-
1
-
-
21044447550
-
Analysis of evolution of exon-intron structure of eukaryotic genes
-
10.1093/bib/6.2.118, 15975222
-
Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV. Analysis of evolution of exon-intron structure of eukaryotic genes. Brief Bioinform 2005, 6:118-134. 10.1093/bib/6.2.118, 15975222.
-
(2005)
Brief Bioinform
, vol.6
, pp. 118-134
-
-
Rogozin, I.B.1
Sverdlov, A.V.2
Babenko, V.N.3
Koonin, E.V.4
-
2
-
-
29444439485
-
The biology of intron gain and loss
-
10.1016/j.tig.2005.10.006, 16290250
-
Jeffares DC, Mourier T, Penny D. The biology of intron gain and loss. Trends Genet 2006, 22:16-22. 10.1016/j.tig.2005.10.006, 16290250.
-
(2006)
Trends Genet
, vol.22
, pp. 16-22
-
-
Jeffares, D.C.1
Mourier, T.2
Penny, D.3
-
3
-
-
33748796735
-
Origin and evolution of spliceosomal introns
-
10.1146/annurev.genet.40.110405.090625, 17094737
-
Rodríguez-Trelles F, Tarrío R, Ayala FJ. Origin and evolution of spliceosomal introns. Annu Rev Genet 2006, 40:47-76. 10.1146/annurev.genet.40.110405.090625, 17094737.
-
(2006)
Annu Rev Genet
, vol.40
, pp. 47-76
-
-
Rodríguez-Trelles, F.1
Tarrío, R.2
Ayala, F.J.3
-
4
-
-
33644847698
-
The evolution of spliceosomal introns: patterns, puzzles and progress
-
Roy SW, Gilbert W. The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet 2006, 7:211-221.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
5
-
-
69249211050
-
Intron-dominated genomes of early ancestors of eukaryotes
-
10.1093/jhered/esp056, 2877545, 19617525
-
Koonin EV. Intron-dominated genomes of early ancestors of eukaryotes. J Hered 2009, 100:618-623. 10.1093/jhered/esp056, 2877545, 19617525.
-
(2009)
J Hered
, vol.100
, pp. 618-623
-
-
Koonin, E.V.1
-
6
-
-
56849118754
-
Where do introns come from?
-
10.1371/journal.pbio.0060283, 2586383, 19067485
-
Catania F, Lynch M. Where do introns come from?. PLoS Biol 2008, 6:e283. 10.1371/journal.pbio.0060283, 2586383, 19067485.
-
(2008)
PLoS Biol
, vol.6
-
-
Catania, F.1
Lynch, M.2
-
7
-
-
69249232118
-
Endogenous mechanisms for the origins of spliceosomal introns
-
10.1093/jhered/esp062, 2877546, 19635762
-
Catania F, Gao X, Scofield DG. Endogenous mechanisms for the origins of spliceosomal introns. J Hered 2009, 100:591-596. 10.1093/jhered/esp062, 2877546, 19635762.
-
(2009)
J Hered
, vol.100
, pp. 591-596
-
-
Catania, F.1
Gao, X.2
Scofield, D.G.3
-
8
-
-
0037387431
-
Messenger RNA surveillance and the evolutionary proliferation of introns
-
10.1093/molbev/msg068, 12654936
-
Lynch M, Kewalramani A. Messenger RNA surveillance and the evolutionary proliferation of introns. Mol Biol Evol 2003, 20:563-571. 10.1093/molbev/msg068, 12654936.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 563-571
-
-
Lynch, M.1
Kewalramani, A.2
-
9
-
-
0037197986
-
Intron evolution as a population-genetic process
-
10.1073/pnas.092595699, 122912, 11983904
-
Lynch M. Intron evolution as a population-genetic process. Proc Natl Acad Sci USA 2002, 99:6118-6123. 10.1073/pnas.092595699, 122912, 11983904.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
10
-
-
30744475434
-
The origins of eukaryotic gene structure
-
Lynch M. The origins of eukaryotic gene structure. Mol Biol Evol 2006, 23:450-468.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 450-468
-
-
Lynch, M.1
-
11
-
-
0036888952
-
The evolution of spliceosomal introns
-
10.1016/S0959-437X(02)00360-X, 12433585
-
Lynch M, Richardson AO. The evolution of spliceosomal introns. Curr Opin Genet Dev 2002, 12:701-710. 10.1016/S0959-437X(02)00360-X, 12433585.
