메뉴 건너뛰기




Volumn 11, Issue , 2011, Pages

Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii

Author keywords

[No Author keywords available]

Indexed keywords

EXOPOLYSACCHARIDE; FATTY ACID; HEAT SHOCK PROTEIN; MACROGOL 8000; SODIUM CHLORIDE; TRANSCRIPTOME; TREHALOSE; MACROGOL DERIVATIVE; WATER;

EID: 81055148241     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-250     Document Type: Article
Times cited : (36)

References (50)
  • 1
    • 14344253830 scopus 로고    scopus 로고
    • Biodiversity of dioxin-degrading microorganisms and potential utilization in bioremediation
    • Biodiversity of dioxin-degrading microorganisms and potential utilization in bioremediation. Hiraishi A, Microbes Environ 2003 18 105 125
    • (2003) Microbes Environ , vol.18 , pp. 105-125
    • Hiraishi, A.1
  • 4
    • 0031859323 scopus 로고    scopus 로고
    • Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
    • Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome. Armengaud J, Happe B, Timmis KN, J Bacteriol 1998 180 3954 3966 (Pubitemid 28361593)
    • (1998) Journal of Bacteriology , vol.180 , Issue.15 , pp. 3954-3966
    • Armengaud, J.1    Happe, B.2    Timmis, K.N.3
  • 5
    • 0031804925 scopus 로고    scopus 로고
    • Degradation of dioxin-like compounds by microorganisms
    • Degradation of dioxin-like compounds by microorganisms. Wittich RM, Appl Microbiol Biotechnol 1998 49 489 499
    • (1998) Appl Microbiol Biotechnol , vol.49 , pp. 489-499
    • Wittich, R.M.1
  • 6
    • 0032924492 scopus 로고    scopus 로고
    • Removal of dibenzofuran, dibenzo-p-dioxin, and 2-chlorodibenzo-p-dioxin from soils inoculated with Sphingomonas sp strain RW1
    • Removal of dibenzofuran, dibenzo-p-dioxin, and 2-chlorodibenzo-p-dioxin from soils inoculated with Sphingomonas sp strain RW1. Halden RU, Halden BG, Dwyer DF, Appl Environ Microbiol 1999 65 2246 2249
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2246-2249
    • Halden, R.U.1    Halden, B.G.2    Dwyer, D.F.3
  • 7
    • 85101947152 scopus 로고
    • Effect of water potential on microbial growth and activity
    • Madison: Soil Science Society of America Parr JF, Gardner WR, Elliot LF
    • Effect of water potential on microbial growth and activity. Harris RF, Water Potential Relations in Soil Microbiology. SSA Special Publication Number 9 Madison: Soil Science Society of America, Parr JF, Gardner WR, Elliot LF, 1981 23 96
    • (1981) Water Potential Relations in Soil Microbiology. SSA Special Publication Number 9 , pp. 23-96
    • Harris, R.F.1
  • 8
    • 0030671477 scopus 로고    scopus 로고
    • Water stress effects on toluene biodegradation by Pseudomonas putida
    • DOI 10.1023/A:1008237819089
    • Water stress effects on toluene biodegradation by Pseudomonas putida. Holden PA, Halverson LJ, Firestone MK, Biodegradation 1997 8 143 151 (Pubitemid 27510249)
    • (1997) Biodegradation , vol.8 , Issue.3 , pp. 143-151
    • Holden, P.A.1    Halverson, L.J.2    Firestone, M.K.3
  • 9
    • 0027948550 scopus 로고
    • Desiccation tolerance of prokaryotes
    • Desiccation tolerance of prokaryotes. Potts M, Microbiol Rev 1994 58 755 805
    • (1994) Microbiol Rev , vol.58 , pp. 755-805
    • Potts, M.1
  • 10
    • 0024557026 scopus 로고
    • Physiological and genetic responses of bacteria to osmotic stress
    • Physiological and genetic responses of bacteria to osmotic stress. Csonka LN, Microbiol Rev 1989 53 121 147 (Pubitemid 19080950)
    • (1989) Microbiological Reviews , vol.53 , Issue.1 , pp. 121-147
    • Csonka, L.N.1
  • 12
    • 0034032756 scopus 로고    scopus 로고
    • Ecological significance of compatible solute accumulation by micro- organisms: From single cells to global climate
    • DOI 10.1016/S0168-6445(99)00038-8, PII S0168644599000388
