Genes involved in protein metabolism of the probiotic lactic acid bacterium Lactobacillus delbrueckii UFV H2b20

Beneficial Microbes

Volumn 2, Issue 3, 2011, Pages 209-220

  Do Carmo, A P ^a   da Silva, D F ^b   De Oliveira, M N V ^a   Borges, A C ^a   De Carvalho, A F ^a   De Moraes, C A ^a  

^a FEDERAL UNIVERSITY OF VIÇOSA   (Brazil)

^b UNIVERSIDADE FEDERAL DOS VALES DO JEQUITINHONHA E MUCURI   (Brazil)

Author keywords

Bayesian inference; Lactic acid bacteria; Lactobacillus delbrueckii; Probiotic; Proteolytic system

Indexed keywords

AMINOPEPTIDASE; AMINOPEPTIDASE C; AMINOPEPTIDASE X; ENDOPEPTIDASE F; ENDOPEPTIDASE G; MICROSOMAL AMINOPEPTIDASE; PROTEINASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; GENE IDENTIFICATION; GENETIC CONSERVATION; ILVE GENE; LACTOBACILLUS DELBRUECKII; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPPBII GENE; OPPC GENE; PEPC GENE; PEPF GENE; PEPN GENE; PEPX GENE; PROTEIN METABOLISM; SEQUENCE ANALYSIS;

EID: 81855217456     PISSN: 18762883     EISSN: 18762891     Source Type: Journal    
DOI: 10.3920/BM2011.0025     Document Type: Article

References (42)

