메뉴 건너뛰기




Volumn 23, Issue 16, 2007, Pages 2163-2173

Total ancestry measure: Quantifying the similarity in tree-like classification, with genomic applications

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; FUNCTIONAL PROTEOMICS; GENETIC DISTANCE; GENETIC SIMILARITY; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; QUANTITATIVE ANALYSIS; STATISTICAL SIGNIFICANCE;

EID: 34548558977     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm291     Document Type: Article
Times cited : (41)

References (32)
  • 3
    • 0034602774 scopus 로고    scopus 로고
    • Knowledge-based analysis of microarray gene expression data by using support vector machines
    • Brown,M.P. et al. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl. Acad. Sci. USA, 97, 262-267.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 262-267
    • Brown, M.P.1
  • 4
    • 0030297537 scopus 로고    scopus 로고
    • A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response
    • Cox,J.S. and Walter,P. (1996) A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response. Cell, 87, 391-404.
    • (1996) Cell , vol.87 , pp. 391-404
    • Cox, J.S.1    Walter, P.2
  • 5
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen,M.B. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 95 14863-14868.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1
  • 6
    • 33645821454 scopus 로고    scopus 로고
    • Assessing semantic similarity measures for the characterization of human regulatory pathways
    • Guo,X. et al. (2006) Assessing semantic similarity measures for the characterization of human regulatory pathways. Bioinformatics, 22, 967-973.
    • (2006) Bioinformatics , vol.22 , pp. 967-973
    • Guo, X.1
  • 8
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris,M.A. et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1
  • 9
    • 0034767547 scopus 로고    scopus 로고
    • Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
    • Hegyi,H. and Gerstein,M. (2001) Annotation transfer for genomics: measuring functional divergence in multi-domain proteins. Genome Res. 11, 1632-1640.
    • (2001) Genome Res , vol.11 , pp. 1632-1640
    • Hegyi, H.1    Gerstein, M.2
  • 10
    • 0035163058 scopus 로고    scopus 로고
    • The Hsp70-Ydj1 molecular chaperone represses the activity of the heme activator protein Hap1 in the absence of heme
    • Hon,T. et al. (2001) The Hsp70-Ydj1 molecular chaperone represses the activity of the heme activator protein Hap1 in the absence of heme. Mol. Cell. Biol., 21, 7923-7932.
    • (2001) Mol. Cell. Biol , vol.21 , pp. 7923-7932
    • Hon, T.1
  • 11
    • 0036894656 scopus 로고    scopus 로고
    • Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae
    • Horak,C.E. et al. (2002) Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. Genes Dev., 16, 3017-3033.
    • (2002) Genes Dev , vol.16 , pp. 3017-3033
    • Horak, C.E.1
  • 13
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting proteinprotein interactions from genomic data
    • Jansen,R. et al. (2003) A Bayesian networks approach for predicting proteinprotein interactions from genomic data. Science, 302, 449-453.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1
  • 14
    • 0029867572 scopus 로고    scopus 로고
    • EcoCyc: An encyclopedia of Escherichia coli genes and metabolism
    • Karp,P.D. et al. (1996) EcoCyc: An encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res., 24, 32-39.
    • (1996) Nucleic Acids Res , vol.24 , pp. 32-39
    • Karp, P.D.1
  • 15
    • 0032573163 scopus 로고    scopus 로고
    • Folding in vivo of a newly translated yeast cytosolic enzyme is mediated by the SSA class of cytosolic yeast Hsp70 proteins
    • Kim,S. et al. (1998) Folding in vivo of a newly translated yeast cytosolic enzyme is mediated by the SSA class of cytosolic yeast Hsp70 proteins. Proc. Natl. Acad. Sci. USA, 95, 12860-12865.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12860-12865
    • Kim, S.1
  • 16
    • 0029026540 scopus 로고
    • Role of the protein chaperone YDJ1 in establishing Hsp90-mediated signal transduction pathways
    • Kimura,Y. et al. (1995) Role of the protein chaperone YDJ1 in establishing Hsp90-mediated signal transduction pathways. Science, 268, 1362-1365.
    • (1995) Science , vol.268 , pp. 1362-1365
    • Kimura, Y.1
  • 17
    • 1442275858 scopus 로고    scopus 로고
    • Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions
    • Lan,N. et al. (2002) Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions. Proc. IEEE, 90, 1848-1858.
    • (2002) Proc. IEEE , vol.90 , pp. 1848-1858
    • Lan, N.1
  • 18
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee,T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 19
    • 33751393465 scopus 로고    scopus 로고
    • Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
    • Lei,Z. and Dai,Y. (2006) Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction. BMC Bioinformatics 7, 491.
    • (2006) BMC Bioinformatics , vol.7 , pp. 491
    • Lei, Z.1    Dai, Y.2
  • 21
    • 0036852181 scopus 로고    scopus 로고
    • Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons
    • Mateos,A. et al. (2002) Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons. Genome Res., 12, 1703-1715.
    • (2002) Genome Res , vol.12 , pp. 1703-1715
    • Mateos, A.1
  • 22
    • 33644875537 scopus 로고    scopus 로고
    • MIPS: Analysis and annotation of proteins from whole genomes in 2005
    • Mewes,H.W. et al. (2006) MIPS: Analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res., 34, D169-D172.
    • (2006) Nucleic Acids Res , vol.34
    • Mewes, H.W.1
  • 23
    • 0032926060 scopus 로고    scopus 로고
    • The CATH Database provides insights into protein structure/function relationships
    • Orengo,C.A. et al. (1999) The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res., 27, 275-279.
    • (1999) Nucleic Acids Res , vol.27 , pp. 275-279
    • Orengo, C.A.1
  • 25
    • 9044222118 scopus 로고    scopus 로고
    • Genes and proteins of Escherichia coli (GenProtEc)
    • Riley,M. and Space,D.B. (1996) Genes and proteins of Escherichia coli (GenProtEc). Nucleic Acids Res., 24, 40.
    • (1996) Nucleic Acids Res , vol.24 , pp. 40
    • Riley, M.1    Space, D.B.2
  • 26
    • 9144257282 scopus 로고    scopus 로고
    • The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
    • Ruepp,A. et al. (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res., 32, 5539-5545.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5539-5545
    • Ruepp, A.1
  • 27
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman,P. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.1
  • 30
    • 0034677669 scopus 로고    scopus 로고
    • Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
    • Wilson,C.A. et al. (2000) Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J. Mol. Biol., 297, 233-249.
    • (2000) J. Mol. Biol , vol.297 , pp. 233-249
    • Wilson, C.A.1
  • 31
    • 0036649020 scopus 로고    scopus 로고
    • Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
    • Wu,L.F. et al. (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat. Genet., 31, 255-265.
    • (2002) Nat. Genet , vol.31 , pp. 255-265
    • Wu, L.F.1
  • 32
    • 33646358998 scopus 로고    scopus 로고
    • Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations
    • Wu,X. et al. (2006) Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations. Nucleic Acids Res., 34, 2137-2150.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2137-2150
    • Wu, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.