    • Ecological significance of compatible solute accumulation by microorganisms: from single cells to global climate. Welsh DT, FEMS Microbiol Rev 2000 24 263 290 (Pubitemid 30332360)
    • (2000) FEMS Microbiology Reviews , vol.24 , Issue.3 , pp. 263-290
    • Welsh, D.T.1
  • 13
    • 0034130240 scopus 로고    scopus 로고
    • Differential effects of permeating and nonpermeating solutes on the fatty acid composition of Pseudomonas putida
    • DOI 10.1128/AEM.66.6.2414-2421.2000
    • Differential effects of permeating and nonpermeating solutes on the fatty acid composition of Pseudomonas putida. Halverson LJ, Firestone MK, Appl Environ Microbiol 2000 66 2414 2421 (Pubitemid 30353946)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.6 , pp. 2414-2421
    • Halverson, L.J.1    Firestone, M.K.2
  • 14
    • 0026615649 scopus 로고
    • Relationship between desiccation and exopolysaccharide production in a soil Pseudomonas sp.
    • Relationship between desiccation and exopolysaccharide production in a soil Pseudomonas sp. Roberson EB, Firestone MK, Appl Environ Microbiol 1992 58 1284 1291 (Pubitemid 23400429)
    • (1992) Applied & Environmental Microbiology , vol.58 , Issue.4 , pp. 1284-1291
    • Roberson, E.B.1    Firestone, M.K.2
  • 16
    • 2442517356 scopus 로고    scopus 로고
    • Cell envelope components contributing to biofilm growth and survival of Pseudomonas putida in low-water-content habitats
    • DOI 10.1111/j.1365-2958.2004.04008.x
    • Cell envelope components contributing to biofilm growth and survival of Pseudomonas putida in low-water-content habitats. van de Mortel M, Halverson LJ, Mol Microbiol 2004 52 735 750 (Pubitemid 38621744)
    • (2004) Molecular Microbiology , vol.52 , Issue.3 , pp. 735-750
    • Van De Mortel, M.1    Halverson, L.J.2
  • 17
  • 18
  • 19
    • 0029895359 scopus 로고    scopus 로고
    • Physiological response of Pseudomonas putida S12 subjected to reduced water activity
    • DOI 10.1016/0378-1097(96)00131-0
    • Physiological response of Pseudomonas putida S12 subjected to reduced water activity. Kets EPW, de Bont JAM, Heipieper HJ, FEMS Microbiol Lett 1996 139 133 137 (Pubitemid 26200309)
    • (1996) FEMS Microbiology Letters , vol.139 , Issue.2-3 , pp. 133-137
    • Kets, E.P.W.1    De Bont, J.A.M.2    Heipieper, H.J.3
  • 20
    • 0142214662 scopus 로고    scopus 로고
    • Genome-Wide Transcriptional Profiling Analysis of Adaptation of Bacillus subtilis to High Salinity
    • DOI 10.1128/JB.185.21.6358-6370.2003
    • Genome-wide transcription profiling analysis of adaptation of Bacillus subtilis to high salinity. Steil L, Hoffmann T, Budde I, Volker U, Bremer E, J Bacteriol 2003 185 6358 6370 (Pubitemid 37305536)
    • (2003) Journal of Bacteriology , vol.185 , Issue.21 , pp. 6358-6370
    • Steil, L.1    Hoffmann, T.2    Budde, I.3    Volker, U.4    Bremer, E.5
  • 22
    • 33750455848 scopus 로고    scopus 로고
    • Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti
    • DOI 10.1128/JB.00719-06
    • Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti. Domínguez-Ferreras A, Pérez-Arnedo R, Becker A, Olivares J, Soto MJ, Sanjuán J, J Bacteriol 2006 188 7617 7625 (Pubitemid 44646261)
    • (2006) Journal of Bacteriology , vol.188 , Issue.21 , pp. 7617-7625
    • Dominguez-Ferreras, A.1    Perez-Arnedo, R.2    Becker, A.3    Olivares, J.4    Soto, M.J.5    Sanjuan, J.6
  • 25
    • 43049126811 scopus 로고    scopus 로고
    • Global response to desiccation stress in the soil actinomycete Rhodococcus jostii RHA1
    • DOI 10.1128/AEM.02711-07
    • Global response to desiccation stress in the soil actinomycete Rhodococcus jostii RHA1. LeBlanc JC, Goncalves ER, Mohn WW, Appl Environ Microbiol 2008 74 2627 2636 (Pubitemid 351632593)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.9 , pp. 2627-2636
    • LeBlanc, J.C.1    Goncalves, E.R.2    Mohn, W.W.3
