology
-
Kitano H, (2002) Computational systems biology. Nature 420: 206-210.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
3
-
-
0037079014
-
The structure of the protein universe and genome evolution
-
Koonin EV, Wolf YI, Karev GP, (2002) The structure of the protein universe and genome evolution. Nature 420: 218-223.
-
(2002)
Nature
, vol.420
, pp. 218-223
-
-
Koonin, E.V.1
Wolf, Y.I.2
Karev, G.P.3
-
4
-
-
0141484562
-
Biological networks: The tinkerer as an engineer
-
Alon U, (2003) Biological networks: The tinkerer as an engineer. Science 301: 1866-1867.
-
(2003)
Science
, vol.301
, pp. 1866-1867
-
-
Alon, U.1
-
5
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi AL, Oltvai ZN, (2004) Network biology: Understanding the cell's functional organization. Nature Reviews Genetics 5: 101-113.
-
(2004)
Nature Reviews Genetics
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
6
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu HY, Zhong GQ, Guo XH, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.Y.3
Zhong, G.Q.4
Guo, X.H.5
-
7
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
-
8
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
Palla G, Derenyi I, Farkas I, Vicsek T, (2005) Uncovering the overlapping community structure of complex networks in nature and society. Nature 435: 814-818.
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
9
-
-
13444301479
-
PreSPI: a domain combination based prediction system for protein-protein interaction
-
Han DS, Kim HS, Jang WH, Lee SD, Suh JK, (2004) PreSPI: a domain combination based prediction system for protein-protein interaction. Nucleic Acids Research 32: 6312-6320.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 6312-6320
-
-
Han, D.S.1
Kim, H.S.2
Jang, W.H.3
Lee, S.D.4
Suh, J.K.5
-
10
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han JDJ, Bertin N, Hao T, Goldberg DS, Berriz GF, et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430: 88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.J.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
-
11
-
-
33751255087
-
Evaluation of clustering algorithms for protein-protein interaction networks
-
Brohee S, van Helden J, (2006) Evaluation of clustering algorithms for protein-protein interaction networks. Bmc Bioinformatics 7: 488.
-
(2006)
Bmc Bioinformatics
, vol.7
, pp. 488
-
-
Brohee, S.1
van Helden, J.2
-
12
-
-
0037059461
-
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
-
Tong AHY, Drees B, Nardelli G, Bader GD, Brannetti B, et al. (2002) A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 295: 321-324.
-
(2002)
Science
, vol.295
, pp. 321-324
-
-
Tong, A.H.Y.1
Drees, B.2
Nardelli, G.3
Bader, G.D.4
Brannetti, B.5
-
13
-
-
33645830948
-
CFinder: locating cliques and overlapping modules in biological networks
-
Adamcsek B, Palla G, Farkas IJ, Derenyi I, Vicsek T, (2006) CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 22: 1021-1023.
-
(2006)
Bioinformatics
, vol.22
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derenyi, I.4
Vicsek, T.5
-
14
-
-
34248397539
-
A novel functional module detection algorithm for protein-protein interaction networks
-
Hwang W, Cho YR, Zhang AD, Ramanathan M, (2006) A novel functional module detection algorithm for protein-protein interaction networks. Algorithms for Molecular Biology 1: 24.
-
(2006)
Algorithms for Molecular Biology
, vol.1
, pp. 24
-
-
Hwang, W.1
Cho, Y.R.2
Zhang, A.D.3
Ramanathan, M.4
-
15
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
Bu DB, Zhao Y, Cai L, Xue H, Zhu XP, et al. (2003) Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research 31: 2443-2450.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 2443-2450
-
-
Bu, D.B.1
Zhao, Y.2
Cai, L.3
Xue, H.4
Zhu, X.P.5
-
17
-
-
56149108393
-
Adaptive clustering algorithm for community detection in complex networks
-
Ye ZQ, Hu SN, Yu J, (2008) Adaptive clustering algorithm for community detection in complex networks. Physical Review E 78: 046115.
