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Volumn 46, Issue 3, 2010, Pages 296-302

Divergence analysis of 16S rRNA and rpoB gene sequences revealed from the harmful cyanobacterium Microcystis aeruginosa;Korean Source

Author keywords

Cyanobacteria; DNA similarity; Genetic distance; Microcystis; RpoB gene

Indexed keywords

CHROOCOCCALES; CYANOBACTERIA; MICROCYSTIS; MICROCYSTIS AERUGINOSA;

EID: 78549295199     PISSN: 04402413     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (5)

References (42)
  • 1
    • 33846641262 scopus 로고    scopus 로고
    • Microbial community of cyanobacteria mats in the intertidal zone of oil-polluted coast of Saudi Arabia
    • Al-Thukair, A.A., R.M. Abed, and L. Mohamed. 2007. Microbial community of cyanobacteria mats in the intertidal zone of oil-polluted coast of Saudi Arabia. Mar. Pollut. Bull. 54, 173-179.
    • (2007) Mar. Pollut. Bull. , vol.54 , pp. 173-179
    • Al-Thukair, A.A.1    Abed, R.M.2    Mohamed, L.3
  • 3
    • 10444235787 scopus 로고    scopus 로고
    • Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria
    • Castiglioni, B., E. Rizzi, A. Frosini, K. Sivonen, P. Rajaniemi, A. Rantala, M.A. Mugnai, and et al. 2004. Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria. Appl. Environ. Microbiol. 70, 7161-7172.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7161-7172
    • Castiglioni, B.1    Rizzi, E.2    Frosini, A.3    Sivonen, K.4    Rajaniemi, P.5    Rantala, A.6    Mugnai, M.A.7
  • 5
    • 1842532305 scopus 로고    scopus 로고
    • Development of oligonucleotide primers for the detection of harmful Microcystis in water
    • Cho, J.E., S.W. Bang, and M.S. Han. 2004. Development of oligonucleotide primers for the detection of harmful Microcystis in water. Bull. Environ. Contam. Toxicol. 72, 655-662.
    • (2004) Bull. Environ. Contam. Toxicol. , vol.72 , pp. 655-662
    • Cho, J.E.1    Bang, S.W.2    Han, M.S.3
  • 6
    • 0033860832 scopus 로고    scopus 로고
    • rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • Dahllöf, I., H. Baillie, and S. Kjelleberg. 2000. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66, 3376-3380.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3376-3380
    • Dahllöf, I.1    Baillie, H.2    Kjelleberg, S.3
  • 7
    • 84986841647 scopus 로고
    • Properties of Microcystis aeruginosa and M. flosaquae (Cyanophyta) in culture: Taxonomic implications
    • Doers, M.P. and D.L. Parker. 1988. Properties of Microcystis aeruginosa and M. flosaquae (Cyanophyta) in culture: taxonomic implications. J. Phycol. 24, 502-508.
    • (1988) J. Phycol. , vol.24 , pp. 502-508
    • Doers, M.P.1    Parker, D.L.2
  • 8
    • 0031734090 scopus 로고    scopus 로고
    • Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256
    • Fegatella, F., J. Lim, S. Kjelleberg, and R. Cavicchioli. 1998. Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256. Appl. Environ. Microbiol. 64, 4433-4438.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4433-4438
    • Fegatella, F.1    Lim, J.2    Kjelleberg, S.3    Cavicchioli, R.4
  • 9
    • 0034106372 scopus 로고    scopus 로고
    • Microcystin-LR toxicídynamics, induced pathology, and immunohistochemical localization in livers of blue-green algae exposed rainbow trout (Oncorhynchus mykiss)
    • Fischer, W.J., B.C. Hitzfeld, F. Tencalla, J.E. Eriksson, A. Mikhailov, and D.R. Dietrich. 2000. Microcystin-LR toxicídynamics, induced pathology, and immunohistochemical localization in livers of blue-green algae exposed rainbow trout (Oncorhynchus mykiss). Toxicol. Sci. 54, 365-373.
    • (2000) Toxicol. Sci. , vol.54 , pp. 365-373
    • Fischer, W.J.1    Hitzfeld, B.C.2    Tencalla, F.3    Eriksson, J.E.4    Mikhailov, A.5    Dietrich, D.R.6
  • 11
    • 0033944639 scopus 로고    scopus 로고
    • Assessing potential health risks from microcystin toxins in blue-green algae dietary supplements