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 701-710
-
-
Lynch, M.1
Richardson, A.O.2
-
12
-
-
59349107038
-
Mystery of intron gain: new data and new models
-
10.1016/j.tig.2008.11.004, 19070397
-
Roy SW, Irimia M. Mystery of intron gain: new data and new models. Trends Genet 2009, 25:67-73. 10.1016/j.tig.2008.11.004, 19070397.
-
(2009)
Trends Genet
, vol.25
, pp. 67-73
-
-
Roy, S.W.1
Irimia, M.2
-
13
-
-
34347389905
-
Three distinct modes of intron dynamics in the evolution of eukaryotes
-
10.1101/gr.6438607, 1899114, 17495008
-
Carmel L, Wolf YI, Rogozin IB, Koonin EV. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res 2007, 17:1034-1044. 10.1101/gr.6438607, 1899114, 17495008.
-
(2007)
Genome Res
, vol.17
, pp. 1034-1044
-
-
Carmel, L.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
14
-
-
80053442983
-
A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
-
10.1371/journal.pcbi.1002150, 3174169, 21935348
-
Csuros M, Rogozin IB, Koonin EV. A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes. PLoS Comput Biol 2011, 7:e1002150. 10.1371/journal.pcbi.1002150, 3174169, 21935348.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Csuros, M.1
Rogozin, I.B.2
Koonin, E.V.3
-
15
-
-
33845982198
-
Characterization of intron loss events in mammals
-
1716263, 17108319
-
Coulombe-Huntington J, Majewski J. Characterization of intron loss events in mammals. Genome Res 2007, 17:23-32. 1716263, 17108319.
-
(2007)
Genome Res
, vol.17
, pp. 23-32
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
16
-
-
14044252770
-
Patterns of intron gain and loss in fungi
-
10.1371/journal.pbio.0020422, 532390, 15562318
-
Nielsen CB, Friedman B, Birren B, Burge CB, Galagan JE. Patterns of intron gain and loss in fungi. PLoS Biol 2004, 2:e422. 10.1371/journal.pbio.0020422, 532390, 15562318.
-
(2004)
PLoS Biol
, vol.2
-
-
Nielsen, C.B.1
Friedman, B.2
Birren, B.3
Burge, C.B.4
Galagan, J.E.5
-
17
-
-
70849137211
-
Extensive, recent intron gains in Daphnia populations
-
10.1126/science.1179302, 19965475
-
Li W, Tucker AE, Sung W, Thomas WK, Lynch M. Extensive, recent intron gains in Daphnia populations. Science 2009, 326:1260-1262. 10.1126/science.1179302, 19965475.
-
(2009)
Science
, vol.326
, pp. 1260-1262
-
-
Li, W.1
Tucker, A.E.2
Sung, W.3
Thomas, W.K.4
Lynch, M.5
-
18
-
-
70349334101
-
Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes
-
10.1186/1471-2148-9-208, 2746811, 19698129
-
Ragg H, Kumar A, Köster K, Bentele C, Wang Y, Frese MA, Prib N, Krüger O. Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes. BMC Evol Biol 2009, 9:208. 10.1186/1471-2148-9-208, 2746811, 19698129.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 208
-
-
Ragg, H.1
Kumar, A.2
Köster, K.3
Bentele, C.4
Wang, Y.5
Frese, M.A.6
Prib, N.7
Krüger, O.8
-
19
-
-
68949199595
-
Evolutionary origin and functions of retrogene introns
-
10.1093/molbev/msp125, 19553367
-
Fablet M, Bueno M, Potrzebowski L, Kaessmann H. Evolutionary origin and functions of retrogene introns. Mol Biol Evol 2009, 26:2147-2156. 10.1093/molbev/msp125, 19553367.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2147-2156
-
-
Fablet, M.1
Bueno, M.2
Potrzebowski, L.3
Kaessmann, H.4
-
20
-
-
76749130220
-
Nonsense-mediated decay enables intron gain in Drosophila
-
10.1371/journal.pgen.1000819, 2809761, 20107520
-
Farlow A, Meduri E, Dolezal M, Hua L, Schlötterer C. Nonsense-mediated decay enables intron gain in Drosophila. PLoS Genet 2010, 6:e1000819. 10.1371/journal.pgen.1000819, 2809761, 20107520.
