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Volumn 12, Issue , 2011, Pages

AluScan: A method for genome-wide scanning of sequence and structure variations in the human genome

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 81155151513     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-564     Document Type: Article
Times cited : (19)

References (29)
  • 1
    • 0021127698 scopus 로고
    • Alu sequences are processed 7SL RNA genes
    • 10.1038/312171a0, 6209580
    • Ullu E, Tschudi C. Alu sequences are processed 7SL RNA genes. Nature 1984, 312:171-172. 10.1038/312171a0, 6209580.
    • (1984) Nature , vol.312 , pp. 171-172
    • Ullu, E.1    Tschudi, C.2
  • 2
    • 77956858478 scopus 로고    scopus 로고
    • A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
    • 10.1016/j.semcancer.2010.03.001, 2925057, 20307669
    • Konkel MK, Batzer MA. A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome. Semin Cancer Biol 2010, 20:211-221. 10.1016/j.semcancer.2010.03.001, 2925057, 20307669.
    • (2010) Semin Cancer Biol , vol.20 , pp. 211-221
    • Konkel, M.K.1    Batzer, M.A.2
  • 3
    • 79958117110 scopus 로고    scopus 로고
    • Distributions of transposable elements reveal hazardous zones in mammalian introns
    • 10.1371/journal.pcbi.1002046, 3088655, 21573203
    • Zhang Y, Romanish MT, Mager DL. Distributions of transposable elements reveal hazardous zones in mammalian introns. PLoS Comput Biol 2011, 7:e1002046. 10.1371/journal.pcbi.1002046, 3088655, 21573203.
    • (2011) PLoS Comput Biol , vol.7
    • Zhang, Y.1    Romanish, M.T.2    Mager, D.L.3
  • 4
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • 10.1038/nrg798, 11988762
    • Batzer MA, Deininger PL. Alu repeats and human genomic diversity. Nat Rev Genet 2002, 3:370-379. 10.1038/nrg798, 11988762.
    • (2002) Nat Rev Genet , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 6
    • 0344585056 scopus 로고    scopus 로고
    • Mobile elements and mammalian genome evolution
    • 10.1016/j.gde.2003.10.013, 14638329
    • Deininger PL, Moran JV, Batzer MA, Kazazian HH. Mobile elements and mammalian genome evolution. Curr Opin Genet Dev 2003, 13:651-658. 10.1016/j.gde.2003.10.013, 14638329.
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 651-658
    • Deininger, P.L.1    Moran, J.V.2    Batzer, M.A.3    Kazazian, H.H.4
  • 8
    • 33344461569 scopus 로고    scopus 로고
    • Alu-associated enhancement of single nucleotide polymorphisms in the human genome
    • Ng SK, Xue H. Alu-associated enhancement of single nucleotide polymorphisms in the human genome. Gene 2006, 368:110-116.
    • (2006) Gene , vol.368 , pp. 110-116
    • Ng, S.K.1    Xue, H.2
  • 13
    • 70349453711 scopus 로고    scopus 로고
    • Alternative-splicing in the exon-10 region of GABAA receptor β2 subunit gene: relationships between novel isoforms and psychotic disorders
    • 10.1371/journal.pone.0006977, 2741204, 19763268
    • Zhao C, Xu Z, Wang F, Chen J, Ng SK, Wong PW, Yu Z, Pun FW, Ren L, Lo WS, Tsang SY, Xue H. Alternative-splicing in the exon-10 region of GABAA receptor β2 subunit gene: relationships between novel isoforms and psychotic disorders. PLoS One 2009, 4:e6977. 10.1371/journal.pone.0006977, 2741204, 19763268.
    • (2009) PLoS One , vol.4
    • Zhao, C.1    Xu, Z.2    Wang, F.3    Chen, J.4    Ng, S.K.5    Wong, P.W.6    Yu, Z.7    Pun, F.W.8    Ren, L.9    Lo, W.S.10    Tsang, S.Y.11    Xue, H.12
  • 15
    • 0026669418 scopus 로고
    • Linkage mapping by simultaneous screening of multiple polymorphic loci using Alu oligonucleotide-directed PCR