    • Gilroy, D.J., K.W. Kauffman, R.A. Hall, X. Huang, and F.S. Chu. 2000. Assessing potential health risks from microcystin toxins in blue-green algae dietary supplements. Environ. Health Perspect. 108, 435-439.
    • (2000) Environ. Health Perspect. , vol.108 , pp. 435-439
    • Gilroy, D.J.1    Kauffman, K.W.2    Hall, R.A.3    Huang, X.4    Chu, F.S.5
  • 12
    • 63149119819 scopus 로고    scopus 로고
    • Quantification of toxic Microcystis and evaluation of its dominance ratio in blooms using real-time PCR
    • Ha, J.H., T. Hidaka, and H. Tsunos. 2009. Quantification of toxic Microcystis and evaluation of its dominance ratio in blooms using real-time PCR. Environ. Sci. Technol 43, 812-818.
    • (2009) Environ. Sci. Technol. , vol.43 , pp. 812-818
    • Ha, J.H.1    Hidaka, T.2    Tsunos, H.3
  • 13
    • 5644283065 scopus 로고    scopus 로고
    • 16S rDNA for diagnosing pathogens: A living tree
    • Harmsen, D. and H. Karch. 2004. 16S rDNA for diagnosing pathogens: a living tree. American Soc. for Microbiol. News 70, 19-24.
    • (2004) American Soc. for Microbiol. News , vol.70 , pp. 19-24
    • Harmsen, D.1    Karch, H.2
  • 14
    • 0001490653 scopus 로고    scopus 로고
    • Microcystin profiles and contents in Danish populations of cyanobacteria/blue-green algae as determined by HPLC
    • Henriksen, P. 1996. Microcystin profiles and contents in Danish populations of cyanobacteria/blue-green algae as determined by HPLC. Phycologia 35, 102-110.
    • (1996) Phycologia , vol.35 , pp. 102-110
    • Henriksen, P.1
  • 15
    • 51549112734 scopus 로고    scopus 로고
    • Cyanobacterial bioactive molecules-an overview of their toxic properties
    • Jaiswal, P., P.K. Singh, and R. Prasanna. 2008. Cyanobacterial bioactive molecules-an overview of their toxic properties. Can. J. Microbiol. 54, 701-717.
    • (2008) Can. J. Microbiol. , vol.54 , pp. 701-717
    • Jaiswal, P.1    Singh, P.K.2    Prasanna, R.3
  • 16
    • 78549238118 scopus 로고    scopus 로고
    • Changes in microcystin production in Microcystis aeruginosa exposed to different concentrations of filtered water from phytoplanktivorous and omnivorous fish
    • Jang, M.H., J.M. Jung, J.D. Yoon, Y.J. Lee, and K. Ha. 2007. Changes in microcystin production in Microcystis aeruginosa exposed to different concentrations of filtered water from phytoplanktivorous and omnivorous fish. Korean J. Limnol. 40, 294-302.
    • (2007) Korean J. Limnol. , vol.40 , pp. 294-302
    • Jang, M.H.1    Jung, J.M.2    Yoon, J.D.3    Lee, Y.J.4    Ha, K.5
  • 17
    • 40949129063 scopus 로고    scopus 로고
    • Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843
    • Kaneko, T., N. Nakajima, S. Okamoto, I. Suzuki, Y. Tanabe, M. Tamaoki, Y. Nakamura, and et al. 2007. Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res. 14, 247-256.
    • (2007) DNA Res , vol.14 , pp. 247-256
    • Kaneko, T.1    Nakajima, N.2    Okamoto, S.3    Suzuki, I.4    Tanabe, Y.5    Tamaoki, M.6    Nakamura, Y.7
  • 18
    • 62649143667 scopus 로고    scopus 로고
    • Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification
    • Ki, J.S., W. Zhang, and P.Y. Qian. 2009. Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification. J. Microbiol. Methods 77, 48-57.
    • (2009) J. Microbiol. Methods , vol.77 , pp. 48-57
    • Ki, J.S.1    Zhang, W.2    Qian, P.Y.3
  • 19
    • 73349127511 scopus 로고    scopus 로고
    • Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species
    • Ki, J.S., R. Zhang, W. Zhang, Y.L. Huang, and P.Y. Qian. 2009. Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species. Microb Ecol. 58, 679-691.
    • (2009) Microb Ecol , vol.58 , pp. 679-691
    • Ki, J.S.1    Zhang, R.2    Zhang, W.3    Huang, Y.L.4    Qian, P.Y.5
  • 20
    • 78549295476 scopus 로고    scopus 로고
    • Heterogeneity analysis of the 16S rRNA gene sequences of the genus Vibrio
    • Ki, J.S. 2009. Heterogeneity analysis of the 16S rRNA gene sequences of the genus Vibrio. Korean J. Microbiol. 45, 430-434.
    • (2009) Korean J. Microbiol. , vol.45 , pp. 430-434
