-
1
-
-
33947503758
-
RNA expression analysis of formalin-fixed paraffin-embedded tumors
-
DOI 10.1038/labinvest.3700529, PII 3700529
-
Penland SK, Keku TO, Torrice C, et al. RNA expression analysis of formalin-fixed paraffin-embedded tumors. Lab Invest. 2007;87: 383-391. (Pubitemid 46474570)
-
(2007)
Laboratory Investigation
, vol.87
, Issue.4
, pp. 383-391
-
-
Penland, S.K.1
Keku, T.O.2
Torrice, C.3
He, X.4
Krishnamurthy, J.5
Hoadley, K.A.6
Woosley, J.T.7
Thomas, N.E.8
Perou, C.M.9
Sandler, R.S.10
Sharpless, N.E.11
-
2
-
-
1542469713
-
Measurement of Gene Expression in Archival Paraffin-Embedded Tissues: Development and Performance of a 92-Gene Reverse Transcriptase-Polymerase Chain Reaction Assay
-
Cronin M, Pho M, Dutta D, et al. Measurement of gene expression in archival paraffin-embedded tissues: development and perfor-mance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am JPathol. 2004;164:35-42. (Pubitemid 38364587)
-
(2004)
American Journal of Pathology
, vol.164
, Issue.1
, pp. 35-42
-
-
Cronin, M.1
Pho, M.2
Dutta, D.3
Stephans, J.C.4
Shak, S.5
Kiefer, M.C.6
Esteban, J.M.7
Baker, J.B.8
-
3
-
-
42449151984
-
Evaluation and validation of total RNA extraction methods for microRNA expression analyses in formalin-fixed, paraffin-embedded tissues
-
DOI 10.2353/jmoldx.2008.070153
-
Doleshal M, Magotra AA, Choudhury B, et al. Evaluation and validation of total RNA extraction methods for microRNA expression analyses in formalin-fixed, paraffin-embedded tissues. J Mol Diagn. 2008;10:203-211. (Pubitemid 351692162)
-
(2008)
Journal of Molecular Diagnostics
, vol.10
, Issue.3
, pp. 203-211
-
-
Doleshal, M.1
Magotra, A.A.2
Choudhury, B.3
Cannon, B.D.4
Labourier, E.5
Szafranska, A.E.6
-
4
-
-
69549108768
-
RNA extraction from archival formalin-fixed paraffin-embedded tissue: A comparison of manual, semiautomated, and fully automated purification methods
-
Bohmann K, Hennig G, Rogel U, et al. RNA extraction from archival formalin-fixed paraffin-embedded tissue: a comparison of manual, semiautomated, and fully automated purification methods. Clin Chem. 2009;55:1719-1727.
-
(2009)
Clin Chem
, vol.55
, pp. 1719-1727
-
-
Bohmann, K.1
Hennig, G.2
Rogel, U.3
-
5
-
-
70450203695
-
Comparison of 11 endogenous control genes for normalization of mRNA obtained from paraffin-embedded tissues
-
Pai R, Samuel P, Nehru AG, et al. Comparison of 11 endogenous control genes for normalization of mRNA obtained from paraffin-embedded tissues. APMIS. 2009;117:886-892.
-
(2009)
APMIS
, vol.117
, pp. 886-892
-
-
Pai, R.1
Samuel, P.2
Nehru, A.G.3
-
6
-
-
0033571272
-
Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
-
DOI 10.1093/nar/27.22.4436
-
Masuda N, Ohnishi T, Kawamoto S, et al. Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res. 1999;27:4436-4443. (Pubitemid 29533185)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.22
, pp. 4436-4443
-
-
Masuda, N.1
Ohnishi, T.2
Kawamoto, S.3
Monden, M.4
Okubo, K.5
-
7
-
-
42149143085
-
Determinants of RNA quality from FFPE samples
-
von Ahlfen S, Missel A, Bendrat K, et al. Determinants of RNA quality from FFPE samples. PLoS One. 2007;2:e1261.
-
(2007)
PLoS One
, vol.2
-
-
Von Ahlfen, S.1
Missel, A.2
Bendrat, K.3
-
8
-
-
77649185945
-
Comparison ofmethods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues
-
Okello JB, Zurek J, Devault AM, et al. Comparison ofmethods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues. Anal Biochem. 2010;400:110-117.