-
(2010)
PLoS Genet
, vol.6
-
-
Farlow, A.1
Meduri, E.2
Dolezal, M.3
Hua, L.4
Schlötterer, C.5
-
21
-
-
73949123826
-
Ubiquitous internal gene duplication and intron creation in eukaryotes
-
10.1073/pnas.0911093106, 2791625, 19926850
-
Gao X, Lynch M. Ubiquitous internal gene duplication and intron creation in eukaryotes. Proc Natl Acad Sci USA 2009, 106:20818-20823. 10.1073/pnas.0911093106, 2791625, 19926850.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 20818-20823
-
-
Gao, X.1
Lynch, M.2
-
22
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
10.1073/pnas.1232297100, 165846, 12777620
-
Roy SW, Fedorov A, Gilbert W. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc Natl Acad Sci USA 2003, 100:7158-7162. 10.1073/pnas.1232297100, 165846, 12777620.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
23
-
-
39749196163
-
Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon)
-
10.1093/molbev/msm278, 18089580
-
Loh YH, Brenner S, Venkatesh B. Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon). Mol Biol Evol 2008, 25:526-535. 10.1093/molbev/msm278, 18089580.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 526-535
-
-
Loh, Y.H.1
Brenner, S.2
Venkatesh, B.3
-
24
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
10.1126/science.1139158, 17615350
-
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 2007, 317:86-94. 10.1126/science.1139158, 17615350.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
Terry, A.7
Shapiro, H.8
Lindquist, E.9
Kapitonov, V.V.10
Jurka, J.11
Genikhovich, G.12
Grigoriev, I.V.13
Lucas, S.M.14
Steele, R.E.15
Finnerty, J.R.16
Technau, U.17
Martindale, M.Q.18
Rokhsar, D.S.19
-
25
-
-
33748797692
-
Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes
-
10.1093/molbev/msl061, 16847043
-
Roy SW, Irimia M, Penny D. Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes. Mol Biol Evol 2006, 23:1824-1827. 10.1093/molbev/msl061, 16847043.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1824-1827
-
-
Roy, S.W.1
Irimia, M.2
Penny, D.3
-
26
-
-
38349114864
-
Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues
-
Basu MK, Rogozin IB, Deusch O, Dagan T, Martin W, Koonin EV. Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues. Mol Biol Evol 2008, 25:111-119.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 111-119
-
-
Basu, M.K.1
Rogozin, I.B.2
Deusch, O.3
Dagan, T.4
Martin, W.5
Koonin, E.V.6
-
27
-
-
23844431910
-
A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes
-
10.1159/000084963, 16093683
-
Brandt J, Veith AM, Volff JN. A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes. Cytogenet Genome Res 2005, 110:307-317. 10.1159/000084963, 16093683.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 307-317
-
-
Brandt, J.1
Veith, A.M.2
Volff, J.N.3
-
28
-
-
33750151691
-
Computational characterization of multiple Gag-like human proteins
-
10.1016/j.tig.2006.09.006, 16979784
-
Campillos M, Doerks T, Shah PK, Bork P. Computational characterization of multiple Gag-like human proteins. Trends Genet 2006, 22:585-589. 10.1016/j.tig.2006.09.006, 16979784.
-
(2006)
Trends Genet
, vol.22
, pp. 585-589
-
-
Campillos, M.1
Doerks, T.2
Shah, P.K.3
Bork, P.4
-
29
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
10.1146/annurev.genet.40.110405.090448, 2167627, 18076328
-
Feschotte C, Pritham EJ. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 2007, 41:331-368. 10.1146/annurev.genet.40.110405.090448, 2167627, 18076328.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
30
-
-
33748936552
-
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes
-
10.1002/bies.20452, 16937363
-
Volff JN. Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays 2006, 28:913-922. 10.1002/bies.20452, 16937363.
