Linking flickering to waves and whole-cell oscillations in a mitochondrial network model

Biophysical Journal

Volumn 101, Issue 9, 2011, Pages 2102-2111

  Nivala, Melissa ^a   Korge, Paavo ^a   Nivala, Michael ^a   Weiss, James N ^a,b   Qu, Zhilin ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANION; ION CHANNEL; REACTIVE OXYGEN METABOLITE; SUPEROXIDE DISMUTASE;

ARTICLE; BIOLOGICAL MODEL; METABOLISM; MITOCHONDRIAL MEMBRANE; MITOCHONDRIAL MEMBRANE POTENTIAL; MITOCHONDRION; PERIODICITY; PHYSIOLOGY; TIME;

ANIONS; ION CHANNELS; MEMBRANE POTENTIAL, MITOCHONDRIAL; MITOCHONDRIA; MITOCHONDRIAL MEMBRANES; MODELS, BIOLOGICAL; PERIODICITY; REACTIVE OXYGEN SPECIES; SUPEROXIDE DISMUTASE; TIME FACTORS;

COLAPTES;

EID: 80455164851     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2011.09.038     Document Type: Article

References (49)

1. D.C. Chan Mitochondria: dynamic organelles in disease, aging, and development Cell 125 2006 1241 1252 (Pubitemid 43929096)
2. J.N. Weiss, L. Yang, and Z. Qu Systems biology approaches to metabolic and cardiovascular disorders: network perspectives of cardiovascular metabolism J. Lipid Res. 47 2006 2355 2366 (Pubitemid 44936097)
3. D.B. Zorov, and C.R. Filburn S.J. Sollott Reactive oxygen species (ROS)-induced ROS release: a new phenomenon accompanying induction of the mitochondrial permeability transition in cardiac myocytes J. Exp. Med. 192 2000 1001 1014
4. N.R. Brady, and S.P. Elmore H.V. Westerhoff Coordinated behavior of mitochondria in both space and time: a reactive oxygen species-activated wave of mitochondrial depolarization Biophys. J. 87 2004 2022 2034 (Pubitemid 39167056)
5. M.A. Aon, and S. Cortassa B. O'Rourke Synchronized whole cell oscillations in mitochondrial metabolism triggered by a local release of reactive oxygen species in cardiac myocytes J. Biol. Chem. 278 2003 44735 44744 (Pubitemid 37377231)
6. M.A. Aon, S. Cortassa, and B. O'Rourke Percolation and criticality in a mitochondrial network Proc. Natl. Acad. Sci. USA 101 2004 4447 4452 (Pubitemid 38437431)
7. H.M. Honda, P. Korge, and J.N. Weiss Mitochondria and ischemia/reperfusion injury Ann. N. Y. Acad. Sci. 1047 2005 248 258 (Pubitemid 41123844)
8. F.T. Kurz, and M.A. Aon A.A. Armoundas Spatio-temporal oscillations of individual mitochondria in cardiac myocytes reveal modulation of synchronized mitochondrial clusters Proc. Natl. Acad. Sci. USA 107 2010 14315 14320
9. S. Cortassa, and M.A. Aon B. O'Rourke A mitochondrial oscillator dependent on reactive oxygen species Biophys. J. 87 2004 2060 2073 (Pubitemid 39167059)
10. T.J. Collins, and M.J. Berridge M.D. Bootman Mitochondria are morphologically and functionally heterogeneous within cells EMBO J. 21 2002 1616 1627 (Pubitemid 34614618)
11. C.M. O'Reilly, and K.E. Fogarty J.V. Walsh Jr. Quantitative analysis of spontaneous mitochondrial depolarizations Biophys. J. 85 2003 3350 3357 (Pubitemid 37345823)
12. M.R. Duchen, A. Leyssens, and M. Crompton Transient mitochondrial depolarizations reflect focal sarcoplasmic reticular calcium release in single rat cardiomyocytes J. Cell Biol. 142 1998 975 988 (Pubitemid 28402053)
13. J.F. Buckman, and I.J. Reynolds Spontaneous changes in mitochondrial membrane potential in cultured neurons J. Neurosci. 21 2001 5054 5065 (Pubitemid 32622931)
14. F. De Giorgi, L. Lartigue, and F. Ichas Electrical coupling and plasticity of the mitochondrial network Cell Calcium 28 2000 365 370 (Pubitemid 32049119)
15. J. Hüser, C.E. Rechenmacher, and L.A. Blatter Imaging the permeability pore transition in single mitochondria Biophys. J. 74 1998 2129 2137 (Pubitemid 28157948)
16. J. Hüser, and L.A. Blatter Fluctuations in mitochondrial membrane potential caused by repetitive gating of the permeability transition pore Biochem. J. 343 1999 311 317 (Pubitemid 29511762)
17. D.B. Zorov, M. Juhaszova, and S.J. Sollott Mitochondrial ROS-induced ROS release: an update and review Biochim. Biophys. Acta 1757 2006 509 517
18. D.D. Kindler, and C. Thiffault J.P. Bennett Jr. Neurotoxic nitric oxide rapidly depolarizes and permeabilizes mitochondria by dynamically opening the mitochondrial transition pore Mol. Cell. Neurosci. 23 2003 559 573 (Pubitemid 36970218)
