Vibrio parahaemolyticus isolates from southeastern chinese coast are genetically diverse with circulation of clonal complex 3 strains since 2002

Foodborne Pathogens and Disease

Volumn 8, Issue 11, 2011, Pages 1169-1176

  Yu, Ying ^a   Hu, Weizhao ^a   Wu, Beibei ^b   Zhang, Peipei ^a   Chen, Jianshun ^a   Wang, Shuna ^a   Fang, Weihuan ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG PROVINCIAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHINA; ENVIRONMENTAL FACTOR; GENE IDENTIFICATION; GENE MUTATION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RECA GENE; SEA FOOD; SEQUENCE ANALYSIS; VIBRIO PARAHAEMOLYTICUS; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FOOD CONTROL; GENETICS; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; MULTILOCUS SEQUENCE TYPING; POPULATION GENETICS; SPECIES DIFFERENCE; VIBRIOSIS;

VIBRIO PARAHAEMOLYTICUS; VIBRIO SP.;

BACTERIAL DNA;

ALLELES; BACTERIAL TYPING TECHNIQUES; CHINA; DNA, BACTERIAL; ENVIRONMENTAL MICROBIOLOGY; FOOD MICROBIOLOGY; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; SEAFOOD; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VIBRIO INFECTIONS; VIBRIO PARAHAEMOLYTICUS;

EID: 80155174998     PISSN: 15353141     EISSN: 15567125     Source Type: Journal    
DOI: 10.1089/fpd.2011.0865     Document Type: Article

References (31)