-
(2006)
Bioessays
, vol.28
, pp. 913-922
-
-
Volff, J.N.1
-
31
-
-
62349089758
-
Molecular domestication of transposable elements: from detrimental parasites to useful host genes
-
10.1007/s00018-009-8376-3, 19132291
-
Sinzelle L, Izsvák Z, Ivics Z. Molecular domestication of transposable elements: from detrimental parasites to useful host genes. Cell Mol Life Sci 2009, 66:1073-1093. 10.1007/s00018-009-8376-3, 19132291.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 1073-1093
-
-
Sinzelle, L.1
Izsvák, Z.2
Ivics, Z.3
-
32
-
-
1542513556
-
Mobile elements: drivers of genome evolution
-
10.1126/science.1089670, 15016989
-
Kazazian HH. Mobile elements: drivers of genome evolution. Science 2004, 303:1626-1632. 10.1126/science.1089670, 15016989.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian, H.H.1
-
33
-
-
56849104634
-
Taxon sampling and the accuracy of phylogenetic analyses
-
Heath TA, Hedtke SM, Hillis DM. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol 2008, 46:239-257.
-
(2008)
J Syst Evol
, vol.46
, pp. 239-257
-
-
Heath, T.A.1
Hedtke, S.M.2
Hillis, D.M.3
-
34
-
-
58149178579
-
NCBI Reference Sequences: current status, policy and new initiatives
-
10.1093/nar/gkn721, 2686572, 18927115
-
Pruitt KD, Tatusova T, Klimke W, Maglott DR. NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 2009, 37:D32-D36. 10.1093/nar/gkn721, 2686572, 18927115.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pruitt, K.D.1
Tatusova, T.2
Klimke, W.3
Maglott, D.R.4
-
35
-
-
33846056843
-
Entrez Gene: gene-centered information at NCBI
-
10.1093/nar/gkl993, 1761442, 17148475
-
Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 2007, 35:D26-D31. 10.1093/nar/gkl993, 1761442, 17148475.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
36
-
-
0038518196
-
Phylogenomics: intersection of evolution and genomics
-
10.1126/science.1086292, 12805538
-
Eisen JA, Fraser CM. Phylogenomics: intersection of evolution and genomics. Science 2003, 300:1706-1707. 10.1126/science.1086292, 12805538.
-
(2003)
Science
, vol.300
, pp. 1706-1707
-
-
Eisen, J.A.1
Fraser, C.M.2
-
37
-
-
0035793899
-
Phylogenetics. Which mammalian supertree to bark up?
-
10.1126/science.1059434, 11253193
-
Springer MS, de Jong W. Phylogenetics. Which mammalian supertree to bark up?. Science 2001, 291:1709-1711. 10.1126/science.1059434, 11253193.
-
(2001)
Science
, vol.291
, pp. 1709-1711
-
-
Springer, M.S.1
de Jong, W.2
-
38
-
-
65249116423
-
Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals
-
10.1073/pnas.0809297106, 2655268, 19286970
-
Nishihara H, Maruyama S, Okada N. Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals. Proc Natl Acad Sci USA 2009, 106:5235-5240. 10.1073/pnas.0809297106, 2655268, 19286970.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5235-5240
-
-
Nishihara, H.1
Maruyama, S.2
Okada, N.3
-
39
-
-
66049159777
-
Mosaic retroposon insertion patterns in placental mammals
-
10.1101/gr.090647.108, 2675975, 19261842
-
Churakov G, Kriegs JO, Baertsch R, Zemann A, Brosius J, Schmitz J. Mosaic retroposon insertion patterns in placental mammals. Genome Res 2009, 19:868-875. 10.1101/gr.090647.108, 2675975, 19261842.
-
(2009)
Genome Res
, vol.19
, pp. 868-875
-
-
Churakov, G.1
Kriegs, J.O.2
Baertsch, R.3
Zemann, A.4
Brosius, J.5
Schmitz, J.6
-
40
-
-
1942498768
-
Evolutionary genomics of chromoviruses in eukaryotes
-
10.1093/molbev/msh057, 14739248
-
Gorinsek B, Gubensek F, Kordis D. Evolutionary genomics of chromoviruses in eukaryotes. Mol Biol Evol 2004, 21:781-798. 10.1093/molbev/msh057, 14739248.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 781-798
-
-
Gorinsek, B.1
Gubensek, F.2
Kordis, D.3
-
41
-
-
23844448999
-
Phylogenomic analysis of chromoviruses
-
10.1159/000084987, 16093707
-
Gorinsek B, Gubensek F, Kordis D. Phylogenomic analysis of chromoviruses. Cytogenet Genome Res 2005, 110:543-552. 10.1159/000084987, 16093707.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 543-552
-
-
Gorinsek, B.1
Gubensek, F.2
Kordis, D.3
-
42
-
-
15544363206
-
A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses
-
10.1016/j.gene.2004.12.017, 15777633
-
Kordis D. A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses. Gene 2005, 347:161-173. 10.1016/j.gene.2004.12.017, 15777633.
