메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Exact score distribution computation for ontological similarity searches

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATIC METHODS; CLINICAL DIAGNOSIS; DISTRIBUTION COMPUTATIONS; EXACT DISTRIBUTION; ONTOLOGICAL SIMILARITIES; ORDERS OF MAGNITUDE; SEMANTIC SIMILARITY; STATISTICAL SIGNIFICANCE;

EID: 81055149924     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-441     Document Type: Article
Times cited : (13)

References (25)
  • 1
    • 85059356836 scopus 로고    scopus 로고
    • Chapman & Hall/CRC Mathematical & Computational Biology., Chapman & Hall
    • Robinson PN, Bauer S. Introduction to Bio-Ontologies 2011, Chapman & Hall/CRC Mathematical & Computational Biology., Chapman & Hall.
    • (2011) Introduction to Bio-Ontologies
    • Robinson, P.N.1    Bauer, S.2
  • 2
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: the Foundational Model of Anatomy
    • 10.1016/j.jbi.2003.11.007, 14759820
    • Rosse C, Mejino JLV. A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform 2003, 36(6):478-500. 10.1016/j.jbi.2003.11.007, 14759820.
    • (2003) J Biomed Inform , vol.36 , Issue.6 , pp. 478-500
    • Rosse, C.1    Mejino, J.L.V.2
  • 3
    • 22044443709 scopus 로고    scopus 로고
    • The Sequence Ontology: a tool for the unification of genome annotations
    • 10.1186/gb-2005-6-5-r44, 1175956, 15892872
    • Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M. The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol 2005, 6(5):R44. 10.1186/gb-2005-6-5-r44, 1175956, 15892872.
    • (2005) Genome Biol , vol.6 , Issue.5
    • Eilbeck, K.1    Lewis, S.E.2    Mungall, C.J.3    Yandell, M.4    Stein, L.5    Durbin, R.6    Ashburner, M.7
  • 4
    • 21944445759 scopus 로고    scopus 로고
    • An ontology for cell types
    • 10.1186/gb-2005-6-2-r21, 551541, 15693950
    • Bard J, Rhee SY, Ashburner M. An ontology for cell types. Genome Biol 2005, 6(2):R21. 10.1186/gb-2005-6-2-r21, 551541, 15693950.
    • (2005) Genome Biol , vol.6 , Issue.2
    • Bard, J.1    Rhee, S.Y.2    Ashburner, M.3
  • 6
    • 26844450908 scopus 로고    scopus 로고
    • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
    • 10.1186/gb-2005-6-5-p7, 549068, 15642099
    • Smith CL, Goldsmith CAW, Eppig JT. The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. Genome Biol 2005, 6:R7. 10.1186/gb-2005-6-5-p7, 549068, 15642099.
    • (2005) Genome Biol , vol.6
    • Smith, C.L.1    Goldsmith, C.A.W.2    Eppig, J.T.3
  • 7
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease
    • 10.1016/j.ajhg.2008.09.017, 2668030, 18950739
    • Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S. The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet 2008, 83(5):610-615. 10.1016/j.ajhg.2008.09.017, 2668030, 18950739.
    • (2008) Am J Hum Genet , vol.83 , Issue.5 , pp. 610-615
    • Robinson, P.N.1    Köhler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 8
    • 70349876268 scopus 로고    scopus 로고
    • Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease
    • 10.1007/s00335-009-9208-3, 2759022, 19649761
    • Hancock JM, Mallon AM, Beck T, Gkoutos GV, Mungall C, Schofield PN. Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. Mamm Genome 2009, 20(8):457-461. 10.1007/s00335-009-9208-3, 2759022, 19649761.
    • (2009) Mamm Genome , vol.20 , Issue.8 , pp. 457-461
    • Hancock, J.M.1    Mallon, A.M.2    Beck, T.3    Gkoutos, G.V.4    Mungall, C.5    Schofield, P.N.6
  • 9
    • 68249087607 scopus 로고    scopus 로고
    • Semantic similarity in biomedical ontologies
    • 10.1371/journal.pcbi.1000443, 2712090, 19649320
    • Pesquita C, Faria D, Falcao AO, Lord P, Couto FM. Semantic similarity in biomedical ontologies. PLoS Comput Biol 2009, 5(7):e1000443. 10.1371/journal.pcbi.1000443, 2712090, 19649320.