-
(2010)
Anal Biochem
, vol.400
, pp. 110-117
-
-
Okello, J.B.1
Zurek, J.2
Devault, A.M.3
-
9
-
-
74549120215
-
Application of RT-PCR in formalin-fixed and paraffin-embedded lung cancer tissues
-
Zhang F, Wang ZM, Liu HY. Application of RT-PCR in formalin-fixed and paraffin-embedded lung cancer tissues. Acta Pharmacol Sin. 2010;31:111-117.
-
(2010)
Acta Pharmacol Sin
, vol.31
, pp. 111-117
-
-
Zhang, F.1
Wang, Z.M.2
Liu, H.Y.3
-
10
-
-
50249102857
-
RNA expression analysis from formalin fixed paraffin embedded tissues
-
Farragher SM, Tanney A, Kennedy RD, et al. RNA expression analysis from formalin fixed paraffin embedded tissues. Histochem Cell Biol. 2008;130:435-445.
-
(2008)
Histochem Cell Biol
, vol.130
, pp. 435-445
-
-
Farragher, S.M.1
Tanney, A.2
Kennedy, R.D.3
-
11
-
-
26844512816
-
Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
-
DOI 10.1042/CS20050086
-
Bustin SA, Mueller R. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clin Sci (Lond). 2005;109:365-379. (Pubitemid 41445244)
-
(2005)
Clinical Science
, vol.109
, Issue.4
, pp. 365-379
-
-
Bustin, S.A.1
Mueller, R.2
-
12
-
-
14044265394
-
Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction
-
Bustin SA, Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J Biomol Tech. 2004;15: 155-166.
-
(2004)
J Biomol Tech
, vol.15
, pp. 155-166
-
-
Bustin, S.A.1
Nolan, T.2
-
13
-
-
33847643776
-
Quantification of mRNA using real-time RT-PCR
-
Nolan T, Hands RE, Bustin SA. Quantification of mRNA using real-time RT-PCR. Nat Protoc. 2006;1:1559-1582.
-
(2006)
Nat Protoc
, vol.1
, pp. 1559-1582
-
-
Nolan, T.1
Hands, R.E.2
Bustin, S.A.3
-
14
-
-
33748095919
-
Comparison of relative mRNA quantification models and the impact of RNA integrity in quantitative real-time RT-PCR
-
DOI 10.1007/s10529-006-9127-2
-
Fleige S, Walf V, Huch S, et al. Comparison of relative mRNA quantification models and the impact of RNA integrity in quantitative real-time RT-PCR. BiotechnolLett. 2006;28:1601-1613. (Pubitemid 44306128)
-
(2006)
Biotechnology Letters
, vol.28
, Issue.19
, pp. 1601-1613
-
-
Fleige, S.1
Walf, V.2
Huch, S.3
Prgomet, C.4
Sehm, J.5
Pfaffl, M.W.6
-
15
-
-
77049124584
-
Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter Assay System
-
Malkov VA, Serikawa KA, Balantac N, et al. Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter Assay System. BMC Res Notes. 2009; 2:80.
-
(2009)
BMC Res Notes
, vol.2
, pp. 80
-
-
Malkov, V.A.1
Serikawa, K.A.2
Balantac, N.3
-
16
-
-
77955482956
-
MicroRNA profiling ofclear cell renal cell carcinoma by whole-genome small RNA deep sequencing of paired frozen and formalin-fixed, paraffin-embedded tissue speci-mens
-
Weng L, Wu X, Gao H, et al. MicroRNA profiling ofclear cell renal cell carcinoma by whole-genome small RNA deep sequencing of paired frozen and formalin-fixed, paraffin-embedded tissue speci-mens. J Pathol. 2010;222:41-51.
-
(2010)
J Pathol
, vol.222
, pp. 41-51
-
-
Weng, L.1
Wu, X.2
Gao, H.3
-
17
-
-
69749125028
-
Optimized protocol for gene expression analysis in formalin-fixed, paraffin-embedded tissue using real-time quantitative polymerase chain reaction
-
Votavova H, Forsterova K, Stritesky J, et al. Optimized protocol for gene expression analysis in formalin-fixed, paraffin-embedded tissue using real-time quantitative polymerase chain reaction. Diagn Mol Pathol. 2009;18:176-182.
