Exploiting local coherent patterns for unsupervised feature ranking

IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics

Volumn 41, Issue 6, 2011, Pages 1471-1482

  Huang, Qinghua ^a   Tao, Dacheng ^b   Li, Xuelong ^c   Jin, Lianwen ^a   Wei, Gang ^a  

^a SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

^b UNIVERSITY OF TECHNOLOGY SYDNEY   (Australia)

^c XI AN INSTITUTE OF OPTICS AND PRECISION MECHANICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS RESULTS; BICLUSTERS; DATA MATRICES; DATA SETS; FEATURE RANKING; FISHER SCORE; GENE EXPRESSION DATA ANALYSIS; GENE ONTOLOGY; HIGH DIMENSIONAL DATA; LAPLACIANS; SUB-MATRICES;

GENE EXPRESSION; MATRIX ALGEBRA; ONTOLOGY;

FEATURE EXTRACTION;

EID: 81955163023     PISSN: 10834419     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSMCB.2011.2151256     Document Type: Article

References (33)

1. T. W. S. Chow, P. Y. Wang and E. W. M. Ma, "A new feature selection scheme using a data distribution factor for unsupervised nominal data," IEEE Trans. Syst., Man, Cybern. B, Cybern., vol. 38, no. 2, pp. 499-509, Apr. 2008. (Pubitemid 351479568)
2. Q. H. Hu, W. Pedrycz, D. R. Yu and J. Lang, "Selecting discrete and continuous features based on neighborhood decision error minimization," IEEE Trans. Syst., Man, Cybern. B, Cybern., vol. 40, no. 1, pp. 137-150, Feb. 2010.
3. X. L. Li, S. Lin, S. Yan and D. Xu, "Discriminant locally linear embedding with high-order tensor data," IEEE Trans. Syst., Man, Cybern. B, Cybern., vol. 38, no. 2, pp. 342-352, Apr. 2008. (Pubitemid 351479557)
4. A. K. Jain, R. P.W. Duin and J. C.Mao, "Statistical pattern recognition: A review," IEEE Trans. Pattern Anal. Mach. Intell., vol. 22, no. 1, pp. 4-37, Jan. 2000. (Pubitemid 32132953)
5. H. Liu and L. Yu, "Toward integrating feature selection algorithms for classification and clustering," IEEE Trans. Knowl. Data Eng., vol. 17, no. 4, pp. 491-502, Apr. 2005. (Pubitemid 40495592)
6. X. L. Li, Y. Pang and Y. Yuan, "L1-norm-based 2D PCA," IEEE Trans. Syst., Man, Cybern. B, Cybern., vol. 40, no. 4, pp. 1170-1175, Aug. 2010.
7. M. Dash and H. Liu, "Feature selection for classification," Intell. Data Anal.: Int. J., vol. 1, no. 3, pp. 131-156, 1997.
8. I. Guyon and A. Elisseeff, "An introduction to variable and feature selection," J. Mach. Learn. Res., vol. 3, pp. 1157-1182, 2003.
9. M. H. Asyali, D. Colak, O. Demirkaya and M. S. Inan, "Gene expression profile classification: A review," Curr. Bioinform., vol. 1, no. 1, pp. 55-73, Jan. 2006.
10. H. Liu and H. Motoda, Feature Selection for Knowledge Discovery and Data Mining. Boston, MA: Kluwer, 2001.
11. R. Kohavi and G. H. John, "Wrappers for feature subset selection," Artif. Intell., vol. 97, no. 1/2, pp. 273-324, Dec. 1997. (Pubitemid 127401107)
12. J. G. Dy, C. E. Brodley, A. Kak, L. S. Broderick and A. M. Aisen, "Unsupervised feature selection applied to content-based retrieval of lung images," IEEE Trans. Pattern Anal. Mach. Intell., vol. 25, no. 3, pp. 373- 378, Mar. 2003.
13. P. Pudil, J. Novovicova and J. Kittler, "Floating search methods in feature selection," Pattern Recognit. Lett., vol. 15, no. 11, pp. 1119-1125, Nov. 1994.
