Line-1 methylation levels in leukocyte DNA and risk of renal cell cancer

PLoS ONE

Volumn 6, Issue 11, 2011, Pages

  Liao, Linda M ^a   Brennan, Paul ^b   van Bemmel, Dana M ^a   Zaridze, David ^c   Matveev, Vsevolod ^c   Janout, Vladimir ^d   Kollarova, Hellena ^d   Bencko, Vladimir ^e   Navratilova, Marie ^f   Szeszenia Dabrowska, Neonila ^g   Mates, Dana ^h   Rothman, Nathaniel ^a   Boffetta, Paolo ^i,j   Chow, Wong Ho ^a   Moore, Lee E ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b INTERNATIONAL AGENCY FOR RESEARCH ON CANCER   (France)

^c Institute of Carcinogenesis   (Russian Federation)

^d PALACKÝ UNIVERSITY   (Czech Republic)

^e CHARLES UNIVERSITY   (Czech Republic)

^f MASARYK MEMORIAL CANCER INSTITUTE   (Czech Republic)

^g NOFER INSTITUTE OF OCCUPATIONAL MEDICINE   (Poland)

^h NATIONAL INSTITUTE OF PUBLIC HEALTH   (Romania)

ⁱ MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^j INTERNATIONAL PREVENTION RESEARCH INSTITUTE   (France)

more..

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; CELL DNA; GENOMIC DNA; DNA; TUMOR MARKER;

ADULT; AGED; ARTICLE; CANCER RISK; CONTROLLED STUDY; CPG ISLAND; CZECH REPUBLIC; DNA ISOLATION; DNA METHYLATION; FEMALE; GENETIC ASSOCIATION; GENETIC RISK; HUMAN; KIDNEY CARCINOMA; LEUKOCYTE; LONG INTERSPERSED REPEAT; MALE; POLAND; PYROSEQUENCING; RISK ASSESSMENT; ROMANIA; RUSSIAN FEDERATION; SMOKING HABIT; BLOOD; CASE CONTROL STUDY; COMPARATIVE STUDY; EASTERN EUROPE; GENETICS; KIDNEY TUMOR; METABOLISM; MIDDLE AGED; PATHOLOGY; RISK FACTOR;

ADULT; AGED; CARCINOMA, RENAL CELL; CASE-CONTROL STUDIES; DNA; DNA METHYLATION; EUROPE, EASTERN; FEMALE; HUMANS; KIDNEY NEOPLASMS; LEUKOCYTES; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MALE; MIDDLE AGED; RISK FACTORS; TUMOR MARKERS, BIOLOGICAL; YOUNG ADULT;

EID: 80455145228     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0027361     Document Type: Article

References (47)

