-
1
-
-
0029474958
-
Vibrios in the marine and estuarine environments
-
Huq A, Colwell RR (1995) Vibrios in the marine and estuarine environments. J Mar Biotechnol 3: 60-63.
-
(1995)
J Mar Biotechnol
, vol.3
, pp. 60-63
-
-
Huq, A.1
Colwell, R.R.2
-
2
-
-
0002660967
-
The ecology of Vibrio cholera
-
D. Barua and W. B. I. Greenough (Eds.), New York: Plenum
-
Colwell RR, Soira WM (1992) The ecology of Vibrio cholera. In: Barua D, Greenough WBI (eds) Cholera. Plenum, New York, pp 1-36.
-
(1992)
Cholera
, pp. 1-36
-
-
Colwell, R.R.1
Soira, W.M.2
-
3
-
-
0009438012
-
Comparison by plasmid profiling of Vibrio salmonicida strains isolated from diseased fish from different north European and Canadian coastal areas of the Atlantic Ocean
-
Sorum H, Myhr E, Zwicker BM, Lillehaug A (1993) Comparison by plasmid profiling of Vibrio salmonicida strains isolated from diseased fish from different north European and Canadian coastal areas of the Atlantic Ocean. Can J Fish Aquat Sci 50: 247-250.
-
(1993)
Can J Fish Aquat Sci
, vol.50
, pp. 247-250
-
-
Sorum, H.1
Myhr, E.2
Zwicker, B.M.3
Lillehaug, A.4
-
4
-
-
0034159990
-
Vibrio species associated with mortalities in hatchery-reared turbot (Colistium nudipinnis) and brill (C. guntheri) in New Zealand
-
Diggles BK, Carson J, Hine PM, Hickman RW, Tait MJ (2000) Vibrio species associated with mortalities in hatchery-reared turbot (Colistium nudipinnis) and brill (C. guntheri) in New Zealand. Aquaculture 183: 1-12.
-
(2000)
Aquaculture
, vol.183
, pp. 1-12
-
-
Diggles, B.K.1
Carson, J.2
Hine, P.M.3
Hickman, R.W.4
Tait, M.J.5
-
5
-
-
0034646281
-
Toxic factors of Vibrio strains pathogenic to shrimp
-
Goarant C, Herlin J, Marteau BR, AL MC, Martin B (2000) Toxic factors of Vibrio strains pathogenic to shrimp. Dis Aquat Org 40: 101-107.
-
(2000)
Dis Aquat Org
, vol.40
, pp. 101-107
-
-
Goarant, C.1
Herlin, J.2
Marteau, B.R.3
Al, M.C.4
Martin, B.5
-
6
-
-
0033993650
-
Inhibitory effects of ovoglobulins on bacillary necrosis in larvae of the Pacific oyster, Crassostrea gigas
-
Takahashi KG, Nakamura A, Mori K (2000) Inhibitory effects of ovoglobulins on bacillary necrosis in larvae of the Pacific oyster, Crassostrea gigas. J Invertebr Pathol 75: 212-217.
-
(2000)
J Invertebr Pathol
, vol.75
, pp. 212-217
-
-
Takahashi, K.G.1
Nakamura, A.2
Mori, K.3
-
7
-
-
3242798356
-
Diversity and dynamics of a North Atlantic coastal Vibrio community
-
Thompson JR, Randa MA, Marcelino LA, Tomita-Mitchell A, Lim E, Polz MF (2004) Diversity and dynamics of a North Atlantic coastal Vibrio community. Appl Environ Microbiol 70: 4103-4110.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4103-4110
-
-
Thompson, J.R.1
Randa, M.A.2
Marcelino, L.A.3
Tomita-Mitchell, A.4
Lim, E.5
Polz, M.F.6
-
8
-
-
33747624481
-
Detection and quantification of Vibrio populations using denaturant gradient gel electrophoresis
-
Eiler A, Bertilsson S (2006) Detection and quantification of Vibrio populations using denaturant gradient gel electrophoresis. J Microbiol Methods 67: 339-348.
-
(2006)
J Microbiol Methods
, vol.67
, pp. 339-348
-
-
Eiler, A.1
Bertilsson, S.2
-
9
-
-
33846224254
-
Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination
-
Tarr CL, Patel JS, Puhr ND, Sowers EG, Bopp CA, Strockbine NA (2007) Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination. J Clin Microbiol 45: 134-140.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 134-140
-
-
Tarr, C.L.1
Patel, J.S.2
Puhr, N.D.3
Sowers, E.G.4
Bopp, C.A.5
Strockbine, N.A.6
-
10
-
-
0032954830
-
Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus
-
Chun J, Huq A, Colwell RR (1999) Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus. Appl Environ Microbiol 65: 2202-2208.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2202-2208
-
-
Chun, J.1
Huq, A.2
Colwell, R.R.3
-
11
-
-
25144436280
-
Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
-
Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S, Hoste B, Munn CB, Swings J (2005) Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71: 5107-5115.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5107-5115
-
-
Thompson, F.L.1
Gevers, D.2
Thompson, C.C.3
Dawyndt, P.4
Naser, S.5
Hoste, B.6
Munn, C.B.7
Swings, J.8
-
12
-
-
0030054296
-
New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
-
Gürtler V, Stanisich VA (1996) New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142: 3-16.
