메뉴 건너뛰기




Volumn 47, Issue 3, 2011, Pages 268-274

Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discrimination of cyanobacteria Anabaena species

Author keywords

Anabaena; Cyanobacteria; DNA similarity; Genetic distance; Rpob gene

Indexed keywords

ANABAENA; CYANOBACTERIA; NOSTOCALES;

EID: 80055116923     PISSN: 04402413     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (29)
  • 1
    • 33846641262 scopus 로고    scopus 로고
    • Microbial community of cyanobacteria mats in the intertidal zone of oil-polluted coast of Saudi Arabia
    • Al-Thukair, A.A., R.M. Abed, and L. Mohamed. 2007. Microbial community of cyanobacteria mats in the intertidal zone of oil-polluted coast of Saudi Arabia. Mar. Pollut. Bull. 54, 173-179.
    • (2007) Mar. Pollut. Bull. , vol.54 , pp. 173-179
    • Al-Thukair, A.A.1    Abed, R.M.2    Mohamed, L.3
  • 2
    • 0000952381 scopus 로고
    • Studies on nitrogen-fixing blue-green algae I. Growth and nitrogen fixation by Anabaena cylindrical
    • Allen, M.B. and I.A Daniel. 1955. Studies on nitrogen-fixing blue-green algae I. Growth and nitrogen fixation by Anabaena cylindrical. Lemm. Plant Physiol. 30, 366-372.
    • (1955) Lemm. Plant Physiol. , vol.30 , pp. 366-372
    • Allen, M.B.1    Daniel, I.A.2
  • 4
    • 80055101971 scopus 로고    scopus 로고
    • Population dynamics and the toxin of Anabaena in the Lower Naktong River
    • Choi, A.R., J.H. Park, and J.A. Lee. 2002. Population dynamics and the toxin of Anabaena in the Lower Naktong River. Algae 17, 95-104.
    • (2002) Algae , vol.17 , pp. 95-104
    • Choi, A.R.1    Park, J.H.2    Lee, J.A.3
  • 5
    • 0033860832 scopus 로고    scopus 로고
    • rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • Dahllöf, I., H. Baillie, and S. Kjelleberg. 2000. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66, 3376-3380.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3376-3380
    • Dahllöf, I.1    Baillie, H.2    Kjelleberg, S.3
  • 6
    • 84986841647 scopus 로고
    • Properties of Microcystis aeruginosa and M. flos-aquae (Cyanophyta) in culture: taxonomic implications
    • Doers. M.P. and D.L. Parker. 1988. Properties of Microcystis aeruginosa and M. flos-aquae (Cyanophyta) in culture: taxonomic implications. J. Phycol. 24, 502-508.
    • (1988) J. Phycol. , vol.24 , pp. 502-508
    • Doers, M.P.1    Parker, D.L.2
  • 7
    • 0031734090 scopus 로고    scopus 로고
    • Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256
    • Fegatella, F., J. Lim, S. Kjelleberg, and R. Cavicchioli. 1998. Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256. Appl. Environ. Microbiol. 64, 4433-4438.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4433-4438
    • Fegatella, F.1    Lim, J.2    Kjelleberg, S.3    Cavicchioli, R.4
  • 8
    • 0033944639 scopus 로고    scopus 로고
    • Assessing potential health risks from microcystin toxins in blue-green algae dietary supplements
    • Gilroy, D.J., K.W. Kauffman, R.A. Hall, X. Huang, and F. S. Chu. 2000. Assessing potential health risks from microcystin toxins in blue-green algae dietary supplements. Environ. Health Perspect. 108, 435-439.
    • (2000) Environ. Health Perspect. , vol.108 , pp. 435-439
    • Gilroy, D.J.1    Kauffman, K.W.2    Hall, R.A.3    Huang, X.4    Chu, F.S.5
  • 11
    • 63149119819 scopus 로고    scopus 로고
    • Quantification of toxic Anabaena and evaluation of its dominance ratio in blooms using real-time PCR
    • Ha, J.H., T. Hidaka, and H. Tsunos. 2009. Quantification of toxic Anabaena and evaluation of its dominance ratio in blooms using real-time PCR. Environ. Sci. Technol. 43, 812-818.
    • (2009) Environ. Sci. Technol. , vol.43 , pp. 812-818
    • Ha, J.H.1    Hidaka, T.2    Tsunos, H.3
  • 12
    • 5644283065 scopus 로고    scopus 로고
    • 16S rDNA for diagnosing pathogens: a living tree
    • Harmsen, D. and H. Karch. 2004. 16S rDNA for diagnosing pathogens: a living tree. ASM News 70, 19-24.
    • (2004) ASM News , vol.70 , pp. 19-24
    • Harmsen, D.1    Karch, H.2
  • 13
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P. and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 15
    • 78549295476 scopus 로고    scopus 로고
    • Heterogeneity analysis of the 16S rRNA gene sequences of the genus Vibrio
    • Ki, J.S. 2009. Heterogeneity analysis of the 16S rRNA gene sequences of the genus Vibrio. Korean J. Microbiol. 45, 430-434.
    • (2009) Korean J. Microbiol. , vol.45 , pp. 430-434
    • Ki, J.S.1
