메뉴 건너뛰기




Volumn 308, Issue 2-3, 2011, Pages 357-361

Identification of phosphorylated human peptides by accurate mass measurement alone

Author keywords

Exact mass; Fourier transform mass spectrometry; FTMS; Human proteome; ICR; Ion cyclotron resonance

Indexed keywords


EID: 80955142790     PISSN: 13873806     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijms.2011.08.006     Document Type: Article
Times cited : (6)

References (42)
  • 1
    • 52049110575 scopus 로고    scopus 로고
    • Advances in the analysis of protein phosphorylation
    • A. Paradela, and J.P. Albar Advances in the analysis of protein phosphorylation J. Proteome Res. 7 2008 1809 1819
    • (2008) J. Proteome Res. , vol.7 , pp. 1809-1819
    • Paradela, A.1    Albar, J.P.2
  • 2
    • 0031457622 scopus 로고    scopus 로고
    • Signaling through scaffold, anchoring, and adaptor proteins
    • DOI 10.1126/science.278.5346.2075
    • T. Pawson, and J.D. Scott Signaling through scaffold, anchoring, and adaptor proteins Science 278 1997 2075 2080 (Pubitemid 28028310)
    • (1997) Science , vol.278 , Issue.5346 , pp. 2075-2080
    • Pawson, T.1    Scott, J.D.2
  • 3
    • 0026336662 scopus 로고
    • Protein kinase classification
    • T. Hunter Protein kinase classification Methods Enzymol. 200 1991 3 37
    • (1991) Methods Enzymol. , vol.200 , pp. 3-37
    • Hunter, T.1
  • 4
    • 33746730389 scopus 로고    scopus 로고
    • Phosphoproteomic approaches to elucidate cellular signaling networks
    • DOI 10.1016/j.copbio.2006.06.004, PII S0958166906000887
    • K. Schmelzle, and F.M. White Phosphoproteomic approaches to elucidate cellular signaling networks Curr. Opin. Chem. Biol. 17 2006 406 414 (Pubitemid 44163453)
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.4 , pp. 406-414
    • Schmelzle, K.1    White, F.M.2
  • 5
    • 0035241690 scopus 로고    scopus 로고
    • Mass spectrometry in proteomics
    • DOI 10.1021/cr990076h
    • R. Aebersold, and D.R. Goodlett Mass spectrometry in proteomics Chem. Rev. 101 2001 269 295 (Pubitemid 32325797)
    • (2001) Chemical Reviews , vol.101 , Issue.2 , pp. 269-295
    • Aebersold, R.1    Goodlett, D.R.2
  • 6
    • 0037338365 scopus 로고    scopus 로고
    • Proteomic analysis of post-translational modifications
    • DOI 10.1038/nbt0303-255
    • M. Mann, and O.N. Jensen Proteomic analysis of post-translational modifications Nat. Biotechnol. 21 2003 255 261 (Pubitemid 36314808)
    • (2003) Nature Biotechnology , vol.21 , Issue.3 , pp. 255-261
    • Mann, M.1    Jensen, O.N.2
  • 7
    • 0028330012 scopus 로고
    • Matrix-assisted laser desorption mass spectrometric peptide mapping of proteins separated by two-dimensional gel electrophoresis: Determination of phosphorylation in synapsin I
    • W.Z. Zhang, A.J. Czernik, T. Yungwirth, R. Aebersold, and B.T. Chait Matrix-assisted laser-desorption mass-spectrometric peptide-mapping of proteins separated by 2-dimensional gel-electrophoresis-determination of phosphorylation in synapsin Protein Sci. 3 1994 677 686 (Pubitemid 24136372)
    • (1994) Protein Science , vol.3 , Issue.4 , pp. 677-686
    • Zhang, W.1    Czernik, A.J.2    Yungwirth, T.3    Aebersold, R.4    Chait, B.T.5
  • 9
    • 0030218817 scopus 로고    scopus 로고
    • Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry
    • DOI 10.1006/abio.1996.0313
    • S.A. Carr, M.J. Huddleston, and R.S. Annan Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry Anal. Biochem. 239 1996 180 192 (Pubitemid 26268800)
    • (1996) Analytical Biochemistry , vol.239 , Issue.2 , pp. 180-192
    • Carr, S.A.1    Huddleston, M.J.2    Annan, R.S.3
  • 10
    • 0026197296 scopus 로고
    • Structure characterization of protein tryptic peptides via liquid chromatography/mass spectrometry and collision-induced dissociation of their doubly charged molecular ions