-
(1996)
Microbiology
, vol.142
, pp. 3-16
-
-
Gürtler, V.1
Stanisich, V.A.2
-
13
-
-
0032845918
-
Identification of oligonucleotide primers targeted at the 16S-23S rDNA intergenic spacers for genus- and species-specific detection of Aeromonads
-
Kong RYC, Pelling A, So CL, Wu RSS (1999) Identification of oligonucleotide primers targeted at the 16S-23S rDNA intergenic spacers for genus- and species-specific detection of Aeromonads. Mar Pollut Bull 38: 802-808.
-
(1999)
Mar Pollut Bull
, vol.38
, pp. 802-808
-
-
Kong, R.Y.C.1
Pelling, A.2
So, C.L.3
Wu, R.S.S.4
-
14
-
-
0034333428
-
Structural variation in the 16S-23S rRNA intergenic spacers of Vibrio parahaemolyticus
-
Maeda T, Takada N, Furushita M, Shiba T (2000) Structural variation in the 16S-23S rRNA intergenic spacers of Vibrio parahaemolyticus. FEMS Microbiol Lett 192: 73-77.
-
(2000)
FEMS Microbiol Lett
, vol.192
, pp. 73-77
-
-
Maeda, T.1
Takada, N.2
Furushita, M.3
Shiba, T.4
-
15
-
-
0035671845
-
Seasonal abundance and distribution of Vibrio cholera in coastal waters quantified by a 16S-23S intergenic spacer probe
-
Jiang SC, Fu W (2001) Seasonal abundance and distribution of Vibrio cholera in coastal waters quantified by a 16S-23S intergenic spacer probe. Microb Ecol 42: 540-548.
-
(2001)
Microb Ecol
, vol.42
, pp. 540-548
-
-
Jiang, S.C.1
Fu, W.2
-
16
-
-
0035992258
-
Analysis of the 16S-23S rDNA intergenic spacers (IGSs) of marine vibrios for species-specific signature DNA sequences
-
Lee SK, Wang HZ, Law SH, Wu RS, Kong RY (2002) Analysis of the 16S-23S rDNA intergenic spacers (IGSs) of marine vibrios for species-specific signature DNA sequences. Mar Pollut Bull 44: 412-420.
-
(2002)
Mar Pollut Bull
, vol.44
, pp. 412-420
-
-
Lee, S.K.1
Wang, H.Z.2
Law, S.H.3
Wu, R.S.4
Kong, R.Y.5
-
17
-
-
0034926241
-
Vibrio lentus sp. nov., isolated from Mediterranean oysters
-
Macian MC, Ludwig W, Aznar R, Grimont PDA, Schleifer KH, Garay E, Pujalte MJ (2001) Vibrio lentus sp. nov., isolated from Mediterranean oysters. Int J Syst Evol Microbiol 51: 1449-1456.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1449-1456
-
-
Macian, M.C.1
Ludwig, W.2
Aznar, R.3
Grimont, P.D.A.4
Schleifer, K.H.5
Garay, E.6
Pujalte, M.J.7
-
18
-
-
0345328099
-
Evolution of symbiosis in the Vibrionaceae: A combined approach using molecules and physiology
-
Nishiguchi MK, Nair VS (2003) Evolution of symbiosis in the Vibrionaceae: a combined approach using molecules and physiology. Int J Syst Evol Microbiol 53: 2019-2026.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 2019-2026
-
-
Nishiguchi, M.K.1
Nair, V.S.2
-
19
-
-
3042532644
-
Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences
-
Le Roux F, Gay M, Lambert C, Nicolas JL, Gouy M, Berthe F (2004) Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences. Dis Aquat Org 58: 143-150.
-
(2004)
Dis Aquat Org
, vol.58
, pp. 143-150
-
-
Le Roux, F.1
Gay, M.2
Lambert, C.3
Nicolas, J.L.4
Gouy, M.5
Berthe, F.6
-
20
-
-
1342271382
-
From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria
-
Lerat E, Daubin V, Moran NA (2003) From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLOS Biol 1: E19.