1. Ansaruzzaman M, Chowdhury A, Bhuiyan NA, Sultana M, Safa A, Lucas M, von Seidlein L, Barreto A, Chaignat C-L, Sack DA, Clemens JD, Nair GB, Choi SY, Jeon YS, Lee JH, Lee HR, Chun J, and Kim DW. Characteristics of a pandemic clone of O3: K6 and O4: K68 Vibrio parahaemolyticus isolated in Beira, Mozambique. J Med Microbiol 2008;57:1502-1507.
2. Chao G, Jiao X, Zhou X, Yang Z, Huang J, Pan Z, Zhou L, and Qian X. Serodiversity, pandemic O3:K6 clone, molecular typing, and antibiotic susceptibility of foodborne and clinical Vibrio parahaemolyticus isolates in Jiangsu, China. Foodborne Pathog Dis 2009;6:1021-1028.
3. Chen Y, Zhang W, and Knabel SJ. Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States. J Clin Microbiol 2006;43:5291-5294. (Pubitemid 41484042)
4. Chiou CS, Hsu SY, Chiu SI, Wang TK, and Chao CS. Vibrio parahaemolyticus serovar O3:K6 as cause of unusually high incidence of food-borne disease outbreaks in Taiwan from 1996 to 1999. J Clin Microbiol 2000;38:4621-4625.
5. Chowdhury NR, Stine OC, Morris JG, and Nair GB. Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing. J Clin Microbiol 2004;42:1280-1282. (Pubitemid 38332866)
6. Colin SO, Sozhamannan S, Gou Q, Zheng SQ, Morris JG Jr., and Johnson JA. Phylogeny of Vibrio cholerae based on recA sequence. Infect Immun 2000;68:7180-7185. (Pubitemid 32463441)
7. DePaola A, Kaysner CA, Bowers J, and Cook DW. Environmental investigations of Vibrio parahaemolyticus in oyster after outbreaks in Washington, Texas, and New York (1997 and 1998). Appl Environ Microbiol 2000;66:4649-4654.
8. DePaola A, Ulaszek J, Kaysner CA, Tenge BJ, Nordstrom JL, Wells J, Puhr N, and Gendel SM. Molecular, serological, and virulence characteristics of Vibrio parahaemolyticus isolated from environmental, food, and clinical sources in North America and Asia. Appl Environ Microbiol 2003;69: 3999-4005. (Pubitemid 36870059)
9. Didelot X and Falush D. Inference of bacterial microevolution using multilocus sequence data. Genetics 2007;175:1251-1266. (Pubitemid 46798228)
10. Feil EJ, Li BC, Aanensen DM, Hanage WP, and Spratt BG. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 2004;186:1518-1530. (Pubitemid 38248742)
11. Foley SL, White DG, McDermott PF, Walker RD, Rhodes B, Fedorka-Cray PJ, Simjee S, and Zhao S. Comparison of sub-typing methods for differentiating Salmonella enterica serovar Typhimurium isolates obtained from food animal sources. J Clin Microbiol 2006;44:3569-3577. (Pubitemid 46768827)
12. Gonzalez-Escalona N, Martinez-Urtaza J, Romero J, Espejo RT, Jaykus LA, and DePaola A. Determination of molecular phy-logenetics of Vibrio parahaemolyticus strains by multilocus xsequence typing. J Bacteriol 2008;190:2831-2840. (Pubitemid 351508182)
13. González-Escalona N, Romero J, and Espejo T. Polymorphism and gene conversion of the 16S rRNA genes in the multiple rRNA operons of Vibrio parahaemolyticus. FEMS Microbiol Lett 2005;164:213-219. (Pubitemid 40724432)
14. Guttman DS and Dykhuizen DE. Clonal divergence in Escher-ichia coli as a result of recombination, not mutation. Science 1994;266:1380-1383.
15. Hazen TH, Wu DY, Eisen JA, and Sobecky PA. Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp. Appl Environ Microbiol 2007;73:7703-7710.
16. Kai MK, et al. Vibrio parahaemolyticus PulseNet PFGE protocol working group. Evaluation and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping Vibrio parahaemolyticus: an international multicenter collaborative study. J Clin Microbiol 2008,46:2766-2773.
17. Librado P and Rozas J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009;25: 1541-1542.
18. Liu X, Chen Y, Wang X, and Ji R. Foodborne disease outbreaks in China from 1992 to 2001 national foodborne disease surveillance system. Wei Sheng Yan Jiu 2004;33:725-727.
19. Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, Zhang Q, Zhou J, Zurth K, Caugant DA, Feavers IM, Achtman M, and Spratt BG. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998; 95:3140-3145. (Pubitemid 28135868)
20. Martin DP, Lemey P, Lott M, Moulton V, Posada D, and Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 2010;26:2462-2463.
21. Martinez-Urtaza J, Lozano-Leon A, DePaola A, Ishibashi M, Shimada K, Nishibuchi M, and Liebana E. Characterization of pathogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates. J Clin Microbiol 2004;42:4672-4678. (Pubitemid 39362388)
22. Martinez-Urtaza J, Simental L, Velasco D, DePaola A, Ishibashi M, Nakaguchi Y, Nishibuchi M, Carrera-Flores D, Rey-Alvarez C, and Pousa A. Pandemic vibrio parahaemolyticus 03:K6, Europe. Emerg Infect Dis 2005;11:1319-1320.
23. Nair GB, Ramamurthy T, Bhattacharya SK, Dutta B, Takeda Y, and Sack DA. Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants. Clin Microbiol Rev 2007;20:39-48. (Pubitemid 46167767)
24. Nallapareddy SR, Duh RW, Singh KV, and Murray BE. Molecular typing of selected Enterococcus faecalis isolates: pilot study using multilocus sequence typing and pulsed-field gel electrophoresis. J Clin Microbiol 2002;40:868-876. (Pubitemid 34208637)
25. Okuda J, Ishibashi M, Hayakawa E, Nishino T, Takeda Y, Mu-khopadhyay AK, Garg S, Bhattacharya SK, Nair GB, and Nishibuchi M. Emergence of a unique O3:K6 clone of Vibrio parahaemolyticus in Calcutta, India, and isolation of strains from the same clonal group from Southeast Asian travelers arriving in Japan. J Clin Microbiol 1997;35:3150-3155. (Pubitemid 27505736)
26. Pavlic M and Griffiths MW. Principles, applications, and limitations of automated ribotyping as a rapid method in food safety. Foodborne Pathog Dis 2009;6:1047-1055.
27. Stumpf MP and McVean GA. Estimating recombination rates from population-genetic data. Nature Rev Genet 2003;4: 959-968. (Pubitemid 37474643)
28. Tamura K, Dudley J, Nei M, and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007;24:1596-1599. (Pubitemid 47236692)
29. Vongxay K, Pan ZJ, Zhang XF, Wang SN, Cheng SY, Mei LL, Xu C, and Fang WH. Occurrence of pandemic clones of Vibrio parahaemolyticus isolates from seafood and clinical samples in a Chinese coastal province. Foodborne Pathog Dis 2008;5:127-134. (Pubitemid 351535857)
30. Vos M and Didelot X. A comparison of homologous recombination rates in bacteria and archaea. ISME J 2009;3:199-208.
31. Yan YF, Cui YJ, Han HH, Xiao X, Wong HC, Tan YF, Guo ZB, Liu XM, Yang RF, and Zhou DS. Extended MLST-based population genetics and phylogeny of Vibrio parahaemolyticus with high levels of recombination. Int J Food Micriobiol 2011; 145:106-112.