메뉴 건너뛰기




Volumn 37, Issue 14, 2011, Pages 1143-1150

Role of Mg2+ ions in protein kinase phosphorylation: Insights from molecular dynamics simulations of ATP-kinase complexes

Author keywords

Atp binding affinity; Magnesium ion; Molecular dynamics; Phosphorylation; Protein kinase

Indexed keywords

ACTIVE SITE; ATP-BINDING; BINDING AFFINITIES; MOLECULAR DYNAMICS SIMULATIONS; PHOSPHATE GROUP; PHOSPHORYL TRANSFER; PROTEIN KINASE; PROTEIN PHOSPHORYLATION; SIDE-CHAINS; TRANSITION STATE; TYROSINE RESIDUES;

EID: 81255169335     PISSN: 08927022     EISSN: 10290435     Source Type: Journal    
DOI: 10.1080/08927022.2011.561430     Document Type: Article
Times cited : (25)

References (23)
  • 1
    • 20444383859 scopus 로고    scopus 로고
    • Proteinphosphorylation in signaling - 50 years and counting
    • T. Pawson and J.D. Scott, Proteinphosphorylation in signaling - 50 years and counting, Trends. Biochem. Sci. 30 (2005), pp. 286-290.
    • (2005) Trends. Biochem. Sci. , vol.30 , pp. 286-290
    • Pawson, T.1    Scott, J.D.2
  • 2
    • 0037032835 scopus 로고    scopus 로고
    • The protein kinase complement of the human genome
    • DOI 10.1126/science.1075762
    • G. Manning, D.B. Whyte, R. Martinez, T. Hunter, and S. Sudarsanam, The protein kinase complement of the human genome, Science 298 (2002), pp. 1912-1934. (Pubitemid 35425239)
    • (2002) Science , vol.298 , Issue.5600 , pp. 1912-1934
    • Manning, G.1    Whyte, D.B.2    Martinez, R.3    Hunter, T.4    Sudarsanam, S.5
  • 3
    • 0021020469 scopus 로고
    • Autophosphorylation of phosphorylase kinase. Divalent metal cation and nucleotide dependency
    • P.C. Hallenbeck and D.A. Walsh, Autophosphorylation of phosphorylase kinase. Divalent metal cation and nucleotide dependency, J. Biol. Chem. 258 (1983), pp. 13493-13501. (Pubitemid 14204548)
    • (1983) Journal of Biological Chemistry , vol.258 , Issue.22 , pp. 13493-13501
    • Hallenbeck, P.C.1    Walsh, D.A.2
  • 4
    • 0029417049 scopus 로고
    • + -independent, autophosphorylation-dependent protein kinase
    • + -independent, autophosphorylation-dependent protein kinase, J. Protein. Chem. 14 (1995), pp. 747-752.
    • (1995) J Protein. Chem. , vol.14 , pp. 747-752
    • Yu, J.S.1    Lee, S.C.2    Yang, S.D.3
  • 5
    • 0029850471 scopus 로고    scopus 로고
    • High-resolution crystal structures of human cyclin-dependent kinase 2 with and without ATP: Bound waters and natural ligand as guides for inhibitor design
    • DOI 10.1021/jm960402a
    • U. Schulze-Gahmen, H.L. De Bondt, and S.H. Kim, High-resolution crystal structures of human cyclin-dependent kinase 2 with and without ATP: Bound waters and natural ligand as guides for inhibitordesign, J. Med. Chem. 39 (1996), pp. 4540-4546. (Pubitemid 26382837)
    • (1996) Journal of Medicinal Chemistry , vol.39 , Issue.23 , pp. 4540-4546
    • Schulze-Gahmen, U.1    De Bondt, H.L.2    Kim, S.-H.3
  • 8
    • 13444303958 scopus 로고    scopus 로고
    • How does the cAMP-dependent protein kinase catalyze the phosphorylation reaction: An ab Initio QM/MM study
    • DOI 10.1021/ja0464084
    • Y. Cheng, Y. Zhang, and JA. Mc Cammon, How does the CAMP-dependent protein kinase catalyze the phosphorylation reaction: An ab initio QM/MM study, J. Am. Chem. Soc. 127 (2005), pp. 1553-1562. (Pubitemid 40204531)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.5 , pp. 1553-1562
    • Cheng, Y.1    Zhang, Y.2    McCammon, J.A.3
  • 9
    • 14944366413 scopus 로고    scopus 로고
    • Phosphorylation of cytidine, deoxycytidine, and their analog monophosphates by human UMP/CMP kinase is differentially regulated by ATP and magnesium
    • DOI 10.1124/mol.104.006098
    • C.H. Hsu, J.Y. Liou, G.E. Dutschman, and Y.C. Cheng, Phosphorylation of cytidine, deoxycytidine, and their analog monophosphates by human ump/cmp kinase is differentially regulated by ATP and magnesium, Mol. Pharmacol. 67 (2005), pp. 806-814. (Pubitemid 40365328)
    • (2005) Molecular Pharmacology , vol.67 , Issue.3 , pp. 806-814
    • Hsu, C.-H.1    Liou, J.-Y.2    Dutschman, G.E.3    Cheng, Y.-C.4
  • 12
    • 70449931830 scopus 로고    scopus 로고
    • ATP conformations and ion binding modes in the active site of anthrax edema factor: A computational analysis
    • L. Martinez, E. Laine, T.E. Malliavin, M. Nilges, and A. Blondel, ATP conformations and ion binding modes in the active site of anthrax edema factor: A computational analysis, Proteins 77 (2009), pp. 971-983.
    • (2009) Proteins , vol.77 , pp. 971-983
    • Martinez, L.1    Laine, E.2    Malliavin, T.E.3    Nilges, M.4    Blondel, A.5
  • 13
    • 33947716119 scopus 로고    scopus 로고
    • Software news and update a semiempirical free energy force field with charge-based desolvation
    • DOI 10.1002/jcc.20634
    • R. Huey, G.M. Morris, A.J. Olson, and D.S. Goodsell, A semiempirical free energy force field with charge-based desolvation, J. Comput. Chem. 28 (2007), pp. 1145-1152. (Pubitemid 46506716)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.6 , pp. 1145-1152
    • Huey, R.1    Morris, G.M.2    Olson, A.J.3    Goodsell, D.S.4
  • 16
    • 46249092554 scopus 로고    scopus 로고
    • Gromacs 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • B. Hess, C. Kutzner, and D. Van, Gromacs 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation, J. Chem. Theory Comput. 4 (2008), pp. 435-447.
    • (2008) J Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van, D.3
  • 18
    • 0002775934 scopus 로고
    • Interaction models for water in relation to protein hydration
    • B Pullman, ed., Reidel Publishing Company, Reidel, Dordrect
    • H. Berendsen, J. Postma, W.F. van Gunsteren, and J. Hermans, Interaction models for water in relation to protein hydration, in Intermolecular Forces, B. Pullman, ed., Reidel Publishing Company, Reidel, Dordrect, 1981, pp. 331-342.
    • (1981) Intermolecular Forces , pp. 331-342
    • Berendsen, H.1    Postma, J.2    Van Gunsteren, W.F.3    Hermans, J.4
  • 23
    • 73349111930 scopus 로고    scopus 로고
    • Scoring ensembles of docked protein: Ligand interactions for virtual lead optimization
    • J.L. Paulsen and A.C. Anderson, Scoring ensembles of docked protein: Ligand interactions for virtual lead optimization, J. Chem. Inf. Model. 49 (2009), pp. 2813-2819.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2813-2819
    • Paulsen, J.L.1    Anderson, A.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.