  • 26
    • 0002236515 scopus 로고
    • Evaluation of the water potentials of solutions of polyethylene glycol 8000 both in the absence and presence of other solutes
    • Evaluation of the water potentials of solutions of polyethylene glycol 8000 both in the absence and presence of other solutes. Michel BE, Plant Physiol 1983 72 66 70
    • (1983) Plant Physiol , vol.72 , pp. 66-70
    • Michel, B.E.1
  • 27
    • 43049147593 scopus 로고    scopus 로고
    • Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase
    • DOI 10.1128/AEM.02208-07
    • Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L, Appl Environ Microbiol 2008 74 2864 2872 (Pubitemid 351632617)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.9 , pp. 2864-2872
    • Johnson, D.R.1    Brodie, E.L.2    Hubbard, A.E.3    Andersen, G.L.4    Zinder, S.H.5    Alvarez-Cohen, L.6
  • 28
    • 17444407072 scopus 로고    scopus 로고
    • YODA: Selecting signature oligonucleotides
    • DOI 10.1093/bioinformatics/bti182
    • YODA: selecting signature oligonucleotides. Nordberg EK, Bioinformatics 2005 21 1365 1370 (Pubitemid 40542686)
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1365-1370
    • Nordberg, E.K.1
  • 30
    • 22144451860 scopus 로고    scopus 로고
    • An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene
    • DOI 10.1128/AEM.71.7.3866-3871.2005
    • An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Johnson DR, Lee PKH, Holmes VF, Alvarez-Cohen L, Appl Environ Microbiol 2005 71 3866 3871 (Pubitemid 40980557)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.7 , pp. 3866-3871
    • Johnson, D.R.1    Lee, P.K.H.2    Holmes, V.F.3    Alvarez-Cohen, L.4
  • 32
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing. Benjamini Y, Hochberg Y, J R Stat Soc Ser B 1995 57 289 300
    • (1995) J R Stat Soc ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 33
    • 33845261493 scopus 로고
    • A rapid method of total lipid extraction and purification
    • A rapid method of total lipid extraction and purification. Bligh EG, Dyer WJ, Can J Biochem Physiol 1959 37 911 917
    • (1959) Can J Biochem Physiol , vol.37 , pp. 911-917
    • Bligh, E.G.1    Dyer, W.J.2
  • 34
    • 4243190715 scopus 로고
    • Preparation of fatty acid methyl esters and dimethylacetals from lipids with boron fluoride-methanol
    • Preparation of fatty acid methyl esters and dimethylacetals from lipids with boron fluoride-methanol. Morrison WR, Smith LM, J Lipid Res 1964 5 600 608
    • (1964) J Lipid Res , vol.5 , pp. 600-608
    • Morrison, W.R.1    Smith, L.M.2
  • 35
    • 16544395545 scopus 로고    scopus 로고
    • Simultaneous Degradation of Atrazine and Phenol by Pseudomonas sp. Strain ADP: Effects of Toxicity and Adaptation
    • DOI 10.1128/AEM.70.4.1907-1912.2004
    • Simultaneous degradation of atrazine and phenol by Pseudomonas sp. strain ADP: effects of toxicity and adaptation. Neumann G, Teras R, Monson L, Kivisaar M, Schauer F, Heipieper HJ, Appl Environ Microbiol 2004 70 1907 1912 (Pubitemid 38500486)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.4 , pp. 1907-1912
    • Neumann, G.1    Teras, R.2    Monson, L.3    Kivisaar, M.4    Schauer, F.5    Heipieper, H.J.6
  • 37
    • 0036239754 scopus 로고    scopus 로고
    • Bacterial osmoadaptation: The role of osmolytes in bacterial stress and virulence
    • DOI 10.1016/S0168-6445(01)00071-7, PII S0168644501000717
    • Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence. Sleator RD, Hill C, FEMS Microbiol Rev 2002 26 49 71 (Pubitemid 34454775)
    • (2002) FEMS Microbiology Reviews , vol.26 , Issue.1 , pp. 49-71
    • Sleator, R.D.1    Hill, C.2
  • 38
    • 0028097873 scopus 로고
    • A role for exopolysaccharides in the protection of microorganisms from desiccation