1. Ehrlich M, (2006) Cancer-linked DNA hypomethylation and its relationship to hypermethylation. Curr Top Microbiol Immunol 310: 251-274.
2. Jones PA, Baylin SB, (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3: 415-428.
3. Ehrlich M, (2002) DNA methylation in cancer: too much, but also too little. Oncogene 21: 5400-5413.
4. Moore LE, Pfeiffer RM, Poscablo C, Real FX, Kogevinas M, et al. (2008) Genomic DNA hypomethylation as a biomarker for bladder cancer susceptibility in the Spanish Bladder Cancer Study: a case-control study. Lancet Oncol 9: 359-366.
5. Choi JY, James SR, Link PA, McCann SE, Hong CC, et al. (2009) Association between global DNA hypomethylation in leukocytes and risk of breast cancer. Carcinogenesis 30: 1889-1897.
6. Lim U, Flood A, Choi SW, Albanes D, Cross AJ, et al. (2008) Genomic methylation of leukocyte DNA in relation to colorectal adenoma among asymptomatic women. Gastroenterology 134: 47-55.
7. Pufulete M, Al-Ghnaniem R, Leather AJ, Appleby P, Gout S, et al. (2003) Folate status, genomic DNA hypomethylation, and risk of colorectal adenoma and cancer: a case control study. Gastroenterology 124: 1240-1248.
8. Cordaux R, Batzer MA, (2009) The impact of retrotransposons on human genome evolution. Nat Rev Genet 10: 691-703.
9. Chalitchagorn K, Shuangshoti S, Hourpai N, Kongruttanachok N, Tangkijvanich P, et al. (2004) Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis. Oncogene 23: 8841-8846.
10. Weisenberger DJ, Campan M, Long TI, Kim M, Woods C, et al. (2005) Analysis of repetitive element DNA methylation by MethyLight. Nucleic Acids Res 33: 6823-6836.
11. Yang AS, Estecio MR, Doshi K, Kondo Y, Tajara EH, et al. (2004) A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements. Nucleic Acids Res 32: e38.
12. Poage GM, Houseman EA, Christensen BC, Butler R, Avissar-Whiting M, et al. (2011) Global Hypomethylation Identifies Loci Targeted for Hypermethylation in Head and Neck Cancer. Clin Cancer Res.
13. Hou L, Wang H, Sartori S, Gawron A, Lissowska J, et al. (2010) Blood leukocyte DNA hypomethylation and gastric cancer risk in a high-risk Polish population. Int J Cancer.
14. Mirabello L, Savage SA, Korde L, Gadalla SM, Greene MH, (2010) LINE-1 methylation is inherited in familial testicular cancer kindreds. BMC Med Genet 11: 77.
15. Wilhelm CS, Kelsey KT, Butler R, Plaza S, Gagne L, et al. (2010) Implications of LINE1 methylation for bladder cancer risk in women. Clin Cancer Res 16: 1682-1689.
16. Hsiung DT, Marsit CJ, Houseman EA, Eddy K, Furniss CS, et al. (2007) Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma. Cancer Epidemiol Biomarkers Prev 16: 108-114.
17. Mathew A, Devesa SS, Fraumeni JF Jr, Chow WH, (2002) Global increases in kidney cancer incidence, 1973-1992. Eur J Cancer Prev 11: 171-178.
18. Levi F, Ferlay J, Galeone C, Lucchini F, Negri E, et al. (2008) The changing pattern of kidney cancer incidence and mortality in Europe. BJU Int 101: 949-958.
19. Chow WH, Dong LM, Devesa SS, (2010) Epidemiology and risk factors for kidney cancer. Nat Rev Urol 7: 245-257.
20. Moore LE, Hung R, Karami S, Boffetta P, Berndt S, et al. (2008) Folate metabolism genes, vegetable intake and renal cancer risk in central Europe. Int J Cancer 122: 1710-1715.
21. Nickerson ML, Jaeger E, Shi Y, Durocher JA, Mahurkar S, et al. (2008) Improved identification of von Hippel-Lindau gene alterations in clear cell renal tumors. Clin Cancer Res 14: 4726-4734.
22. Wilson AS, Power BE, Molloy PL, (2007) DNA hypomethylation and human diseases. Biochim Biophys Acta 1775: 138-162.
23. Urakami S, Shiina H, Enokida H, Hirata H, Kawamoto K, et al. (2006) Wnt antagonist family genes as biomarkers for diagnosis, staging, and prognosis of renal cell carcinoma using tumor and serum DNA. Clin Cancer Res 12: 6989-6997.
24. Hoque MO, Begum S, Topaloglu O, Jeronimo C, Mambo E, et al. (2004) Quantitative detection of promoter hypermethylation of multiple genes in the tumor, urine, and serum DNA of patients with renal cancer. Cancer Res 64: 5511-5517.
25. Arai E, Ushijima S, Fujimoto H, Hosoda F, Shibata T, et al. (2009) Genome-wide DNA methylation profiles in both precancerous conditions and clear cell renal cell carcinomas are correlated with malignant potential and patient outcome. Carcinogenesis 30: 214-221.