    • Ki, J.S.1
  • 22
    • 78549235360 scopus 로고    scopus 로고
    • The occurrence of microcystins in the Naktong River
    • Kim, W.H., A.R. Choi, and J.A. Lee. 1999. The occurrence of microcystins in the Naktong River. Algae 14, 319-322.
    • (1999) Algae , vol.14 , pp. 319-322
    • Kim, W.H.1    Choi, A.R.2    Lee, J.A.3
  • 23
    • 0001155012 scopus 로고
    • A review of water-bloom forming Microcystis species, with regard to population from Japan
    • Komarek, J. 1991. A review of water-bloom forming Microcystis species, with regard to population from Japan. Arch. Hydrobiol. Suppl. 92, 115-127.
    • (1991) Arch. Hydrobiol. Suppl. , vol.92 , pp. 115-127
    • Komarek, J.1
  • 25
    • 68549135321 scopus 로고    scopus 로고
    • Application of quantum-dot nanocrystals for cyanobacterial toxin-microcystin detection
    • Lee, J.W., H.W. Yu, and I.S. Kim. 2004. Application of quantum-dot nanocrystals for cyanobacterial toxin-microcystin detection. J. Kor. Soc. Water Qual. 23, 705-711.
    • (2004) J. Kor. Soc. Water Qual. , vol.23 , pp. 705-711
    • Lee, J.W.1    Yu, H.W.2    Kim, I.S.3
  • 26
    • 78549235722 scopus 로고    scopus 로고
    • Seasonal variations of cyanobacterial toxins (mirocystins) in Yeongchun Reservoir
    • Lee, K.L., W.H. Jheong, J.M. Kim, Y.S. Kim, H.J. Choi, and H.S. Kim. 2008. Seasonal variations of cyanobacterial toxins (mirocystins) in Yeongchun Reservoir. Korean J. Limnol. 41, 264-274.
    • (2008) Korean J. Limnol. , vol.41 , pp. 264-274
    • Lee, K.L.1    Jheong, W.H.2    Kim, J.M.3    Kim, Y.S.4    Choi, H.J.5    Kim, H.S.6
  • 27
    • 0035065920 scopus 로고    scopus 로고
    • Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera
    • Lyra, C., S. Suomalainen, M. Gugger, C. Vezie, P. Sundman, L. Paulin, and K. Sivonen. 2001. Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int. J. Syst. Evol. Microbiol. 51, 513-526.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 513-526
    • Lyra, C.1    Suomalainen, S.2    Gugger, M.3    Vezie, C.4    Sundman, P.5    Paulin, L.6    Sivonen, K.7
  • 28
    • 78549232557 scopus 로고    scopus 로고
    • Ministry of Environment. Environmental white paper, Seoul
    • Ministry of Environment. 2000. Environmental white paper, Seoul.
    • (2000)
  • 29
    • 0036923541 scopus 로고    scopus 로고
    • Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1
    • Nakamura, Y., T. Kaneko, S. Sato, M. Ikeuchi, H. Katoh, S. Sasamoto, A. Watanabe, and et al. 2002. Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res. 9, 123-130.
    • (2002) DNA Res , vol.9 , pp. 123-130
    • Nakamura, Y.1    Kaneko, T.2    Sato, S.3    Ikeuchi, M.4    Katoh, H.5    Sasamoto, S.6    Watanabe, A.7
  • 30
    • 0028871685 scopus 로고
    • Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus
    • Neilan, B.A., D. Jacobs, and A.E. Goodman. 1995. Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus. Appl. Environ. Microbiol. 61, 3875-3883.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3875-3883
    • Neilan, B.A.1    Jacobs, D.2    Goodman, A.E.3
  • 32
    • 0032873121 scopus 로고    scopus 로고
    • Genetic analysis of the peptide synthetase genes for a cyclic heptapeptide microcystin in Microcystis spp
    • Nishizawa, T., M. Asayama, K. Fujii, K. Harada, and M. Shirai. 1999. Genetic analysis of the peptide synthetase genes for a cyclic heptapeptide microcystin in Microcystis spp. J. Biochem. 126, 520-526.
    • (1999) J. Biochem. , vol.126 , pp. 520-526
    • Nishizawa, T.1    Asayama, M.2    Fujii, K.3    Harada, K.4    Shirai, M.5
  • 33
    • 0034986003 scopus 로고    scopus 로고
    • A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the rules of the Bacteriological Code
    • Otsuka, S., S. Suda, S. Shibata, H. Oyaizu, S. Matsumoto, and M.M. Watanabe. 2001. A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the rules of the Bacteriological Code. Int. J. Syst. Evol. Microbiol. 51, 873-879.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 873-879