    • A role for exopolysaccharides in the protection of microorganisms from desiccation. Ophir T, Gutnick DL, Appl Environ Microbiol 1994 60 740 745 (Pubitemid 24045225)
    • (1994) Applied and Environmental Microbiology , vol.60 , Issue.2 , pp. 740-745
    • Ophir, T.1    Gutnick, D.L.2
  • 39
    • 41049113864 scopus 로고    scopus 로고
    • Role of outer membrane lipopolysaccharides in the protection of Salmonella enterica serovar Typhimurium from desiccation damage
    • DOI 10.1111/j.1574-6968.2008.01093.x
    • Role of outer membrane lipopolysaccharides in the protection of Salmonella enterica serovar Typhimurium from desiccation damage. Garmiri P, Coles KE, Humphrey TJ, Cogan TA, FEMS Microbiol Lett 2008 281 155 159 (Pubitemid 351422942)
    • (2008) FEMS Microbiology Letters , vol.281 , Issue.2 , pp. 155-159
    • Garmiri, P.1    Coles, K.E.2    Humphrey, T.J.3    Cogan, T.A.4
  • 40
    • 1542616355 scopus 로고    scopus 로고
    • MreB, the cell shape-determining bacterial actin homologue, co-ordinates cell wall morphogenesis in Caulobacter crescentus
    • DOI 10.1111/j.1365-2958.2003.03936.x
    • MreB, the cell shape-determining bacterial actin homologue, co-ordinates cell wall morphogenesis in Caulobacter crescentus. Figge RM, Divakaruni AV, Gober JW, Mol Microbiol 2004 51 1321 1332 (Pubitemid 38338895)
    • (2004) Molecular Microbiology , vol.51 , Issue.5 , pp. 1321-1332
    • Figge, R.M.1    Divakaruni, A.V.2    Gober, J.W.3
  • 41
    • 0034780493 scopus 로고    scopus 로고
    • Periplasmic stress and ECF sigma factors
    • DOI 10.1146/annurev.micro.55.1.591
    • Periplasmic stress and ECF sigma factors. Raivio TL, Silhavy TJ, Annu Rev Microbiol 2001 55 591 624 (Pubitemid 32978117)
    • (2001) Annual Review of Microbiology , vol.55 , pp. 591-624
    • Raivio, T.L.1    Silhavy, T.J.2
  • 42
    • 0035985580 scopus 로고    scopus 로고
    • The extracytoplasmic function (ECF) sigma factors
    • The extracytoplasmic function (ECF) sigma factors. Helmann JD, Adv Microb Physiol 2002 46 47 110
    • (2002) Adv Microb Physiol , vol.46 , pp. 47-110
    • Helmann, J.D.1
  • 45
    • 0031830170 scopus 로고    scopus 로고
    • Biochemical and genetic characterization of a gentisate 1,2-dioxygenase from Sphingomonas sp. strain RW5
    • Biochemical and genetic characterization of a gentisate 1,2-dioxygenase from Sphingomonas sp. strain RW5. Werwath J, Arfmann HA, Pieper DH, Timmis KN, Wittich RM, J Bacteriol 1998 180 4171 4176 (Pubitemid 28373522)
    • (1998) Journal of Bacteriology , vol.180 , Issue.16 , pp. 4171-4176
    • Werwath, J.1    Arfmann, H.-A.2    Pieper, D.H.3    Timmis, K.N.4    Wittich, R.-M.5
  • 46
    • 0027048626 scopus 로고
    • Genetics and biogenesis of bacterial flagella
    • Genetics and biogenesis of bacterial flagella. Macnab RM, Annu Rev Genet 1992 26 131 158
    • (1992) Annu Rev Genet , vol.26 , pp. 131-158
    • MacNab, R.M.1
  • 49
    • 0022570069 scopus 로고
    • Influence of salt concentration on membrane lipids of halophilic bacteria
    • Influence of salt concentration on the membrane lipids of halophilic bacteria. Kates M, FEMS Microbiol Rev 1986 39 95 101 (Pubitemid 16091818)
    • (1986) FEMS Microbiology Reviews , vol.39 , Issue.1-2 , pp. 95-101
    • Kates, M.1
  • 50
    • 19944362187 scopus 로고    scopus 로고
    • Changes in fatty acid composition of Chromohalobacter israelensis with varying salt concentrations
    • DOI 10.1007/s00284-004-4396-2
    • Changes in fatty acid composition of Chromohalobacter israelensis with varying salt concentrations. Mutnuri S, Vasudevan N, Kastner M, Heipieper HJ, Curr Microbiol 2005 50 151 154 (Pubitemid 40754822)
    • (2005) Current Microbiology , vol.50 , Issue.3 , pp. 151-154
    • Mutnuri, S.1    Vasudevan, N.2    Kastner, M.3    Heipieper, H.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.