    • (2009) PLoS Comput Biol , vol.5 , Issue.7
    • Pesquita, C.1    Faria, D.2    Falcao, A.O.3    Lord, P.4    Couto, F.M.5
  • 10
    • 34548558977 scopus 로고    scopus 로고
    • Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications
    • 10.1093/bioinformatics/btm291, 17540677
    • Yu H, Jansen R, Stolovitzky G, Gerstein M. Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinformatics 2007, 23(16):2163-2173. 10.1093/bioinformatics/btm291, 17540677.
    • (2007) Bioinformatics , vol.23 , Issue.16 , pp. 2163-2173
    • Yu, H.1    Jansen, R.2    Stolovitzky, G.3    Gerstein, M.4
  • 11
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
    • 10.1093/bioinformatics/btg153, 12835272
    • Lord PW, Stevens RD, Brass A, Goble CA. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10):1275-1283. 10.1093/bioinformatics/btg153, 12835272.
    • (2003) Bioinformatics , vol.19 , Issue.10 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.A.4
  • 13
    • 34548130064 scopus 로고    scopus 로고
    • Quantitative assessment of relationship between sequence similarity and function similarity
    • 10.1186/1471-2164-8-222, 1949826, 17620139
    • Joshi T, Xu D. Quantitative assessment of relationship between sequence similarity and function similarity. BMC Genomics 2007, 8:222. 10.1186/1471-2164-8-222, 1949826, 17620139.
    • (2007) BMC Genomics , vol.8 , pp. 222
    • Joshi, T.1    Xu, D.2
  • 15
    • 58149312546 scopus 로고    scopus 로고
    • Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
    • 10.1186/1471-2105-9-472, 2612010, 18986551
    • Xu T, Du L, Zhou Y. Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data. BMC Bioinformatics 2008, 9:472. 10.1186/1471-2105-9-472, 2612010, 18986551.
    • (2008) BMC Bioinformatics , vol.9 , pp. 472
    • Xu, T.1    Du, L.2    Zhou, Y.3
  • 16
    • 33751393465 scopus 로고    scopus 로고
    • Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
    • 10.1186/1471-2105-7-491, 1660555, 17090318
    • Lei Z, Dai Y. Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction. BMC Bioinformatics 2006, 7:491. 10.1186/1471-2105-7-491, 1660555, 17090318.
    • (2006) BMC Bioinformatics , vol.7 , pp. 491
    • Lei, Z.1    Dai, Y.2
  • 19
    • 0002016474 scopus 로고    scopus 로고
    • Semantic similarity in a taxonomy: an information-based measure and its application to problems of ambiguity in natural language
    • Resnik P. Semantic similarity in a taxonomy: an information-based measure and its application to problems of ambiguity in natural language. Artificial Intelligence Research 1999, 11:95-130.
    • (1999) Artificial Intelligence Research , vol.11 , pp. 95-130
    • Resnik, P.1
  • 22
    • 49949096013 scopus 로고    scopus 로고
    • Gene Ontology term overlap as a measure of gene functional similarity
    • 10.1186/1471-2105-9-327, 2518162, 18680592
    • Mistry M, Pavlidis P. Gene Ontology term overlap as a measure of gene functional similarity. BMC Bioinformatics 2008, 9:327. 10.1186/1471-2105-9-327, 2518162, 18680592.
    • (2008) BMC Bioinformatics , vol.9 , pp. 327
    • Mistry, M.1    Pavlidis, P.2
  • 23
    • 77952684883 scopus 로고    scopus 로고
    • Revealing and avoiding bias in semantic similarity scores for protein pairs
    • 10.1186/1471-2105-11-290, 2903568, 20509916
    • Wang J, Zhou X, Zhu J, Zhou C, Guo Z. Revealing and avoiding bias in semantic similarity scores for protein pairs. BMC Bioinformatics 2010, 11:290. 10.1186/1471-2105-11-290, 2903568, 20509916.
    • (2010) BMC Bioinformatics , vol.11 , pp. 290
    • Wang, J.1    Zhou, X.2    Zhu, J.3    Zhou, C.4    Guo, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.