-
(2008)
Physical Review E
, vol.78
, pp. 046115
-
-
Ye, Z.Q.1
Hu, S.N.2
Yu, J.3
-
18
-
-
77949503577
-
Protein complex prediction based on simultaneous protein interaction network
-
Jung SH, Hyun B, Jang WH, Hur HY, Han DS, (2010) Protein complex prediction based on simultaneous protein interaction network. Bioinformatics 26: 385-391.
-
(2010)
Bioinformatics
, vol.26
, pp. 385-391
-
-
Jung, S.H.1
Hyun, B.2
Jang, W.H.3
Hur, H.Y.4
Han, D.S.5
-
19
-
-
34347329333
-
In search of the biological significance of modular structures in protein networks
-
Wang Z, Zhang JZ, (2007) In search of the biological significance of modular structures in protein networks. Plos Computational Biology 3: e107.
-
(2007)
Plos Computational Biology
, vol.3
-
-
Wang, Z.1
Zhang, J.Z.2
-
21
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL, (2002) Hierarchical organization of modularity in metabolic networks. Science 297: 1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
22
-
-
2942564706
-
Detecting community structure in networks
-
Newman MEJ, (2004) Detecting community structure in networks. European Physical Journal B 38: 321-330.
-
(2004)
European Physical Journal B
, vol.38
, pp. 321-330
-
-
Newman, M.E.J.1
-
23
-
-
37649028224
-
Finding and evaluating community structure in networks
-
Newman MEJ, Girvan M, (2004) Finding and evaluating community structure in networks. Physical Review E 69: 026113.
-
(2004)
Physical Review E
, vol.69
, pp. 026113
-
-
Newman, M.E.J.1
Girvan, M.2
-
24
-
-
33746227724
-
Statistical mechanics of community detection
-
Reichardt J, Bornholdt S, (2006) Statistical mechanics of community detection. Physical Review E 74: 016110.
-
(2006)
Physical Review E
, vol.74
, pp. 016110
-
-
Reichardt, J.1
Bornholdt, S.2
-
25
-
-
77953077420
-
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
-
Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, et al. (2010) A Global Protein Kinase and Phosphatase Interaction Network in Yeast. Science 328: 1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
-
26
-
-
18744376914
-
Online predicted human interaction database
-
Brown KR, Jurisica I, (2005) Online predicted human interaction database. Bioinformatics 21: 2076-2082.
-
(2005)
Bioinformatics
, vol.21
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
27
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, et al. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Research 32: D449-D451.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
-
29
-
-
0033592606
-
Learning the parts of objects by non-negative matrix factorization
-
Lee DD, Seung HS, (1999) Learning the parts of objects by non-negative matrix factorization. Nature 401: 788-791.
-
(1999)
Nature
, vol.401
, pp. 788-791
-
-
Lee, D.D.1
Seung, H.S.2
-
32
-
-
14644396645
-
Functional cartography of complex metabolic networks
-
Guimera R, Amaral LAN, (2005) Functional cartography of complex metabolic networks. Nature 433: 895-900.
-
(2005)
Nature
, vol.433
, pp. 895-900
-
-
Guimera, R.1
Amaral, L.A.N.2
-
34
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: tool for the unification of biology. Nature Genetics 25: 25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
35
-
-
24044440971
-
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
Maere S, Heymans K, Kuiper M, (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks. Bioinformatics 21: 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
36
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research 13: 2498-2504.
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
38
-
-
34547237784
-
Partitioning and modularity of graphs with arbitrary degree distribution
-
Reichardt J, Bornholdt S, (2007) Partitioning and modularity of graphs with arbitrary degree distribution. Physical Review E 76: 015102.
-
(2007)
Physical Review E
, vol.76
, pp. 015102
-
-
Reichardt, J.1
Bornholdt, S.2
-
39
-
-
42749100809
-
Fast algorithm for detecting community structure in networks
-
Newman MEJ, (2004) Fast algorithm for detecting community structure in networks. Physical Review E 69: 066133.
-
(2004)
Physical Review E
, vol.69
, pp. 066133
-
-
Newman, M.E.J.1
|