    • Otsuka, S.1    Suda, S.2    Shibata, S.3    Oyaizu, H.4    Matsumoto, S.5    Watanabe, M.M.6
  • 34
    • 33846810160 scopus 로고    scopus 로고
    • The phylogenetic significance of peptidoglycan types: Molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes
    • Richert, K., E. Brambilla, and Stackebrandt. 2007. The phylogenetic significance of peptidoglycan types: Molecular analysis of the genera Microbacterium and Aureobacterium based upon sequence comparison of gyrB, rpoB, recA and ppk and 16S rRNA genes. Syst. Appl. Microbiol. 30, 102-108.
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 102-108
    • Richert, K.1    Brambilla, E.2    Stackebrandt3
  • 35
    • 0030751308 scopus 로고    scopus 로고
    • Strain characterization and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8
    • Rudi, K., O.M. Skulberg, F. Larsen, and K.S. Jakobsen. 1997. Strain characterization and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8. Appl. Environ. Microbiol. 63, 2593-2599.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2593-2599
    • Rudi, K.1    Skulberg, O.M.2    Larsen, F.3    Jakobsen, K.S.4
  • 36
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier, R.Y., R. Kunisawa, M. Mandel, and G. Cohen-Bazire. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35, 171-205.
    • (1971) Bacteriol. Rev. , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 37
    • 78549283405 scopus 로고    scopus 로고
    • Distribution of cyanotoxin microcystin-LR in Han River system and ecological park in Seoul and Kyunggi districts
    • Suh, M.Y., B.H. Kim, and M.S. Han. 2005. Distribution of cyanotoxin microcystin-LR in Han River system and ecological park in Seoul and Kyunggi districts. Korean J. Limnol. 38, 237-248.
    • (2005) Korean J. Limnol. , vol.38 , pp. 237-248
    • Suh, M.Y.1    Kim, B.H.2    Han, M.S.3
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 0027968068 scopus 로고    scopus 로고
    • Clustal X: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J.D., D.G. Higgins, and T.J. Gibbson. 1997. Clustal X: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673.
    • (1997) Nucleic Acids Res , vol.22 , pp. 4673
    • Thompson, J.D.1    Higgins, D.G.2    Gibbson, T.J.3
  • 40
    • 0035376988 scopus 로고    scopus 로고
    • Detection of toxigenicity by a probe for the microcystin synthetase A gene (mcyA) of the cyanobacteiral genus Microcystis: Comparison of toxicities with 16S rRNA and phycocyanin operon (phycocyanin intergenic spacer) phylogenies
    • Tillett, D., D.L. Parker, and B.A. Neilan. 2001. Detection of toxigenicity by a probe for the microcystin synthetase A gene (mcyA) of the cyanobacteiral genus Microcystis: comparison of toxicities with 16S rRNA and phycocyanin operon (phycocyanin intergenic spacer) phylogenies. Appl. Environ. Microbiol. 67, 2810-2818
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2810-2818
    • Tillett, D.1    Parker, D.L.2    Neilan, B.A.3
  • 41
    • 0021813652 scopus 로고
    • Effects of environmental factors on toxicity of a cyanobacterium (Microcystis aeruginosa) under culture conditions
    • Watanabae, M.F. and S. Oishi. 1985. Effects of environmental factors on toxicity of a cyanobacterium (Microcystis aeruginosa) under culture conditions. Appl. Environ. Microbiol. 49, 1342-1344.
    • (1985) Appl. Environ. Microbiol. , vol.49 , pp. 1342-1344
    • Watanabae, M.F.1    Oishi, S.2
  • 42
    • 54449093397 scopus 로고    scopus 로고
    • The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
    • Welsh, E.A., M. Liberton, J. Stockel, T. Loh, T. Elvitigala, C. Wang, A. Wollam, and et al. 2008. The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. Proc. Natl. Acad. Sci. USA 105, 15094-15099.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 15094-15099
    • Welsh, E.A.1    Liberton, M.2    Stockel, J.3    Loh, T.4    Elvitigala, T.5    Wang, C.6    Wollam, A.7


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