    • T.R. Covey, E.C. Huang, and J.D. Henion Structure characterization of protein tryptic peptides via liquid chromatography/mass spectrometry and collision-induced dissociation of their doubly charged molecular ions Anal. Chem. 63 1991 1193 1200
    • (1991) Anal. Chem. , vol.63 , pp. 1193-1200
    • Covey, T.R.1    Huang, E.C.2    Henion, J.D.3
  • 11
    • 0000279508 scopus 로고
    • Selective detection of phosphopeptides in complex mixtures by electrospray liquid chromatography/mass spectrometry
    • M.J. Huddleston, R.S. Annan, M.F. Bean, and S.A. Carr Selective detection of phosphopeptides in complex mixtures by electrospray liquid chromatography/mass spectrometry J. Am. Soc. Mass Spectrom. 4 1993 710 717
    • (1993) J. Am. Soc. Mass Spectrom. , vol.4 , pp. 710-717
    • Huddleston, M.J.1    Annan, R.S.2    Bean, M.F.3    Carr, S.A.4
  • 12
    • 0032930639 scopus 로고    scopus 로고
    • Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: Potentials and limitations
    • DOI 10.1021/ac9804902
    • G. Neubauer, and M. Mann Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations Anal. Chem. 71 1999 235 242 (Pubitemid 29029531)
    • (1999) Analytical Chemistry , vol.71 , Issue.1 , pp. 235-242
    • Neubauer, G.1    Mann, M.2
  • 13
    • 0030033198 scopus 로고    scopus 로고
    • Parent ion scans of unseparated peptide mixtures
    • M. Wilm, G. Neubauer, and M. Mann Parent ion scans of unseparated peptide mixtures Anal. Chem. 68 1996 527 533
    • (1996) Anal. Chem. , vol.68 , pp. 527-533
    • Wilm, M.1    Neubauer, G.2    Mann, M.3
  • 14
    • 34548291476 scopus 로고    scopus 로고
    • Accurate mass measurements in proteomics
    • DOI 10.1021/cr068288j
    • T. Liu, M.E. Belov, N. Jaitly, W.J. Qian, and R.D. Smith Accurate mass measurements in proteomics Chem. Rev. 107 2007 3621 3653 (Pubitemid 47322746)
    • (2007) Chemical Reviews , vol.107 , Issue.8 , pp. 3621-3653
    • Liu, T.1    Belov, M.E.2    Jaitly, N.3    Qian, W.-J.4    Smith, R.D.5
  • 16
    • 36349015923 scopus 로고    scopus 로고
    • Identification of Single and Double Sites of Phosphorylation by ECD FT-ICR/MS in Peptides Related to the Phosphorylation Site Domain of the Myristoylated Alanine-Rich C Kinase Protein
    • DOI 10.1016/j.jasms.2007.09.010, PII S1044030507008082
    • K.A. Woodling, J.R. Eyler, Y.O. Tsybin, C.L. Nilsson, A.G. Marshall, A.S. Edison, I.M. Al-Naggar, and M.R. Bubb Identification of single and double sites of phosphorylation by ECD FT-ICR/MS in peptides related to the phosphorylation site domain of the myristoylated alanine-rich C kinase protein J. Am. Soc. Mass Spectrom. 18 2007 2137 2145 (Pubitemid 350161330)
    • (2007) Journal of the American Society for Mass Spectrometry , vol.18 , Issue.12 , pp. 2137-2145
    • Woodling, K.A.1    Eyler, J.R.2    Tsybin, Y.O.3    Nilsson, C.L.4    Marshall, A.G.5    Edison, A.S.6    Al-Naggar, I.M.7    Bubb, M.R.8
  • 19
    • 0016717761 scopus 로고
    • Metal chelate affinity chromatography, a new approach to protein fractionation
    • J. Porath, J. Carlsson, I. Olsson, and G. Belfrage Metal chelate affinity chromatography, a new approach to protein fractionation Nature 258 1975 598 599
    • (1975) Nature , vol.258 , pp. 598-599
    • Porath, J.1    Carlsson, J.2    Olsson, I.3    Belfrage, G.4
  • 20
    • 30744439090 scopus 로고    scopus 로고
    • Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS
    • DOI 10.1021/pr0503073
    • K. Moser, and F.M. White Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS J. Proteome Res. 5 2006 98 104 (Pubitemid 43100800)
    • (2006) Journal of Proteome Research , vol.5 , Issue.1 , pp. 98-104
    • Moser, K.1    White, F.M.2
  • 22
    • 33745209192 scopus 로고    scopus 로고
