-
1
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, et al. (2006) The consensus coding sequences of human breast and colorectal cancers. Science 314: 268-274.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
-
2
-
-
57749178613
-
Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations
-
Suad O, Rozenberg H, Brosh R, Diskin-Posner Y, Kessler N, et al. (2009) Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations. J Mol Biol 385: 249-265.
-
(2009)
J Mol Biol
, vol.385
, pp. 249-265
-
-
Suad, O.1
Rozenberg, H.2
Brosh, R.3
Diskin-Posner, Y.4
Kessler, N.5
-
3
-
-
84862757430
-
-
Available:. Accessed 2011 October
-
IARC TP53 Database website. 24 Available: http://www-p53.iarc.fr/Statistics.html. Accessed 2011 October.
-
IARC TP53 Database website
, vol.24
-
-
-
4
-
-
0031841384
-
IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools
-
Hainaut P, Hernandez T, Robinson A, Rodriguez-Tome P, Flores T, et al. (1998) IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools. Nucleic Acids Res 26: 205-213.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 205-213
-
-
Hainaut, P.1
Hernandez, T.2
Robinson, A.3
Rodriguez-Tome, P.4
Flores, T.5
-
5
-
-
0027994037
-
Analysis of the most representative tumour-derived p53 mutants reveals that changes in protein conformation are not correlated with loss of transactivation or inhibition of cell proliferation
-
Ory K, Legros Y, Auguin C, Soussi T, (1994) Analysis of the most representative tumour-derived p53 mutants reveals that changes in protein conformation are not correlated with loss of transactivation or inhibition of cell proliferation. EMBO J 13: 3496-3504.
-
(1994)
EMBO J
, vol.13
, pp. 3496-3504
-
-
Ory, K.1
Legros, Y.2
Auguin, C.3
Soussi, T.4
-
6
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations
-
Cho Y, Gorina S, Jeffrey PD, Pavletich NP, (1994) Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science 265: 346-355.
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
7
-
-
0031447171
-
Thermodynamic stability of wild-type and mutant p53 core domain
-
Bullock AN, Henckel J, DeDecker BS, Johnson CM, Nikolova PV, et al. (1997) Thermodynamic stability of wild-type and mutant p53 core domain. Proc Natl Acad Sci U S A 94: 14338-14342.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 14338-14342
-
-
Bullock, A.N.1
Henckel, J.2
DeDecker, B.S.3
Johnson, C.M.4
Nikolova, P.V.5
-
8
-
-
0034594995
-
Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy
-
Bullock AN, Henckel J, Fersht AR, (2000) Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy. Oncogene 19: 1245-1256.
-
(2000)
Oncogene
, vol.19
, pp. 1245-1256
-
-
Bullock, A.N.1
Henckel, J.2
Fersht, A.R.3
-
9
-
-
77953082029
-
Structural and functional implications of p53 missense cancer mutations
-
Tan Y, Luo R, (2009) Structural and functional implications of p53 missense cancer mutations. PMC Biophys 2: 5.
-
(2009)
PMC Biophys
, vol.2
, pp. 5
-
-
Tan, Y.1
Luo, R.2
-
10
-
-
0028242937
-
A temperature-sensitive mutant of human p53
-
Zhang W, Guo XY, Hu GY, Liu WB, Shay JW, et al. (1994) A temperature-sensitive mutant of human p53. EMBO J 13: 2535-2544.
-
(1994)
EMBO J
, vol.13
, pp. 2535-2544
-
-
Zhang, W.1
Guo, X.Y.2
Hu, G.Y.3
Liu, W.B.4
Shay, J.W.5
-
11
-
-
0042666825
-
Fibrillar aggregates of the tumor suppressor p53 core domain
-
Ishimaru D, Andrade LR, Teixeira LS, Quesado PA, Maiolino LM, et al. (2003) Fibrillar aggregates of the tumor suppressor p53 core domain. Biochemistry 42: 9022-9027.
-
(2003)
Biochemistry
, vol.42
, pp. 9022-9027
-
-
Ishimaru, D.1
Andrade, L.R.2
Teixeira, L.S.3
Quesado, P.A.4
Maiolino, L.M.5
-
12
-
-
0141645619
-
Conversion of wild-type p53 core domain into a conformation that mimics a hot-spot mutant
-
Ishimaru D, Maia LF, Maiolino LM, Quesado PA, Lopez PC, et al. (2003) Conversion of wild-type p53 core domain into a conformation that mimics a hot-spot mutant. J Mol Biol 333: 443-451.