  • 16
    • 78549295199 scopus 로고    scopus 로고
    • Divergence analysis of 16S rRNA and rpoB gene sequences revealed from the harmful cyanobacterium Microcystis aeruginosa
    • Ki, J.S. 2010. Divergence analysis of 16S rRNA and rpoB gene sequences revealed from the harmful cyanobacterium Microcystis aeruginosa. Korean J. Microbiol. 46, 296-302.
    • (2010) Korean J. Microbiol. , vol.46 , pp. 296-302
    • Ki, J.S.1
  • 17
    • 73349127511 scopus 로고    scopus 로고
    • Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species
    • Ki, J.S., R. Zhang, W. Zhang, Y.L. Huang, and P.-Y. Qian. 2009a. Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species. Microb. Ecol. 58, 679-691.
    • (2009) Microb. Ecol. , vol.58 , pp. 679-691
    • Ki, J.S.1    Zhang, R.2    Zhang, W.3    Huang, Y.L.4    Qian, P.-Y.5
  • 18
    • 80055105272 scopus 로고    scopus 로고
    • Comparison of phytoplankton communities of six dam lakes in the Naktong river system
    • Kim, Y.J. and J.H. Lee. 1996. Comparison of phytoplankton communities of six dam lakes in the Naktong river system. Korean J. Limnol. 29, 347-362.
    • (1996) Korean J. Limnol. , vol.29 , pp. 347-362
    • Kim, Y.J.1    Lee, J.H.2
  • 19
    • 0001385420 scopus 로고
    • Modern approach to the classification system of Cyanophytes 4 - Nostocales
    • Komarek, J. and K. Anagnostidis. 1989. Modern approach to the classification system of Cyanophytes 4 - Nostocales. Arch Hydrobiol. 82, 247-345.
    • (1989) Arch Hydrobiol , vol.82 , pp. 247-345
    • Komarek, J.1    Anagnostidis, K.2
  • 20
    • 2342484595 scopus 로고    scopus 로고
    • Patterns of phytoplankton community structure at inlet site (Sanggul-Ri) in Lake Soyang from 1984 to 1997
    • Lee, E.J., B.C. Kim, and K.S. Cho. 1998. Patterns of phytoplankton community structure at inlet site (Sanggul-Ri) in Lake Soyang from 1984 to 1997. Korean J. Limnol. 31, 119-128.
    • (1998) Korean J. Limnol. , vol.31 , pp. 119-128
    • Lee, E.J.1    Kim, B.C.2    Cho, K.S.3
  • 21
  • 23
    • 0020479714 scopus 로고
    • Isolation and physical mapping of nitrogen fixation genes from the cyanobacterium Anabaena 7120
    • Rice, D., B.J. Mazur, and R. Haselkorn. 1982. Isolation and physical mapping of nitrogen fixation genes from the cyanobacterium Anabaena 7120. J. Biol. Chem. 257, 13157-13163.
    • (1982) J. Biol. Chem. , vol.257 , pp. 13157-13163
    • Rice, D.1    Mazur, B.J.2    Haselkorn, R.3
  • 24
    • 33846810160 scopus 로고    scopus 로고
    • The phylogenetic significance of peptidoglycan types: molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes
    • Richert, K., E. Brambilla, and Stackebrandt. 2007. The phylogenetic significance of peptidoglycan types: molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes. Syst. Appl. Microbiol. 30, 102-108.
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 102-108
    • Richert, K.1    Brambilla, E.2    Stackebrandt3
  • 25
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier, R.Y., R. Kunisawa, M. Mandel, and G. Cohen-Bazire. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35, 171-205.
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 26
    • 0033864647 scopus 로고    scopus 로고
    • Determinative value of a portion of the nifH sequence for the genera Nostoc and Anabaena (cyanobacteria)
    • Tamas, I., Z. Svircev, and S.G. Andersson. 2000. Determinative value of a portion of the nifH sequence for the genera Nostoc and Anabaena (cyanobacteria). Curr. Microbiol. 41, 197-200.
    • (2000) Curr. Microbiol. , vol.41 , pp. 197-200
    • Tamas, I.1    Svircev, Z.2    Andersson, S.G.3
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 28
    • 0027968068 scopus 로고    scopus 로고
    • Clustal X: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J.D., D.G. Higgins, and T.J. Gibbson. 1997. Clustal X: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673.
    • (1997) Nucleic Acids Res , vol.22 , pp. 4673
    • Thompson, J.D.1    Higgins, D.G.2    Gibbson, T.J.3
  • 29
    • 0021345761 scopus 로고
    • Nucleotide sequence of the 16S-23S spacer region in the rrnA operon from a blue-green alga, Anacystis nidulans
    • Tomioka, N. and Sugiura, M. 1984, Nucleotide sequence of the 16S-23S spacer region in the rrnA operon from a blue-green alga, Anacystis nidulans. Mol. Gen. Gen. 193, 427-430.
    • (1984) Mol. Gen. Gen. , vol.193 , pp. 427-430
    • Tomioka, N.1    Sugiura, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.