-
(2005)
Gene
, vol.347
, pp. 161-173
-
-
Kordis, D.1
-
43
-
-
46749157875
-
Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains
-
10.1186/1471-2148-8-176, 2443715, 18559114
-
Tadepally HD, Burger G, Aubry M. Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains. BMC Evol Biol 2008, 8:176. 10.1186/1471-2148-8-176, 2443715, 18559114.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 176
-
-
Tadepally, H.D.1
Burger, G.2
Aubry, M.3
-
44
-
-
80655143442
-
Gypsy and the birth of the SCAN domain
-
10.1128/JVI.00867-11, 21865395
-
Emerson RO, Thomas JH. Gypsy and the birth of the SCAN domain. J Virol 2011, 85:12043-12052. 10.1128/JVI.00867-11, 21865395.
-
(2011)
J Virol
, vol.85
, pp. 12043-12052
-
-
Emerson, R.O.1
Thomas, J.H.2
-
45
-
-
33750962013
-
Intron size, abundance, and distribution within untranslated regions of genes
-
10.1093/molbev/msl111, 16980575
-
Hong X, Scofield DG, Lynch M. Intron size, abundance, and distribution within untranslated regions of genes. Mol Biol Evol 2006, 23:2392-2404. 10.1093/molbev/msl111, 16980575.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2392-2404
-
-
Hong, X.1
Scofield, D.G.2
Lynch, M.3
-
46
-
-
60049093585
-
ASTD: The Alternative Splicing and Transcript Diversity database
-
10.1016/j.ygeno.2008.11.003, 19059335
-
Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigó R, Bork P, Doeberitz MK, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D. ASTD: The Alternative Splicing and Transcript Diversity database. Genomics 2009, 93:213-220. 10.1016/j.ygeno.2008.11.003, 19059335.
-
(2009)
Genomics
, vol.93
, pp. 213-220
-
-
Koscielny, G.1
Le Texier, V.2
Gopalakrishnan, C.3
Kumanduri, V.4
Riethoven, J.J.5
Nardone, F.6
Stanley, E.7
Fallsehr, C.8
Hofmann, O.9
Kull, M.10
Harrington, E.11
Boué, S.12
Eyras, E.13
Plass, M.14
Lopez, F.15
Ritchie, W.16
Moucadel, V.17
Ara, T.18
Pospisil, H.19
Herrmann, A.20
G Reich, J.21
Guigó, R.22
Bork, P.23
Doeberitz, M.K.24
Vilo, J.25
Hide, W.26
Apweiler, R.27
Thanaraj, T.A.28
Gautheret, D.29
more..
-
47
-
-
38049061206
-
Alternative splicing: current perspectives
-
10.1002/bies.20692, 18081010
-
Kim E, Goren A, Ast G. Alternative splicing: current perspectives. Bioessays 2008, 30:38-47. 10.1002/bies.20692, 18081010.
-
(2008)
Bioessays
, vol.30
, pp. 38-47
-
-
Kim, E.1
Goren, A.2
Ast, G.3
-
48
-
-
52949098749
-
Intronic Alus influence alternative splicing
-
10.1371/journal.pgen.1000204, 2533698, 18818740
-
Lev-Maor G, Ram O, Kim E, Sela N, Goren A, Levanon EY, Ast G. Intronic Alus influence alternative splicing. PLoS Genet 2008, 4:e1000204. 10.1371/journal.pgen.1000204, 2533698, 18818740.