-
(2003)
J Mol Biol
, vol.333
, pp. 443-451
-
-
Ishimaru, D.1
Maia, L.F.2
Maiolino, L.M.3
Quesado, P.A.4
Lopez, P.C.5
-
13
-
-
77249149930
-
Ligand binding and hydration in protein misfolding: insights from studies of prion and p53 tumor suppressor proteins
-
Silva JL, Vieira TC, Gomes MP, Bom AP, Lima LM, et al. (2010) Ligand binding and hydration in protein misfolding: insights from studies of prion and p53 tumor suppressor proteins. Acc Chem Res 43: 271-279.
-
(2010)
Acc Chem Res
, vol.43
, pp. 271-279
-
-
Silva, J.L.1
Vieira, T.C.2
Gomes, M.P.3
Bom, A.P.4
Lima, L.M.5
-
14
-
-
77449150586
-
The p53 core domain is a molten globule at low pH: functional implications of a partially unfolded structure
-
Bom AP, Freitas MS, Moreira FS, Ferraz D, Sanches D, et al. (2010) The p53 core domain is a molten globule at low pH: functional implications of a partially unfolded structure. J Biol Chem 285: 2857-2866.
-
(2010)
J Biol Chem
, vol.285
, pp. 2857-2866
-
-
Bom, A.P.1
Freitas, M.S.2
Moreira, F.S.3
Ferraz, D.4
Sanches, D.5
-
15
-
-
67650078274
-
Cognate DNA stabilizes the tumor suppressor p53 and prevents misfolding and aggregation
-
Ishimaru D, Ano Bom AP, Lima LM, Quesado PA, Oyama MF, et al. (2009) Cognate DNA stabilizes the tumor suppressor p53 and prevents misfolding and aggregation. Biochemistry 48: 6126-6135.
-
(2009)
Biochemistry
, vol.48
, pp. 6126-6135
-
-
Ishimaru, D.1
Ano Bom, A.P.2
Lima, L.M.3
Quesado, P.A.4
Oyama, M.F.5
-
16
-
-
0029815092
-
Regulation of mutant p53 temperature-sensitive DNA binding
-
Friedlander P, Legros Y, Soussi T, Prives C, (1996) Regulation of mutant p53 temperature-sensitive DNA binding. J Biol Chem 271: 25468-25478.
-
(1996)
J Biol Chem
, vol.271
, pp. 25468-25478
-
-
Friedlander, P.1
Legros, Y.2
Soussi, T.3
Prives, C.4
-
17
-
-
0036191959
-
Restoration of wild-type conformation and activity of a temperature-sensitive mutant of p53 (p53(V272M)) by the cytoprotective aminothiol WR1065 in the esophageal cancer cell line TE-1
-
North S, Pluquet O, Maurici D, El-Ghissassi F, Hainaut P, (2002) Restoration of wild-type conformation and activity of a temperature-sensitive mutant of p53 (p53(V272M)) by the cytoprotective aminothiol WR1065 in the esophageal cancer cell line TE-1. Mol Carcinog 33: 181-188.
-
(2002)
Mol Carcinog
, vol.33
, pp. 181-188
-
-
North, S.1
Pluquet, O.2
Maurici, D.3
El-Ghissassi, F.4
Hainaut, P.5
-
18
-
-
9144273328
-
Isolation of temperature-sensitive p53 mutations from a comprehensive missense mutation library
-
Shiraishi K, Kato S, Han SY, Liu W, Otsuka K, et al. (2004) Isolation of temperature-sensitive p53 mutations from a comprehensive missense mutation library. J Biol Chem 279: 348-355.
-
(2004)
J Biol Chem
, vol.279
, pp. 348-355
-
-
Shiraishi, K.1
Kato, S.2
Han, S.Y.3
Liu, W.4
Otsuka, K.5
-
19
-
-
36749036031
-
Dynamics of essential collective motions in proteins: theory
-
Stepanova M, (2007) Dynamics of essential collective motions in proteins: theory. Phys Rev E Stat Nonlin Soft Matter Phys 76: 051918.
-
(2007)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.76
, pp. 051918
-
-
Stepanova, M.1
-
20
-
-
0033587701
-
Hot-spot mutants of p53 core domain evince characteristic local structural changes
-
Wong KB, DeDecker BS, Freund SM, Proctor MR, Bycroft M, et al. (1999) Hot-spot mutants of p53 core domain evince characteristic local structural changes. Proc Natl Acad Sci U S A 96: 8438-8442.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 8438-8442
-
-
Wong, K.B.1
DeDecker, B.S.2
Freund, S.M.3
Proctor, M.R.4
Bycroft, M.5
-
21
-
-
0037418548
-
Structure, function, and aggregation of the zinc-free form of the p53 DNA binding domain
-
Butler JS, Loh SN, (2003) Structure, function, and aggregation of the zinc-free form of the p53 DNA binding domain. Biochemistry 42: 2396-2403.