1. Atiles, M., Dudley, E.G. and Steele, J.L., 2000. Gene cloning, sequencing and inactivation of the branched-chain aminotransferase of Lactococcus lactis LM0230. Applied and Environmental Microbiology 66: 2325-2329.
2. Boekhorst, J., Siezen, R.J., Zwahlen, M.C., Vilanova, D., Pridmore, R.D., Mercenier, A., Kleerebezem, M., De Vos, W.M., Brüssow, H. and Desiere, F., 2004. The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology 150: 3601-3611.
3. Cai, H., Thompson, R., Budinich, M.F., Broadbent, J.R. and Steele, J.L., 2009. Genome sequence and comparative genome analysis of Lactobacillus casei: insights to their niche-associated evolution. Genome Biology and Evolution 1: 239-257.
4. Canchaya, C., Claesson, M.J., Fitzgerald, G.F., Van Sinderen, D. and O'Toole, P.W., 2006. Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152: 3185-3196.
5. Chapot-Chartier, M.P., Nardi, M., Chopin, M.C., Chopin, A. and Gripon, J.C., 1993. Cloning and sequencing of pepC, a cysteine aminopeptidase gene from Lactococcus lactis subsp. cremoris AM2. Applied and Environmental Microbiology 59: 330-333.
6. Charvagnat, F., Casey, M.G. and Meyer, J., 1999. Purification, characterization, gene cloning, sequencing, and overexpression of aminopeptidase N from Streptococcus thermophilus. Applied and Environmental Microbiology 65: 3001-3007.
7. Christensen, J.E., Dudley, E.G., Pederson, J.A. and Steele, J.L., 1999. Peptidases and amino acid catabolism in lactic acid bacteria. Antonie van Leeuwenhoek 76: 217-246.
8. Christensen, J.E., Lin, D., Palva, A. and Steele, J.L., 1995. Sequence analysis, distribution and expression of an aminopeptidase gene from Lactobacillus helveticus CNRZ32. Gene 155: 89-93.
9. De Palencia, P.F., De Felipe, P.L. and Peláez, C., 2000. The aminopeptidase C (PepC) from Lactobacillus helveticus CNRZ32: a comparative study of PepC from lactic acid bacteria. European Food Research and Technology 321: 89-94.
10. Dicks, L.M.T. and Endo, A., 2009. Taxonomic status of lactic acid bacteria in wine and key characteristics to differentiate species. South African Journal of Enology and Viticulture 30: 72-90.
11. El Soda, M., Farkye, N., Vuillemard, J.C., Simard, R.E., Olson, N.F., El Kholy, W., Dako, E., Medrano, E., Gaber, M. and Lim, L., 1995. Autolysis of lactic acid bacteria: impact on flavor development in cheese. Developments in Food Science 37: 2205-2223.
12. Fernández, L., Bhowmik, T. and Steele, J., 1994. Characterization of the Lactobacillus helveticus CNRZ32 pepC gene. Applied and Environmental Microbiology 60: 333-336.
13. Germond, J.-E., Lapierre, L., Delley, M., Mollet, B., Felis, G.E. and Dellaglio, F., 2003. Evolution of the bacterial species Lactobacillus delbrueckii: a partial genomic study with reflections on prokaryotic species concept. Molecular Biology and Evolution 20: 93-104.
14. Gumalla, S. and Broadbent, J.R., 1999. Tryptophan catabolism by Lactobacillus casei and Lactobacillus helveticus cheese flavor adjuncts. Journal of Dairy Science 82: 2070-2077.
15. Kant, R., Blom, J., Palva, A., Siezen, R.J. and De Vos, W.H., 2010. Comparative genomics of Lactobacillus. Microbial Biotechnology 4: 323-332.
16. Klaenhammer, T.R., Barrangou, R., Buck, B.L., Azcarate-Peril, M.A. and Altermann, E., 2005. Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiology Letters 29: 393-409.
17. Klein, J., Henrich, B. and Plapp, R., 1994. Cloning and nucleotide sequence analysis of the Lactobacillus delbrueckii subsp. lactis DSM 7290 cysteine aminopeptidase pepC. FEMS Microbiology Letters 124: 291-300.
18. Klein, J., Klein, U., Schad, M. and Plapp, R., 1993. Cloning, DNA sequence and partial characterization of pepN, a lysil-aminopeptidase from Lactobacillus delbrueckii subsp. lactis DSM 7290. European Journal of Biochemistry 217: 105-114.
19. Klein, J., Klein, U., Schick, J., Matern, H., Henrich, B. and Plapp, R., 1997. Lactobacillus delbrueckii subsp. lactis DSM 7290 pepG gene encodes a novel cysteine aminopeptidase. Microbiology 143: 527-537.
20. Liu, M. and Siezen, R.J., 2006. Comparative genomics of flavour-forming pathways in lactic acid bacteria. Australian Journal of Dairy Technology 61: 61-68.
21. Liu, M., Bayjanov, J.R., Reckens, B., Nauta, A. and Siezen, R.J., 2010. The proteolytic system of lactic acid bacteria revisited: a genomic comparison. BMC Genomics 11: 1-15.
22. Liu, M., Nauta, A., Francke, C. and Siezen, R.J., 2008. Comparative genomics of enzymes in flavour-forming pathways from amino acids in lactic acid bacteria. Applied and Environmental Microbiology 74: 4590-4600.