    • Phosphopeptides enrichment using on line two-dimensional strong cation exchange followed by reversed phase liquid chromatography/mass spectrometry
    • K.B. Lim, and D.B. Kassel Phosphopeptides enrichment using on line two-dimensional strong cation exchange followed by reversed phase liquid chromatography/mass spectrometry Anal. Biochem. 354 2006 213 219
    • (2006) Anal. Biochem. , vol.354 , pp. 213-219
    • Lim, K.B.1    Kassel, D.B.2
  • 23
    • 33645217942 scopus 로고    scopus 로고
    • Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis
    • H.K. Kweon, and K. Hakansson Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis Anal. Chem. 78 2006 1743 1749
    • (2006) Anal. Chem. , vol.78 , pp. 1743-1749
    • Kweon, H.K.1    Hakansson, K.2
  • 24
    • 0035067251 scopus 로고    scopus 로고
    • Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
    • DOI 10.1038/86783
    • Y. Oda, T. Nagasu, and B.T. Chait Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome Nat. Biotechnol. 19 2001 379 382 (Pubitemid 32275350)
    • (2001) Nature Biotechnology , vol.19 , Issue.4 , pp. 379-382
    • Oda, Y.1    Nagasu, T.2    Chait, B.T.3
  • 25
    • 3242688830 scopus 로고    scopus 로고
    • Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns
    • DOI 10.1021/ac0498617
    • M.W. Pinkse, P.M. Uitto, M.J. Hilhorst, B. Ooms, and A.J. Heck Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns Anal. Chem. 76 2004 3935 3943 (Pubitemid 38943662)
    • (2004) Analytical Chemistry , vol.76 , Issue.14 , pp. 3935-3943
    • Pinkse, M.W.H.1    Uitto, P.M.2    Hilhorst, M.J.3    Ooms, B.4    Heck, A.J.R.5
  • 26
    • 36749031608 scopus 로고    scopus 로고
    • Highly efficient phosphopeptide enrichment by calcium phosphate precipitation combined with subsequent IMAC enrichment
    • DOI 10.1074/mcp.M700278-MCP200
    • X.M. Zhang, J.Y. Ye, O.N. Jensen, and P. Roepstorff Highly efficient phosphopeptide enrichment by calcium phosphate precipitation combined with subsequent IMAC enrichment Mol. Cell. Proteomics 6 2007 2032 2042 (Pubitemid 350201876)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.11 , pp. 2032-2042
    • Zhang, X.1    Ye, J.2    Jensen, O.N.3    Roepstorff, P.4
  • 27
    • 70349767010 scopus 로고    scopus 로고
    • Shifting unoccupied spectral space in mass spectrum of peptide fragment ions
    • B. Bajrami, Y. Shi, P. Lapierre, and X.D. Yao Shifting unoccupied spectral space in mass spectrum of peptide fragment ions J. Am. Soc. Mass Spectrom. 20 2009 2124 2134
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , pp. 2124-2134
    • Bajrami, B.1    Shi, Y.2    Lapierre, P.3    Yao, X.D.4
  • 30
    • 0036374351 scopus 로고    scopus 로고
    • Use of matrix clusters and trypsin autolysis fragments as mass calibrants in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • DOI 10.1002/rcm.775
    • W.A. Harris, D.J. Janecki, and J.P. Reilly Use of matrix clusters and trypsin autolysis fragments as mass calibrants in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Rapid Commum. Mass Spectrom. 16 2002 1714 1722 (Pubitemid 35033728)
    • (2002) Rapid Communications in Mass Spectrometry , vol.16 , Issue.18 , pp. 1714-1722
    • Harris, W.A.1    Janecki, D.J.2    Reilly, J.P.3
  • 31
    • 33646751578 scopus 로고    scopus 로고
    • Mass defect labeling of cysteine for improving peptide assignment in shotgun proteomic analyses
    • H. Hernandez, S. Niehauser, S.A. Boltz, V. Gawandi, R.S. Phillips, and I.J. Amster Mass defect labeling of cysteine for improving peptide assignment in shotgun proteomic analyses Anal. Chem. 78 2006 3417 3423
    • (2006) Anal. Chem. , vol.78 , pp. 3417-3423
    • Hernandez, H.1    Niehauser, S.2    Boltz, S.A.3    Gawandi, V.4    Phillips, R.S.5    Amster, I.J.6
  • 32
    • 54749085464 scopus 로고    scopus 로고