-
(2003)
Biochemistry
, vol.42
, pp. 2396-2403
-
-
Butler, J.S.1
Loh, S.N.2
-
22
-
-
33748948050
-
Transcriptional activation of cyclooxygenase-2 by tumor suppressor p53 requires nuclear factor-kappaB
-
Benoit V, de Moraes E, Dar NA, Taranchon E, Bours V, et al. (2006) Transcriptional activation of cyclooxygenase-2 by tumor suppressor p53 requires nuclear factor-kappaB. Oncogene 25: 5708-5718.
-
(2006)
Oncogene
, vol.25
, pp. 5708-5718
-
-
Benoit, V.1
de Moraes, E.2
Dar, N.A.3
Taranchon, E.4
Bours, V.5
-
23
-
-
0037137646
-
Long-range effects of mutating R248 to Q/W in the p53 core domain
-
Noskov SY, Wright JD, Lim C, (2001) Long-range effects of mutating R248 to Q/W in the p53 core domain. J Phys Chem B 106: 13047-13057.
-
(2001)
J Phys Chem B
, vol.106
, pp. 13047-13057
-
-
Noskov, S.Y.1
Wright, J.D.2
Lim, C.3
-
24
-
-
34548757465
-
Mechanism of DNA-binding loss upon single-point mutation in p53
-
Wright JD, Lim C, (2007) Mechanism of DNA-binding loss upon single-point mutation in p53. J Biosci 32: 827-839.
-
(2007)
J Biosci
, vol.32
, pp. 827-839
-
-
Wright, J.D.1
Lim, C.2
-
26
-
-
0033600873
-
Molecular evolution of the thermosensitive PAb1620 epitope of human p53 by DNA shuffling
-
Xirodimas DP, Lane DP, (1999) Molecular evolution of the thermosensitive PAb1620 epitope of human p53 by DNA shuffling. J Biol Chem 274: 28042-28049.
-
(1999)
J Biol Chem
, vol.274
, pp. 28042-28049
-
-
Xirodimas, D.P.1
Lane, D.P.2
-
27
-
-
14644441639
-
MM/PBSA analysis of molecular dynamics simulations of bovine beta-lactoglobulin: free energy gradients in conformational transitions?
-
Fogolari F, Moroni E, Wojciechowski M, Baginski M, Ragona L, et al. (2005) MM/PBSA analysis of molecular dynamics simulations of bovine beta-lactoglobulin: free energy gradients in conformational transitions? Proteins 59: 91-103.
-
(2005)
Proteins
, vol.59
, pp. 91-103
-
-
Fogolari, F.1
Moroni, E.2
Wojciechowski, M.3
Baginski, M.4
Ragona, L.5
-
28
-
-
20444377245
-
Validation and use of the MM-PBSA approach for drug discovery
-
Kuhn B, Gerber P, Schulz-Gasch T, Stahl M, (2005) Validation and use of the MM-PBSA approach for drug discovery. J Med Chem 48: 4040-4048.
-
(2005)
J Med Chem
, vol.48
, pp. 4040-4048
-
-
Kuhn, B.1
Gerber, P.2
Schulz-Gasch, T.3
Stahl, M.4
-
29
-
-
74649083070
-
Ensemble-based virtual screening reveals dual-inhibitors for the p53-MDM2/MDMX interactions
-
Barakat K, Mane J, Friesen D, Tuszynski J, (2010) Ensemble-based virtual screening reveals dual-inhibitors for the p53-MDM2/MDMX interactions. J Mol Graph Model 28: 555-568.
-
(2010)
J Mol Graph Model
, vol.28
, pp. 555-568
-
-
Barakat, K.1
Mane, J.2
Friesen, D.3
Tuszynski, J.4
-
30
-
-
0028838002
-
Temperature sensitivity for conformation is an intrinsic property of wild-type p53
-
Hainaut P, Butcher S, Milner J, (1995) Temperature sensitivity for conformation is an intrinsic property of wild-type p53. Br J Cancer 71: 227-231.
-
(1995)
Br J Cancer
, vol.71
, pp. 227-231
-
-
Hainaut, P.1
Butcher, S.2
Milner, J.3
-
31
-
-
33751094082
-
Folding and misfolding mechanisms of the p53 DNA binding domain at physiological temperature
-
Butler JS, Loh SN, (2006) Folding and misfolding mechanisms of the p53 DNA binding domain at physiological temperature. Protein Sci 15: 2457-2465.