23. Magalhães, J.T., Floresta, F.A. and Moraes, C.A., 2005. Partial characterization of ribosomal operons of Lactobacillus UFV H2b20. Brazilian Journal of Microbiology 36: 177-183.
24. Magalhães, J.T., Uetanabaro, A.P.T. and Moraes, C.A., 2008. Identification of Lactobacillus UFV H2b20 (probiotic strain) using DNA-DNA hybridization. Brazilian Journal of Microbiology 39: 524-546.
25. Makarova, K. and Koonin, E.V., 2007. Evolutionary genomics of lactic acid bacteria. Journal of Bacteriology 189: 1199-1208.
26. Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., Shakhova, V., Grigoriev, I., Lou, Y., Rohksar, D., Lucas, S., Huang, K., Goodstein, D.M., Hawkins, T., Plengvidhya, V., Welker, D., Hughes, J., Goh, Y., Benson, A., Baldwin, K., Lee, J.-H., Díaz-Muñiz, I., Dosti, B., Smeianov, V., Wechter, W., Barabote, R., Lorca, G., Alterman, E., Barrangou, R., Ganesan, B., Xie, Y., Rawsthorne, H., Tamir, D., Parker, C., Breidt, F., Broadbent, J., Hutkins, R., O'Sullivan, D., Steele, J., Unlu, G., Saier, M., Klaenhammer, T., Richardson, P., Kozyavkin, S., Weimer, B. and Mills, D., 2006. Comparative genomics of lactic acid bacteria. Proceedings of the National Academy of Sciences of the USA 103: 15611-15616.
27. Marilley, L. and Casey, M.G., 2004. Flavours of cheese products: metabolic pathways, analytical tools and identification of producing strains. International Journal of Food Microbiology 90: 19-159.
28. McSweeney, P.L.H. and Sousa, M.J., 2000. Biochemical pathways for the production of flavour compounds in cheeses during ripening. Lait 80: 293-324.
29. Monnet, V., Nardi, M., Chopin, A., Chopin, M.C. and Gripon, J.C., 1994. Biochemical and genetic characterization of PepF, an oligopeptidase from Lactococcus lactis. Journal of Biological Chemistry 269: 32070-32076.
30. Morel, F., Frot-Coutaz, J., Aubel, D., Portalier, R. and Atlan, D., 1999. Characterization of a prolidase from Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 with an unusual regulation of biosynthesis. Microbiology 145: 437-446.
31. Morel, F., Lamarque, M., Bissardon, I., Atlan, D. and Galinier, A., 2001. Autoregulation of the biosynthesis of the CcpA-like protein, pepR1, in Lactobacillus delbrueckii subsp. bulgaricus. Journal of Molecular Microbiology and Biotechnology 3: 63-66.
32. Nardi, M., Renault, P. and Monnet, F., 1997. Duplication of the pepF gene and shuffling of DNA fragments on the lactose plasmid of Lactococcus lactis. Journal of Bacteriology 179: 4164-4171.
33. Nelson, D.L. and Cox, M.M., 2005. Amino acid oxidation and the production of urea. In: Nelson, D.L. and Cox, M.M. (eds.) Lehninger principles of biochemistry. 4th ed. Freeman and Company Inc., New York, NY, USA, pp. 656-689.
34. Pastink, M.I., Siewerts, S., De Bok, F.A.M., Janssen, P.W.M., Teusink, B., Van Hylckama Vlieg, J.E.T. and Hugenholtz, J., 2008. Genomics and high-throughput screening approaches for optimal flavour production in dairy fermentation. International Dairy Journal 18: 781-789.
35. Peltoniemi, K., Vesanto, E. and Palva, A., 2002. Genetic characterization of an oligopeptide transport system from Lactobacillus delbrueckii subsp. bulgaricus. Archives in Microbiology 177: 457-467.
36. Sabioni, N.S.S., Pinheiro, A.J.R. and Teixeira, M.A., 1988. Acidophilus milk: isolation and characterization of Lactobacillus acidophilus from breast-fed children and from young calves feces. Revista de Microbiologia 19: 393-398.
37. Savijoki, K., Ingmer, H. and Varmanen, P., 2006. Proteolytic systems of lactic acid bacteria. Applied Microbiology and Biotechnology 71: 394-406.
38. Schick, J., Weber, B., Klein, J.R. and Henrich, B., 1999. PepR1, a CcpA-like transcription regulator of Lactobacillus delbrueckii subsp. lactis. Microbiology 145: 3147-3154.
39. Siezen, R.J., 1999. Multi-domains, cell-envelope proteinases of lactic acid bacteria. Antonie van Leeuwenhoek 76: 139-155.
40. Smit, G., Smit, B.A. and Engels, W.J.M., 2005. Flavour formation by lactic acid bacteria and biochemical flavor profiling of cheese products. FEMS Microbiology Reviews 29: 591-610.
41. Tsakalidou, E., Anastasiou, R., Vandenberghe, I., Van Beeumen, J. and Kalantzopoulos, G., 1999. Cell-wall bound proteinase of Lactobacillus delbrueckii subsp. lactis ACA-DC 178: characterization and specificity for β-casein. Applied and Environmental Microbiology 65: 2035-2040.
42. Tynkkynen, S., Buist, G., Kunji, E., Kok, J., Poolman, B., Venema, G. and Haandrikman, A., 1993. Genetic and biochemical characterization of the oligopeptide transport system of Lactococcus lactis. Journal of Bacteriology 175: 7523-7532.