    • Cyclophosphoramidate ion as mass defect marker for efficient detection of protein serine phosphorylation
    • Y. Shi, B. Bajrami, M. Morton, and X.D. Yao Cyclophosphoramidate ion as mass defect marker for efficient detection of protein serine phosphorylation Anal. Chem. 80 2008 7614 7623
    • (2008) Anal. Chem. , vol.80 , pp. 7614-7623
    • Shi, Y.1    Bajrami, B.2    Morton, M.3    Yao, X.D.4
  • 33
    • 0034909215 scopus 로고    scopus 로고
    • Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning
    • DOI 10.1002/jms.174
    • H. Steen, B. Kuster, and M. Mann Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precurson ion scanning J. Mass Spectrom. 36 2001 782 790 (Pubitemid 32737420)
    • (2001) Journal of Mass Spectrometry , vol.36 , Issue.7 , pp. 782-790
    • Steen, H.1    Kuster, B.2    Mann, M.3
  • 35
    • 26544479794 scopus 로고
    • The 1995 update to the atomic mass evaluation
    • G. Audi, and A.H. Wapstra The 1995 update to the atomic mass evaluation Nucl. Phys. A 595 1995 409 425
    • (1995) Nucl. Phys. A , vol.595 , pp. 409-425
    • Audi, G.1    Wapstra, A.H.2
  • 36
    • 1242284991 scopus 로고    scopus 로고
    • Theoretical and Experimental Prospects for Protein Identification Based Solely on Accurate Mass Measurement
    • DOI 10.1021/pr034058z
    • F. He, M.R. Emmett, K. Hkansson, C.L. Hendrickson, and A.G. Marshall Theoretical and experimental prospects for protein identification based solely on accurate mass measurement J. Proteome Res. 3 2004 61 67 (Pubitemid 38233451)
    • (2004) Journal of Proteome Research , vol.3 , Issue.1 , pp. 61-67
    • He, F.1    Emmett, M.R.2    Hakansson, K.3    Hendrickson, C.L.4    Marshall, A.G.5
  • 38
    • 0034661893 scopus 로고    scopus 로고
    • Utility of accurate mass tags for proteome-wide protein identification
    • DOI 10.1021/ac0002386
    • T.P. Conrads, G.A. Anderson, T.D. Veenstra, L. Pasa-Tolic, and R.D. Smith Utility of accurate mass tags for proteome-wide protein identification Anal. Chem. 72 2000 3349 3354 (Pubitemid 30482514)
    • (2000) Analytical Chemistry , vol.72 , Issue.14 , pp. 3349-3354
    • Conrads, T.P.1    Anderson, G.A.2    Veenstra, T.D.3    Pasa-Tolic, L.4    Smith, R.D.5
  • 39
    • 56949103923 scopus 로고    scopus 로고
    • Mass-based classification (MBC) of peptides: Highly accurate precursor ion mass values can be used to directly recognize peptide phosphorylation
    • H.A. B Spengler Mass-based classification (MBC) of peptides: highly accurate precursor ion mass values can be used to directly recognize peptide phosphorylation J. Am. Soc. Mass Spectrom. 19 2008 1808 1812
    • (2008) J. Am. Soc. Mass Spectrom. , vol.19 , pp. 1808-1812
    • Spengler, H.A.B.1
  • 41
    • 78049516195 scopus 로고    scopus 로고
    • Automated broadband phase correction of Fourier transform ion cyclotron resonance mass spectra
    • F. Xian, C.L. Hendrickson, G.T. Blakney, S.C. Beu, and A.G. Marshall Automated broadband phase correction of Fourier transform ion cyclotron resonance mass spectra Anal. Chem. 82 2011 8807 8812
    • (2011) Anal. Chem. , vol.82 , pp. 8807-8812
    • Xian, F.1    Hendrickson, C.L.2    Blakney, G.T.3    Beu, S.C.4    Marshall, A.G.5
  • 42
    • 44949150382 scopus 로고    scopus 로고
    • High-performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 Tesla
    • DOI 10.1021/ac800386h
    • T.M. Schaub, C.L. Hendrickson, S. Horning, J.P. Quinn, M.W. Senko, and A.G. Marshall High performance mass spectrometry: Fourier transform ion cyclotron resonance at 14.5 Tesla Anal. Chem. 80 2008 3985 3990 (Pubitemid 351812746)
    • (2008) Analytical Chemistry , vol.80 , Issue.11 , pp. 3985-3990
    • Schaub, T.M.1    Hendrickson, C.L.2    Horning, S.3    Quinn, J.P.4    Senko, M.W.5    Marshall, A.G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.