-
(2008)
PLoS Genet
, vol.4
-
-
Lev-Maor, G.1
Ram, O.2
Kim, E.3
Sela, N.4
Goren, A.5
Levanon, E.Y.6
Ast, G.7
-
49
-
-
78649705889
-
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
-
10.1126/science.1194167, 21097902
-
Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, Cross I, Yadetie F, Muffato M, Louis A, Butcher S, Tsagkogeorga G, Konrad A, Singh S, Jensen MF, Cong EH, Eikeseth-Otteraa H, Noel B, Anthouard V, Porcel BM, Kachouri-Lafond R, Nishino A, Ugolini M, Chourrout P, Nishida H, Aasland R, Huzurbazar S, Westhof E, Delsuc F, Lehrach H, Reinhardt R, Weissenbach J, Roy SW, Artiguenave F, Postlethwait JH, Manak JR, Thompson EM, Jaillon O, Du Pasquier L, Boudinot P, Liberles DA, Volff JN, Philippe H, Lenhard B, Roest Crollius H, Wincker P, Chourrout D. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science 2010, 330:1381-1385. 10.1126/science.1194167, 21097902.
-
(2010)
Science
, vol.330
, pp. 1381-1385
-
-
Denoeud, F.1
Henriet, S.2
Mungpakdee, S.3
Aury, J.M.4
Da Silva, C.5
Brinkmann, H.6
Mikhaleva, J.7
Olsen, L.C.8
Jubin, C.9
Cañestro, C.10
Bouquet, J.M.11
Danks, G.12
Poulain, J.13
Campsteijn, C.14
Adamski, M.15
Cross, I.16
Yadetie, F.17
Muffato, M.18
Louis, A.19
Butcher, S.20
Tsagkogeorga, G.21
Konrad, A.22
Singh, S.23
Jensen, M.F.24
Cong, E.H.25
Eikeseth-Otteraa, H.26
Noel, B.27
Anthouard, V.28
Porcel, B.M.29
Kachouri-Lafond, R.30
Nishino, A.31
Ugolini, M.32
Chourrout, P.33
Nishida, H.34
Aasland, R.35
Huzurbazar, S.36
Westhof, E.37
Delsuc, F.38
Lehrach, H.39
Reinhardt, R.40
Weissenbach, J.41
Roy, S.W.42
Artiguenave, F.43
Postlethwait, J.H.44
Manak, J.R.45
Thompson, E.M.46
Jaillon, O.47
Du Pasquier, L.48
Boudinot, P.49
Liberles, D.A.50
Volff, J.N.51
Philippe, H.52
Lenhard, B.53
Roest Crollius, H.54
Wincker, P.55
Chourrout, D.56
more..
-
50
-
-
80052063301
-
A Jurassic eutherian mammal and divergence of marsupials and placentals
-
10.1038/nature10291, 21866158
-
Luo ZX, Yuan CX, Meng QJ, Ji Q. A Jurassic eutherian mammal and divergence of marsupials and placentals. Nature 2011, 476:442-445. 10.1038/nature10291, 21866158.
-
(2011)
Nature
, vol.476
, pp. 442-445
-
-
Luo, Z.X.1
Yuan, C.X.2
Meng, Q.J.3
Ji, Q.4
-
51
-
-
80055070300
-
Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification
-
10.1126/science.1211028, 21940861
-
Meredith RW, Janečka JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Simão TL, Stadler T, Rabosky DL, Honeycutt RL, Flynn JJ, Ingram CM, Steiner C, Williams TL, Robinson TJ, Burk-Herrick A, Westerman M, Ayoub NA, Springer MS, Murphy WJ. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 2011, 334:521-524. 10.1126/science.1211028, 21940861.
-
(2011)
Science
, vol.334
, pp. 521-524
-
-
Meredith, R.W.1
Janečka, J.E.2
Gatesy, J.3
Ryder, O.A.4
Fisher, C.A.5
Teeling, E.C.6
Goodbla, A.7
Eizirik, E.8
Simão, T.L.9
Stadler, T.10
Rabosky, D.L.11
Honeycutt, R.L.12
Flynn, J.J.13
Ingram, C.M.14
Steiner, C.15
Williams, T.L.16
Robinson, T.J.17
Burk-Herrick, A.18
Westerman, M.19
Ayoub, N.A.20
Springer, M.S.21
Murphy, W.J.22
more..