26. Minardi D, Lucarini G, Filosa A, Milanese G, Zizzi A, et al. (2009) Prognostic role of global DNA-methylation and histone acetylation in pT1a clear cell renal carcinoma in partial nephrectomy specimens. J Cell Mol Med 13: 2115-2121.
27. Florl AR, Lower R, Schmitz-Drager BJ, Schulz WA, (1999) DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas. Br J Cancer 80: 1312-1321.
28. Phokaew C, Kowudtitham S, Subbalekha K, Shuangshoti S, Mutirangura A, (2008) LINE-1 methylation patterns of different loci in normal and cancerous cells. Nucleic Acids Res 36: 5704-5712.
29. Perrin D, Ballestar E, Fraga MF, Frappart L, Esteller M, et al. (2007) Specific hypermethylation of LINE-1 elements during abnormal overgrowth and differentiation of human placenta. Oncogene 26: 2518-2524.
30. El-Maarri O, Becker T, Junen J, Manzoor SS, Diaz-Lacava A, et al. (2007) Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males. Hum Genet 122: 505-514.
31. Rusiecki JA, Baccarelli A, Bollati V, Tarantini L, Moore LE, et al. (2008) Global DNA hypomethylation is associated with high serum-persistent organic pollutants in Greenlandic Inuit. Environ Health Perspect 116: 1547-1552.
32. Zhu ZZ, Hou L, Bollati V, Tarantini L, Marinelli B, et al. (2010) Predictors of global methylation levels in blood DNA of healthy subjects: a combined analysis. Int J Epidemiol.
33. Kim M, Long TI, Arakawa K, Wang R, Yu MC, et al. (2010) DNA methylation as a biomarker for cardiovascular disease risk. PLoS ONE 5: e9692.
34. Fraga MF, Agrelo R, Esteller M, (2007) Cross-talk between aging and cancer: the epigenetic language. Ann N Y Acad Sci 1100: 60-74.
35. Figueiredo JC, Grau MV, Wallace K, Levine AJ, Shen L, et al. (2009) Global DNA hypomethylation (LINE-1) in the normal colon and lifestyle characteristics and dietary and genetic factors. Cancer Epidemiol Biomarkers Prev 18: 1041-1049.
36. Jintaridth P, Mutirangura A, (2010) Distinctive patterns of age-dependent hypomethylation in interspersed repetitive sequences. Physiol Genomics 41: 194-200.
37. Furniss CS, Marsit CJ, Houseman EA, Eddy K, Kelsey KT, (2008) Line region hypomethylation is associated with lifestyle and differs by human papillomavirus status in head and neck squamous cell carcinomas. Cancer Epidemiol Biomarkers Prev 17: 966-971.
38. Brennan P, van der Hel O, Moore LE, Zaridze D, Matveev V, et al. (2008) Tobacco smoking, body mass index, hypertension, and kidney cancer risk in central and eastern Europe. Br J Cancer 99: 1912-1915.
39. Liu H, Zhou Y, Boggs SE, Belinsky SA, Liu J, (2007) Cigarette smoke induces demethylation of prometastatic oncogene synuclein-gamma in lung cancer cells by downregulation of DNMT3B. Oncogene 26: 5900-5910.
40. Moore LE, Brennan P, Karami S, Hung RJ, Hsu C, et al. (2007) Glutathione S-transferase polymorphisms, cruciferous vegetable intake and cancer risk in the Central and Eastern European Kidney Cancer Study. Carcinogenesis 28: 1960-1964.
41. Hsu CC, Chow WH, Boffetta P, Moore L, Zaridze D, et al. (2007) Dietary risk factors for kidney cancer in Eastern and Central Europe. Am J Epidemiol 166: 62-70.
42. Packer BR, Yeager M, Burdett L, Welch R, Beerman M, et al. (2006) SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes. Nucleic Acids Res 34: D617-621.
43. Liu T, Zhang X, So CK, Wang S, Wang P, et al. (2007) Regulation of Cdx2 expression by promoter methylation, and effects of Cdx2 transfection on morphology and gene expression of human esophageal epithelial cells. Carcinogenesis 28: 488-496.
44. Brakensiek K, Wingen LU, Langer F, Kreipe H, Lehmann U, (2007) Quantitative high-resolution CpG island mapping with Pyrosequencing reveals disease-specific methylation patterns of the CDKN2B gene in myelodysplastic syndrome and myeloid leukemia. Clin Chem 53: 17-23.
45. England R, Pettersson M, (2005) Pyro Q-CpG™: quantitative analysis of methylation in multiple CpG sites by Pyrosequencing. Nature Methods 2: 1-2.
46. Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, et al. (2009) L1 retrotransposition in human neural progenitor cells. Nature 460: 1127-1131.
47. Royo JL, Hidalgo M, Ruiz A, (2007) Pyrosequencing protocol using a universal biotinylated primer for mutation detection and SNP genotyping. Nat Protoc 2: 1734-1739.