-
(2006)
Protein Sci
, vol.15
, pp. 2457-2465
-
-
Butler, J.S.1
Loh, S.N.2
-
32
-
-
61749092017
-
Structural domains and main-chain flexibility in prion proteins
-
Blinov N, Berjanskii M, Wishart DS, Stepanova M, (2009) Structural domains and main-chain flexibility in prion proteins. Biochemistry 48: 1488-1497.
-
(2009)
Biochemistry
, vol.48
, pp. 1488-1497
-
-
Blinov, N.1
Berjanskii, M.2
Wishart, D.S.3
Stepanova, M.4
-
33
-
-
80052790263
-
Comparative analysis of essential collective dynamics and NMR-derived flexibility profiles in evolutionarily diverse prion proteins
-
Santo KP, Berjanskii M, Wishart DS, Stepanova M, (2011) Comparative analysis of essential collective dynamics and NMR-derived flexibility profiles in evolutionarily diverse prion proteins. Prion 5: 188-200.
-
(2011)
Prion
, vol.5
, pp. 188-200
-
-
Santo, K.P.1
Berjanskii, M.2
Wishart, D.S.3
Stepanova, M.4
-
34
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
-
35
-
-
7144257184
-
Identification of an allosteric binding site on the transcription factor p53 using a phage-displayed peptide library
-
Ravera MW, Carcamo J, Brissette R, Alam-Moghe A, Dedova O, et al. (1998) Identification of an allosteric binding site on the transcription factor p53 using a phage-displayed peptide library. Oncogene 16: 1993-1999.
-
(1998)
Oncogene
, vol.16
, pp. 1993-1999
-
-
Ravera, M.W.1
Carcamo, J.2
Brissette, R.3
Alam-Moghe, A.4
Dedova, O.5
-
36
-
-
0035953392
-
The 'wildtype' conformation of p53: epitope mapping using hybrid proteins
-
Wang PL, Sait F, Winter G, (2001) The 'wildtype' conformation of p53: epitope mapping using hybrid proteins. Oncogene 20: 2318-2324.
-
(2001)
Oncogene
, vol.20
, pp. 2318-2324
-
-
Wang, P.L.1
Sait, F.2
Winter, G.3
-
37
-
-
0000514837
-
Transport, collective motion, and Brownian motion
-
Mori H, (1965) Transport, collective motion, and Brownian motion. Prog Theor Phys 33: 3.
-
(1965)
Prog Theor Phys
, vol.33
, pp. 3
-
-
Mori, H.1
-
38
-
-
84967025817
-
A continued-fraction representation of the time-correlation functions
-
Mori H, (1965) A continued-fraction representation of the time-correlation functions. Prog Theor Phys 34: 17.
-
(1965)
Prog Theor Phys
, vol.34
, pp. 17
-
-
Mori, H.1
-
39
-
-
84862755504
-
-
Available:. Accessed 2011 October
-
IARC website. 24 Available: http://www.iarc.fr/. Accessed 2011 October.
-
IARC website
, vol.24
-
-
-
40
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede T, Kopp J, Guex N, Peitsch MC, (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res 31: 3381-3385.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
41
-
-
3042679638
-
Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS
-
Grindon C, Harris S, Evans T, Novik K, Coveney P, et al. (2004) Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS. Philos Transact A Math Phys Eng Sci 362: 1373-1386.
-
(2004)
Philos Transact A Math Phys Eng Sci
, vol.362
, pp. 1373-1386
-
-
Grindon, C.1
Harris, S.2
Evans, T.3
Novik, K.4
Coveney, P.5
-
42
-
-
33748518255
-
Comparison of multiple Amber force fields and development of improved protein backbone parameters
-
Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, et al. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65: 712-725.
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
-
43
-
-
34547559704
-
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
-
Dolinsky TJ, Czodrowski P, Li H, Nielsen JE, Jensen JH, et al. (2007) PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35: W522-525.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 522-525
-
-
Dolinsky, T.J.1
Czodrowski, P.2
Li, H.3
Nielsen, J.E.4
Jensen, J.H.5
-
44
-
-
36649006642
-
Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms
-
Shao J, Tanner SW, Thompson N, Cheatham TE, (2007) Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. Journal of Chemical Theory and Computation 3: 2312.
-
(2007)
Journal of Chemical Theory and Computation
, vol.3
, pp. 2312
-
-
Shao, J.1
Tanner, S.W.2
Thompson, N.3
Cheatham, T.E.4
-
46
-
-
84862757431
-
-
Available:. Accessed 2011 October
-
Visual Molecular Dynamics (VMD) website. 24 Available: http://www.ks.uiuc.edu/Research/vmd/. Accessed 2011 October.
-
Visual Molecular Dynamics (VMD) website
, vol.24
-
-
-
47
-
-
0034521981
-
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, et al. (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 33: 889-897.
-
(2000)
Acc Chem Res
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
|