19. +2 exchange are reduced in Alzheimer's disease cybrids Mitochondrion. 5 2005 109 119 (Pubitemid 40485770)
20. L. Zhou, and M.A. Aon B. O'Rourke A reaction-diffusion model of ROS-induced ROS release in a mitochondrial network PLOS Comput. Biol. 6 2010 e1000657
21. L. Yang, and P. Korge Z. Qu Mitochondrial oscillations and waves in cardiac myocytes: insights from computational models Biophys. J. 98 2010 1428 1438
22. M.A. Aon, and S. Cortassa B. O'Rourke Mitochondrial criticality: a new concept at the turning point of life or death Biochim. Biophys. Acta 1762 2006 232 240 (Pubitemid 43006029)
23. P. Bak, C. Tang, and K. Wiesenfeld Self-organized criticality: an explanation of the 1/f noise Phys. Rev. Lett. 59 1987 381 384
24. D.L. Turcotte Self-organized criticality Rep. Prog. Phys. 62 1999 1377 1429
25. M. Aschwanden Self-Organized Criticality in Astrophysics: Statistics of Nonlinear Processes in the Universe 2011 Springer-Verlag New York
26. V.A. Selivanov, and T.V. Votyakova M. Cascante Bistability of mitochondrial respiration underlies paradoxical reactive oxygen species generation induced by anoxia PLOS Comput. Biol. 5 2009 e1000619
27. D.T. Gillespie Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 1977 2340 2361
28. J. Borecký, P. Jezek, and D. Siemen 108-pS channel in brown fat mitochondria might be identical to the inner membrane anion channel J. Biol. Chem. 272 1997 19282 19289 (Pubitemid 27337720)
29. H.E. Stanley Scaling, universality, and renormalization: three pillars of modern critical phenomena Rev. Mod. Phys. 71 1999 S358 S366
30. 2+ clock in cardiac pacemaker cells Biophys. J. 100 2011 271 283
31. F. Ichas, L.S. Jouaville, and J.P. Mazat Mitochondria are excitable organelles capable of generating and conveying electrical and calcium signals Cell 89 1997 1145 1153 (Pubitemid 127678747)
32. W. Wang, and H. Fang H. Cheng Superoxide flashes in single mitochondria Cell 134 2008 279 290 (Pubitemid 352010332)
33. S. Pouvreau Superoxide flashes in mouse skeletal muscle are produced by discrete arrays of active mitochondria operating coherently PLoS ONE 5 2010 e13035
34. E. Karsenti Self-organization in cell biology: a brief history Nat. Rev. Mol. Cell Biol. 9 2008 255 262 (Pubitemid 351301833)
35. S. Camazine, and J.-L. Deneuboug E. Bonabeau Self-Organization in Biological Systems 2001 Princeton University Press Princeton, NJ
36. D. Stauffer, and A. Aharony Introduction to Percolation Theory 1994 Taylor & Francis Philadelphia
37. i waves in cardiac myocytes Am. J. Physiol. 270 1996 C148 C159
38. H. Cheng, and W.J. Lederer Calcium sparks Physiol. Rev. 88 2008 1491 1545
39. 2+ oscillations EMBO J. 20 2001 65 76 (Pubitemid 32099103)
40. M. Nivala, and C. Ko Z. Qu Self-organization of pacemaking sites for calcium waves and oscillations in cardiac myocytes Biophys. J. 100 2011 557a
41. 2+ dynamics Biophys. J. 84 2003 42 56 (Pubitemid 36026379)
42. 2+ oscillate: by chance or by the clock? Biophys. J. 94 2008 2404 2411
43. 2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control Proc. Natl. Acad. Sci. USA 108 2011 427 432
44. A. Skupin, H. Kettenmann, and M. Falcke Calcium signals driven by single channel noise PLOS Comput. Biol. 6 2010 e100870
45. L. Zhou, and J.E. Salem M.E. Cabrera Mechanistic model of cardiac energy metabolism predicts localization of glycolysis to cytosolic subdomain during ischemia Am. J. Physiol. Heart Circ. Physiol. 288 2005 H2400 H2411
46. F. Wu, and F. Yang D.A. Beard Computer modeling of mitochondrial tricarboxylic acid cycle, oxidative phosphorylation, metabolite transport, and electrophysiology J. Biol. Chem. 282 2007 24525 24537 (Pubitemid 47347524)
47. S. Cortassa, and M.A. Aon B. O'Rourke An integrated model of cardiac mitochondrial energy metabolism and calcium dynamics Biophys. J. 84 2003 2734 2755 (Pubitemid 36373594)
48. O.V. Demin, B.N. Kholodenko, and V.P. Skulachev A model of O2.-generation in the complex III of the electron transport chain Mol. Cell. Biochem. 184 1998 21 33 (Pubitemid 28398598)
49. J.P. Keener, and J. Sneyd Mathematical Physiology 1998 Springer New York