-
(2003)
PLOS Biol
, vol.1
-
-
Lerat, E.1
Daubin, V.2
Moran, N.A.3
-
21
-
-
0030669211
-
RpoB sequence analysis as a novel basis for bacterial identification
-
Mollet C, Drancourt M, Raoult D (1997) rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26: 1005-1011.
-
(1997)
Mol Microbiol
, vol.26
, pp. 1005-1011
-
-
Mollet, C.1
Drancourt, M.2
Raoult, D.3
-
22
-
-
0033860832
-
RpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
-
Dahllöf I, Baillie H, Kjelleberg S (2000) rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl Environ Microbiol 66: 3376-3380.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3376-3380
-
-
Dahllöf, I.1
Baillie, H.2
Kjelleberg, S.3
-
23
-
-
0242405650
-
Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences
-
Khamis A, Colson P, Raoult D, Scola BL (2003) Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences. Appl Environ Microbiol 69: 6740-6749.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6740-6749
-
-
Khamis, A.1
Colson, P.2
Raoult, D.3
Scola, B.L.4
-
24
-
-
8444238946
-
Evolution of the RNA polymerase B′ subunit gene (rpoB′) in Halobacteriales: A complementary molecular marker to the SSU rRNA gene
-
Walsh DA, Bapteste E, Kamekura M, Doolittle WF (2004) Evolution of the RNA polymerase B′ subunit gene (rpoB′) in Halobacteriales: a complementary molecular marker to the SSU rRNA gene. Mol Biol Evol 21: 2340-2351.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2340-2351
-
-
Walsh, D.A.1
Bapteste, E.2
Kamekura, M.3
Doolittle, W.F.4
-
25
-
-
33646070609
-
Molecular characterization of the rpoB gene in Brucella species: New potential molecular markers for genotyping
-
Marianelli C, Ciuchini F, Tarantino M, Pasquali P, Adone R (2006) Molecular characterization of the rpoB gene in Brucella species: new potential molecular markers for genotyping. Microbes Infect 8: 860-865.
-
(2006)
Microbes Infect
, vol.8
, pp. 860-865
-
-
Marianelli, C.1
Ciuchini, F.2
Tarantino, M.3
Pasquali, P.4
Adone, R.5
-
26
-
-
0036659697
-
Multivariate optimization of polymerase chain reaction for microbial community analysis
-
Dahllöf I, Kjelleberg S (2002) Multivariate optimization of polymerase chain reaction for microbial community analysis. Mar Biotechnol 4: 423-430.
-
(2002)
Mar Biotechnol
, vol.4
, pp. 423-430
-
-
Dahllöf, I.1
Kjelleberg, S.2
-
27
-
-
0038168493
-
Identification of Bacillus anthracis by rpoB sequence analysis and multiplex PCR
-
Ko KS, Kim JM, Kim JW, Jung BY, Kim W, Kim IJ, Kook YH (2003) Identification of Bacillus anthracis by rpoB sequence analysis and multiplex PCR. J Clin Microbiol 41: 2908-2914.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 2908-2914
-
-
Ko, K.S.1
Kim, J.M.2
Kim, J.W.3
Jung, B.Y.4
Kim, W.5
Kim, I.J.6
Kook, Y.H.7
-
28
-
-
62649143667
-
Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification
-
Ki J-S, Zhang W, Qian P-Y (2009) Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification. J Microbiol Methods 77: 48-57.
-
(2009)
J Microbiol Methods
, vol.77
, pp. 48-57
-
-
Ki, J.-S.1
Zhang, W.2
Qian, P.-Y.3
-
29
-
-
33644884486
-
Genetic diversity of Legionella pneumophila inferred from rpoB and dotA sequences
-
Ko KS, Miyamoto H, Lee HK, Park MY, Fukuda K, Park BJ, Kook YH (2006) Genetic diversity of Legionella pneumophila inferred from rpoB and dotA sequences. Clin Microbiol Infect 12: 254-261.
-
(2006)
Clin Microbiol Infect
, vol.12
, pp. 254-261
-
-
Ko, K.S.1
Miyamoto, H.2
Lee, H.K.3
Park, M.Y.4
Fukuda, K.5
Park, B.J.6
Kook, Y.H.7
-
30
-
-
33846810160
-
The phylogenetic significance of peptidoglycan types: Molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes
-
Richert K, Brambilla E, Stackebrandt E (2007) The phylogenetic significance of peptidoglycan types: Molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes. Syst Appl Microbiol 30: 102-108.
-
(2007)
Syst Appl Microbiol
, vol.30
, pp. 102-108
-
-
Richert, K.1
Brambilla, E.2
Stackebrandt, E.3
-
31
-
-
20444387553
-
Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates
-
Ait Tayeb L, Ageron E, Grimont F, Grimont PA (2005) Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates. Res Microbiol 156: 763-773.