-
52
-
-
0038247862
-
High intron sequence conservation across three mammalian orders suggests functional constraints
-
10.1093/molbev/msg111, 12716984
-
Hare MP, Palumbi SR. High intron sequence conservation across three mammalian orders suggests functional constraints. Mol Biol Evol 2003, 20:969-978. 10.1093/molbev/msg111, 12716984.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 969-978
-
-
Hare, M.P.1
Palumbi, S.R.2
-
53
-
-
77949449291
-
Genome-wide functional analysis of human 5' untranslated region introns
-
2864569, 20222956
-
Cenik C, Derti A, Mellor JC, Berriz GF, Roth FP. Genome-wide functional analysis of human 5' untranslated region introns. Genome Biol 2010, 11:R29. 2864569, 20222956.
-
(2010)
Genome Biol
, vol.11
-
-
Cenik, C.1
Derti, A.2
Mellor, J.C.3
Berriz, G.F.4
Roth, F.P.5
-
54
-
-
33746218184
-
Evolution on the X chromosome: unusual patterns and processes
-
10.1038/nrg1914, 16847464
-
Vicoso B, Charlesworth B. Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet 2006, 7:645-653. 10.1038/nrg1914, 16847464.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 645-653
-
-
Vicoso, B.1
Charlesworth, B.2
-
55
-
-
0346728470
-
The X chromosome in population genetics
-
10.1038/nrg1247, 14708015
-
Schaffner SF. The X chromosome in population genetics. Nat Rev Genet 2004, 5:43-51. 10.1038/nrg1247, 14708015.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 43-51
-
-
Schaffner, S.F.1
-
56
-
-
0026447994
-
On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"
-
10.1073/pnas.89.22.10706, 50410, 1279691
-
Brosius J, Gould SJ. On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA". Proc Natl Acad Sci USA 1992, 89:10706-10710. 10.1073/pnas.89.22.10706, 50410, 1279691.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10706-10710
-
-
Brosius, J.1
Gould, S.J.2
-
57
-
-
0033289533
-
Genomes were forged by massive bombardments with retroelements and retrosequences
-
10.1023/A:1004018519722, 10952214
-
Brosius J. Genomes were forged by massive bombardments with retroelements and retrosequences. Genetica 1999, 107:209-238. 10.1023/A:1004018519722, 10952214.
-
(1999)
Genetica
, vol.107
, pp. 209-238
-
-
Brosius, J.1
-
58
-
-
77953197833
-
2X genomes - depth does matter
-
10.1186/gb-2010-11-2-r16, 2872876, 20144222
-
Milinkovitch MC, Helaers R, Depiereux E, Tzika AC, Gabaldon T. 2X genomes - depth does matter. Genome Biol 2010, 11:R16. 10.1186/gb-2010-11-2-r16, 2872876, 20144222.
-
(2010)
Genome Biol
, vol.11
-
-
Milinkovitch, M.C.1
Helaers, R.2
Depiereux, E.3
Tzika, A.C.4
Gabaldon, T.5
-
59
-
-
33846659488
-
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
-
10.1186/1741-7007-4-41, 1779365, 17156431
-
Gertz EM, Yu YK, Agarwala R, Schäffer AA, Altschul SF. Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol 2006, 4:41. 10.1186/1741-7007-4-41, 1779365, 17156431.
-
(2006)
BMC Biol
, vol.4
, pp. 41
-
-
Gertz, E.M.1
Yu, Y.K.2
Agarwala, R.3
Schäffer, A.A.4
Altschul, S.F.5
-
60
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
10.1093/bioinformatics/btm404, 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948. 10.1093/bioinformatics/btm404, 17846036.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
61
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
62
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
10.1093/sysbio/syq010, 20525638
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321. 10.1093/sysbio/syq010, 20525638.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
63
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
10.1093/molbev/msr121, 21546353
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 21546353.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
64
-
-
68049137533
-
Analysis of transposable element sequences using CENSOR and RepeatMasker
-
10.1007/978-1-59745-251-9_16, 19378152
-
Huda A, Jordan IK. Analysis of transposable element sequences using CENSOR and RepeatMasker. Methods Mol Biol 2009, 537:323-336. 10.1007/978-1-59745-251-9_16, 19378152.
-
(2009)
Methods Mol Biol
, vol.537
, pp. 323-336
-
-
Huda, A.1
Jordan, I.K.2
|