    • 10.1073/pnas.89.18.8448, 49937, 1528850
    • Zietkiewicz E, Labuda M, Sinnett D, Glorieux FH, Labuda D. Linkage mapping by simultaneous screening of multiple polymorphic loci using Alu oligonucleotide-directed PCR. Proc Natl Acad Sci USA 1992, 89:8448-8451. 10.1073/pnas.89.18.8448, 49937, 1528850.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 8448-8451
    • Zietkiewicz, E.1    Labuda, M.2    Sinnett, D.3    Glorieux, F.H.4    Labuda, D.5
  • 16
    • 0029027218 scopus 로고
    • Inter-Alu polymerase chain reaction: advancements and applications
    • 10.1006/abio.1995.1338, 8572294
    • Kass DH, Batzer MA. Inter-Alu polymerase chain reaction: advancements and applications. Anal Biochem 1995, 228:185-193. 10.1006/abio.1995.1338, 8572294.
    • (1995) Anal Biochem , vol.228 , pp. 185-193
    • Kass, D.H.1    Batzer, M.A.2
  • 17
    • 0030004192 scopus 로고    scopus 로고
    • Detection of a mutator phenotype in cancer cells by inter-Alu polymerase chain reaction
    • Krajinovic M, Richer C, Labuda D, Sinnett D. Detection of a mutator phenotype in cancer cells by inter-Alu polymerase chain reaction. Cancer Res 1996, 56:2733-2737.
    • (1996) Cancer Res , vol.56 , pp. 2733-2737
    • Krajinovic, M.1    Richer, C.2    Labuda, D.3    Sinnett, D.4
  • 18
    • 27144559288 scopus 로고    scopus 로고
    • Inter-alu PCR detects high frequency of genetic alterations in glioma cells exposed to sub-lethal cisplatin
    • 10.1002/ijc.21057, 15912534
    • Srivastava T, Seth A, Datta K, Chosdol K, Chattopadhyay P, Sinha S. Inter-alu PCR detects high frequency of genetic alterations in glioma cells exposed to sub-lethal cisplatin. Int J Cancer 2005, 117:683-689. 10.1002/ijc.21057, 15912534.
    • (2005) Int J Cancer , vol.117 , pp. 683-689
    • Srivastava, T.1    Seth, A.2    Datta, K.3    Chosdol, K.4    Chattopadhyay, P.5    Sinha, S.6
  • 19
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • 10.1093/bioinformatics/btp324, 2705234, 19451168
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 78049514700 scopus 로고    scopus 로고
    • Whole human exome capture for high-throughput sequencing
    • 10.1139/G10-025, 20616878
    • Kim DW, Nam SH, Kim RN, Choi SH, Park HS. Whole human exome capture for high-throughput sequencing. Genome 2010, 53:568-574. 10.1139/G10-025, 20616878.
    • (2010) Genome , vol.53 , pp. 568-574
    • Kim, D.W.1    Nam, S.H.2    Kim, R.N.3    Choi, S.H.4    Park, H.S.5
  • 22
    • 33644551211 scopus 로고    scopus 로고
    • Analysis of newly identified low copy AluYj subfamily
    • 10.1266/ggs.80.415, 16501310
    • Park ES, Huh JW, Kim TH, Kwak KD, Kim W, Kim HS. Analysis of newly identified low copy AluYj subfamily. Genes Genet Syst 2005, 80:415-422. 10.1266/ggs.80.415, 16501310.
    • (2005) Genes Genet Syst , vol.80 , pp. 415-422
    • Park, E.S.1    Huh, J.W.2    Kim, T.H.3    Kwak, K.D.4    Kim, W.5    Kim, H.S.6
  • 23
    • 8744242187 scopus 로고    scopus 로고
    • Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
    • 10.1101/gr.2693004, 525682, 15520288
    • Price AL, Eskin E, Pevzner PA. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history. Genome Res 2004, 14:2245-2252. 10.1101/gr.2693004, 525682, 15520288.
    • (2004) Genome Res , vol.14 , pp. 2245-2252
    • Price, A.L.1    Eskin, E.2    Pevzner, P.A.3
  • 27
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • 10.1093/bioinformatics/btp394, 2781750, 19561018
    • Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 2009, 25:2865-2871. 10.1093/bioinformatics/btp394, 2781750, 19561018.
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.