-
(2009)
Diagn Mol Pathol
, vol.18
, pp. 176-182
-
-
Votavova, H.1
Forsterova, K.2
Stritesky, J.3
-
18
-
-
33644975004
-
RNA integrity and the effect on the real-time qRT-PCR performance
-
Fleige S, Pfaffl MW. RNA integrity and the effect on the real-time qRT-PCR performance. Mol Aspects Med. 2006;27:126-139.
-
(2006)
Mol Aspects Med
, vol.27
, pp. 126-139
-
-
Fleige, S.1
Pfaffl, M.W.2
-
19
-
-
33645241407
-
The RIN an RNA integrity number for assigning integrity values to RNA measure-ments
-
Schroeder A, Mueller O, Stocker S, et al. The RIN an RNA integrity number for assigning integrity values to RNA measure-ments. BMC Mol Biol. 2006;7:3.
-
(2006)
BMC Mol Biol
, vol.7
, pp. 3
-
-
Schroeder, A.1
Mueller, O.2
Stocker, S.3
-
20
-
-
77649229497
-
MRNA and microRNA quality control for RT-qPCR analysis
-
Becker C, Hammerle-Fickinger A, Riedmaier I, et al. mRNA and microRNA quality control for RT-qPCR analysis. Methods. 2010; 50:237-243.
-
(2010)
Methods
, vol.50
, pp. 237-243
-
-
Becker, C.1
Hammerle-Fickinger, A.2
Riedmaier, I.3
-
21
-
-
67650081389
-
Comparison of prognostic gene profiles using qRT-PCR in paraffin samples: A retrospective study in patients with early breast cancer
-
Espinosa E, Sanchez-Navarro I, Gamez-Pozo A, et al. Comparison of prognostic gene profiles using qRT-PCR in paraffin samples: a retrospective study in patients with early breast cancer. PLoS One. 2009;4:e5911.
-
(2009)
PLoS One
, vol.4
-
-
Espinosa, E.1
Sanchez-Navarro, I.2
Gamez-Pozo, A.3
-
22
-
-
77649089497
-
Molecular risk assessment of BIG 1-98 participants by expression profiling using RNA from archival tissue
-
Antonov J, Popovici V, Delorenzi M, et al. Molecular risk assessment of BIG 1-98 participants by expression profiling using RNA from archival tissue. BMC Cancer. 2010;10:37.
-
(2010)
BMC Cancer
, vol.10
, pp. 37
-
-
Antonov, J.1
Popovici, V.2
Delorenzi, M.3
-
23
-
-
33947535404
-
Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue
-
DOI 10.2353/jmoldx.2007.060004
-
Coudry RA, Meireles SI, Stoyanova R, et al. Successful application of microarray technology to microdissected formalin-fixed, paraffin-embeddedtissue. JMolDiagn. 2007;9:70-79. (Pubitemid 47322016)
-
(2007)
Journal of Molecular Diagnostics
, vol.9
, Issue.1
, pp. 70-79
-
-
Coudry, R.A.1
Meireles, S.I.2
Stoyanova, R.3
Cooper, H.S.4
Carpino, A.5
Wang, X.6
Engstrom, P.F.7
Clapper, M.L.8
-
24
-
-
58549091637
-
A novel approach for reliable microarray analysis of microdissected tumor cells from formalin-fixed and paraffin-embedded colorectal cancer resection specimens
-
Lassmann S, Kreutz C, Schoepflin A, et al. A novel approach for reliable microarray analysis of microdissected tumor cells from formalin-fixed and paraffin-embedded colorectal cancer resection specimens. JMolMed. 2009;87:211-224.
-
(2009)
JMolMed
, vol.87
, pp. 211-224
-
-
Lassmann, S.1
Kreutz, C.2
Schoepflin, A.3
-
25
-
-
77954377995
-
Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays
-
Abdueva D, Wing M, Schaub B, et al. Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays. JMolDiagn. 2010;12:409-417.
-
(2010)
JMolDiagn
, vol.12
, pp. 409-417
-
-
Abdueva, D.1
Wing, M.2
Schaub, B.3
-
26
-
-
41649119636
-
RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: A comparison of column purification and magnetic bead-based technologies
-
Ribeiro-Silva A, Zhang H, Jeffrey SS. RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies. BMC Mol Biol. 2007;8:118.