14. Z. X. Zhu, Y. S. Ong, K. W. Wong and K. T. Seow, "Experimental condition selection in whole-genome functional classification," in Proc. IEEE Conf. Cybern. Intell. Syst., Singapore, 2004, pp. 295-300. (Pubitemid 40062317)
15. H. C. Peng, F. H. Long and C. Ding, "Feature selection based on mutual information: Criteria of Max-dependency, Max-relevance and Minredundancy," IEEE Trans. Pattern Anal. Mach. Intell., vol. 27, no. 8, pp. 1226-1238, Aug. 2005. (Pubitemid 41245053)
16. Y. Cheng and G. M. Church, "Biclustering of expression data," in Proc. 8th Int. Conf. ISMB, 2000, pp. 93-103.
17. S. C. Madeira and A. L. Oliveira, "Biclustering algorithms for biological data analysis: A survey," IEEE/ACM Trans. Comput. Biol. Bioinform., vol. 1, no. 1, pp. 24-45, Jan.-Mar. 2004.
18. C. M. Bishop, Neural Networks for Pattern Recognition. Oxford, U.K.: Oxford Univ. Press, 1995.
19. X. He, D. Cai and P. Niyogi, "Laplacian score for feature selection," in Advances in Neural Information Processing Systems, 17. Cambridge, MA: MIT Press, 2005.
20. P. Mitra, C. A. Murthy and S. K. Pal, "Unsupervised feature selection using feature similarity," IEEE Trans. Pattern Anal. Mach. Intell., vol. 24, no. 3, pp. 301-312, Mar. 2002. (Pubitemid 35289348)
21. H. L. Wei and S. A. Billings, "Feature subset selection and ranking for data dimensionality reduction," IEEE Trans. Pattern Anal. Mach. Intell., vol. 29, no. 1, pp. 162-166, Jan. 2007. (Pubitemid 46415953)
22. M. Law, M. Figueiredo and A. K. Jain, "Simultaneous feature selection and clustering using mixture models," IEEE Trans. Pattern Anal. Mach. Intell., vol. 26, no. 9, pp. 1154-1166, Sep. 2004.
23. B. Liu, C.Wan and L.Wang, "An efficient semi-supervised gene selection via spectral biclustering," IEEE Trans. Nanobiosci., vol. 5, no. 2, pp. 110- 114, Jun. 2006. (Pubitemid 44144067)
24. [Online]. Available: http://www.ics.uci.edu/~mlearn/MLSummary.html
25. X. Xu, Y. Lu, A. K. H. Tung and W. Wang, "Mining shifting-and-scaling co-regulation patterns on gene expression profiles," in Proc. 22nd Int. Conf. Data Eng., 2006, p. 89. (Pubitemid 44539881)
26. D. Q. Zhang, S. C. Chen and Z. H. Zhou, "Constraint Score: A new filter method for feature selection with pairwise constraints," Pattern Recognit., vol. 41, no. 5, pp. 1440-1451, May 2008.
27. J. N. Liang, S. Yang and A. Winstanley, "Invariant optimal feature selection: A distance discriminant and feature ranking based solution," Pattern Recognit., vol. 41, no. 5, pp. 1429-1439, May 2008.
28. A. P. Gasch, P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein and P. O. Brown, "Genomic expression programs in the response of Yeast cells to environmental changes," Mol. Biol. Cell, vol. 11, no. 12, pp. 4241-4257, Dec. 2000.
29. [Online]. Available: http://mips.gsf.de/proj/yeast/catalogues/funcat
30. [Online]. Available: http://clopinet.com/isabelle/Projects/modelselect/
31. H. Xiong, P. N. Tan and V. Kumar, "Hyperclique pattern discovery," Data Mining Knowl. Discov., vol. 13, no. 2, pp. 219-242, Sep. 2006. (Pubitemid 44352883)
32. X. L. Li and Y. Pang, "Deterministic column-based matrix decomposition," IEEE Trans. Knowl. Data Eng., vol. 22, no. 1, pp. 145-149, Jan. 2010.
33. Y. Yuan, X. L. Li, Y. Pang, X. Lu and D. Tao, "Binary sparse nonnegative matrix factorization," IEEE Trans. Circuits Syst. Video Technol., vol. 19, no. 5, pp. 772-777, May 2009.