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Volumn 5724 LNBI, Issue , 2009, Pages 298-309

Exact score distribution computation for similarity searches in ontologies

Author keywords

[No Author keywords available]

Indexed keywords

EXACT COMPUTATIONS; GENE ONTOLOGY; NULL HYPOTHESIS; ONTOLOGY GRAPHS; ORDERS OF MAGNITUDE; P-VALUES; PROTEIN FUNCTION PREDICTION; SEMANTIC SIMILARITY; SIMILARITY SCORES; SIMILARITY SEARCH; STATISTICAL SIGNIFICANCE; SUBGRAPHS;

EID: 70350350200     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-04241-6_25     Document Type: Conference Paper
Times cited : (4)

References (12)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nature Genet. 25, 25-29 (2000)
    • (2000) Nature Genet , vol.25 , pp. 25-29
  • 2
    • 26844450908 scopus 로고    scopus 로고
    • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
    • Smith, C.L., Goldsmith, C.A.W., Eppig, J.T.: The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. Genome Biol. 6(1), R7 (2005)
    • (2005) Genome Biol , vol.6 , Issue.1
    • Smith, C.L.1    Goldsmith, C.A.W.2    Eppig, J.T.3
  • 3
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
    • Robinson, P.N., Köhler, S., Bauer, S., Seelow, D., Horn, D., Mundlos, S.: The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am. J. Hum. Genet. 83(5), 610-615 (2008)
    • (2008) Am. J. Hum. Genet , vol.83 , Issue.5 , pp. 610-615
    • Robinson, P.N.1    Köhler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 4
  • 6
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • Lord, P.W., Stevens, R.D., Brass, A., Goble, C.A.: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 19(10), 1275-1283 (2003)
    • (2003) Bioinformatics , vol.19 , Issue.10 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.A.4
  • 7
    • 34548130064 scopus 로고    scopus 로고
    • Quantitative assessment of relationship between sequence similarity and function similarity
    • Joshi, T., Xu, D.: Quantitative assessment of relationship between sequence similarity and function similarity. BMC Genomics 9(8), 222 (2007)
    • (2007) BMC Genomics , vol.9 , Issue.8 , pp. 222
    • Joshi, T.1    Xu, D.2
  • 8
    • 0002016474 scopus 로고    scopus 로고
    • Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language
    • Resnik, P.: Semantic similarity in a taxonomy: an information-based measure and its application to problems of ambiguity in natural language. Artificial Intelligence Research 11, 95-130 (1999)
    • (1999) Artificial Intelligence Research , vol.11 , pp. 95-130
    • Resnik, P.1
  • 9
    • 47149083877 scopus 로고    scopus 로고
    • Metrics for GO based protein semantic similarity: A systematic evaluation
    • S
    • Pesquita, C., Faria, D., Bastos, H., Ferreira, A., Falco, A., Couto, F.: Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformat-ics 9(suppl. 5), S4 (2008)
    • (2008) BMC Bioinformat-ics , vol.9 , Issue.SUPPL. 5 , pp. 4
    • Pesquita, C.1    Faria, D.2    Bastos, H.3    Ferreira, A.4    Falco, A.5    Couto, F.6
  • 12
    • 8444226033 scopus 로고    scopus 로고
    • Efficient exact p-value computation for small sample, sparse, and surprising categorical data
    • Bejerano, G., Friedman, N., Tishby, N.: Efficient exact p-value computation for small sample, sparse, and surprising categorical data. Journal of Computational Biology 11(5), 867-886 (2004)
    • (2004) Journal of Computational Biology , vol.11 , Issue.5 , pp. 867-886
    • Bejerano, G.1    Friedman, N.2    Tishby, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.