-
(2007)
BMC Mol Biol
, vol.8
, pp. 118
-
-
Ribeiro-Silva, A.1
Zhang, H.2
Jeffrey, S.S.3
-
27
-
-
47749085916
-
Optimization of the method of RNA isolation from paraffin blocks to assess gene expression in breast cancer
-
Jarzab M, Rozanowski P, Kowalska M, et al. Optimization of the method of RNA isolation from paraffin blocks to assess gene expression in breast cancer. Pol J Pathol. 2008;59:85-91. (Pubitemid 352029607)
-
(2008)
Polish Journal of Pathology
, vol.59
, Issue.2
, pp. 85-91
-
-
Jarzab, M.1
Rozanowski, P.2
Kowalska, M.3
Zebracka, J.4
Rudnicka, L.5
Stobiecka, E.6
Jarzab, B.7
Stachura, J.8
Pawlega, J.9
-
28
-
-
70349823244
-
Identification ofmethods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expressionprofiling
-
Roberts L, Bowers J, Sensinger K, et al. Identification ofmethods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expressionprofiling. Genomics. 2009;94:341-348.
-
(2009)
Genomics
, vol.94
, pp. 341-348
-
-
Roberts, L.1
Bowers, J.2
Sensinger, K.3
-
30
-
-
27144468030
-
Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization
-
DOI 10.1038/labinvest.3700303, PII 3700303
-
Antonov J, Goldstein DR, Oberli A, et al. Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization. Lab Invest. 2005;85:1040-1050. (Pubitemid 41486428)
-
(2005)
Laboratory Investigation
, vol.85
, Issue.8
, pp. 1040-1050
-
-
Antonov, J.1
Goldstein, D.R.2
Oberli, A.3
Baltzer, A.4
Pirotta, M.5
Fleischmann, A.6
Altermatt, H.J.7
Jaggi, R.8
-
31
-
-
0033775615
-
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
-
Bustin SA. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol. 2000;25:169-193.
-
(2000)
J Mol Endocrinol
, vol.25
, pp. 169-193
-
-
Bustin, S.A.1
-
32
-
-
0034694128
-
Effect of experimental treat-ment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
-
Schmittgen TD, Zakrajsek BA. Effect of experimental treat-ment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods. 2000;46: 69-81.
-
(2000)
J Biochem Biophys Methods
, vol.46
, pp. 69-81
-
-
Schmittgen, T.D.1
Zakrajsek, B.A.2
-
33
-
-
70349270564
-
Higher random oligo concentration improves reverse transcription yield of cDNA from bioptic tissues and quantitative RT-PCR reliability
-
Nardon E, Donada M, Bonin S, et al. Higher random oligo concentration improves reverse transcription yield of cDNA from bioptic tissues and quantitative RT-PCR reliability. Exp Mol Pathol. 2009;87:146-151.
-
(2009)
Exp Mol Pathol
, vol.87
, pp. 146-151
-
-
Nardon, E.1
Donada, M.2
Bonin, S.3
-
34
-
-
40049086211
-
Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials
-
Li J, Smyth P, Cahill S, et al. Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials. BMC Biotechnol. 2008;8:10.
-
(2008)
BMC Biotechnol
, vol.8
, pp. 10
-
-
Li, J.1
Smyth, P.2
Cahill, S.3
-
35
-
-
57649207038
-
Expression profiling with RNA from formalin-fixed, paraffin-embedded material
-
Oberli A, Popovici V, Delorenzi M, et al. Expression profiling with RNA from formalin-fixed, paraffin-embedded material. BMC Med Genomics. 2008;1:9.
-
(2008)
BMC Med Genomics
, vol.1
, pp. 9
-
-
Oberli, A.1
Popovici, V.2
Delorenzi, M.3
-
36
-
-
67649989073
-
Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors
-
Drury S, Anderson H, Dowsett M. Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors. Diagn Mol Pathol. 2009;18:103-107.
-
(2009)
Diagn Mol Pathol
, vol.18
, pp. 103-107
-
-
Drury, S.1
Anderson, H.2
Dowsett, M.3
-
37
-
-
65549147369
-
Reverse transcription-quantitative polymerase chain reaction: Description of a RIN-based algorithm for accurate data normalization
-
Ho-Pun-Cheung A, Bascoul-Mollevi C, Assenat E, et al. Reverse transcription-quantitative polymerase chain reaction: description of a RIN-based algorithm for accurate data normalization. BMC Mol Biol. 2009;10:31.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 31
-
-
Ho-Pun-Cheung, A.1
Bascoul-Mollevi, C.2
Assenat, E.3
|