-
(2005)
Res Microbiol
, vol.156
, pp. 763-773
-
-
Ait Tayeb, L.1
Ageron, E.2
Grimont, F.3
Grimont, P.A.4
-
32
-
-
0036206021
-
RpoB gene sequence-based identification of Staphylococcus species
-
Drancourt M, Raoult D (2002) rpoB gene sequence-based identification of Staphylococcus species. J Clin Microbiol 40: 1333-1338.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1333-1338
-
-
Drancourt, M.1
Raoult, D.2
-
33
-
-
1842422488
-
Phylogenetic analysis of the genera Streptomyces and Kitasatospora based on partial RNA polymerase beta-subunit gene (rpoB) sequences
-
Kim BJ, Kim CJ, Chun J, Koh YH, Lee SH, Hyun JW, Cha CY, Kook YH (2004) Phylogenetic analysis of the genera Streptomyces and Kitasatospora based on partial RNA polymerase beta-subunit gene (rpoB) sequences. Int J Syst Evol Microbiol 54: 593-598.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 593-598
-
-
Kim, B.J.1
Kim, C.J.2
Chun, J.3
Koh, Y.H.4
Lee, S.H.5
Hyun, J.W.6
Cha, C.Y.7
Kook, Y.H.8
-
34
-
-
0037375231
-
A distinctive epibiotic bacterial community on the soft coral Dendronephthya sp. and antibacterial activity of coral tissue extracts suggest a chemical mechanism against bacterial epibiosis
-
Harder T, Lau CKS, Dobretsov S, Fang TK, Qian P-Y (2003) A distinctive epibiotic bacterial community on the soft coral Dendronephthya sp. and antibacterial activity of coral tissue extracts suggest a chemical mechanism against bacterial epibiosis. FEMS Microbiol Ecol 43: 337-347.
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 337-347
-
-
Harder, T.1
Lau, C.K.S.2
Dobretsov, S.3
Fang, T.K.4
Qian, P.-Y.5
-
35
-
-
34547852259
-
Particle-attached and free-living bacterial communities in a contrasting marine environment: Victoria Harbor, Hong Kong
-
Zhang R, Liu B, Lau SC, Ki J-S, Qian P-Y (2007) Particle-attached and free-living bacterial communities in a contrasting marine environment: Victoria Harbor, Hong Kong. FEMS Microbiol Ecol 61: 496-508.
-
(2007)
FEMS Microbiol Ecol
, vol.61
, pp. 496-508
-
-
Zhang, R.1
Liu, B.2
Lau, S.C.3
Ki, J.-S.4
Qian, P.-Y.5
-
36
-
-
37649011443
-
Molecular Microbial diversity of Victoria Harbor sediments: I. Bacterial community accessment based on four 16S rDNA clone libraries
-
Zhang W, Ki J-S, Qian P-Y (2008) Molecular Microbial diversity of Victoria Harbor sediments: I. Bacterial community accessment based on four 16S rDNA clone libraries. Estuar Coast Shelf Sci 76: 668-681.
-
(2008)
Estuar Coast Shelf Sci
, vol.76
, pp. 668-681
-
-
Zhang, W.1
Ki, J.-S.2
Qian, P.-Y.3
-
37
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
38
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
39
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
40
-
-
34047134496
-
Informative characters on the 12 divergent domains within complete LSU rDNA sequences of the harmful dinoflagellate Alexandrium genus (Dinophyceae)
-
Ki J-S, Han M-S (2007) Informative characters on the 12 divergent domains within complete LSU rDNA sequences of the harmful dinoflagellate Alexandrium genus (Dinophyceae). J Eukaryot Microbiol 54: 210-219.
-
(2007)
J Eukaryot Microbiol
, vol.54
, pp. 210-219
-
-
Ki, J.-S.1
Han, M.-S.2
-
41
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
43
-
-
46549087918
-
Seasonal and spatial dynamics of nutrients and phytoplankton biomass in Victoria Harbour and its vicinity before and after sewage abatement
-
Ho AY, Xu J, Yin K, Yuan X, He L, Jiang Y, Lee JH, Anderson DM, Harrison PJ (2008) Seasonal and spatial dynamics of nutrients and phytoplankton biomass in Victoria Harbour and its vicinity before and after sewage abatement. Mar Pollut Bull 57: 313-324.
-
(2008)
Mar Pollut Bull
, vol.57
, pp. 313-324
-
-
Ho, A.Y.1
Xu, J.2
Yin, K.3
Yuan, X.4
He, L.5
Jiang, Y.6
Lee, J.H.7
Anderson, D.M.8
Harrison, P.J.9
|