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Volumn 7, Issue 10, 2011, Pages

The Thermoanaerobacter glycobiome reveals mechanisms of pentose and hexose co-utilization in bacteria

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE DEIMINASE; CARBOHYDRATE BINDING PROTEIN; CELLOBIOSE; CYANOCOBALAMIN; ETHANOLAMINE; GLUCOSE; GLUCOSE TRANSPORTER; HEXOSE; PENTOSE; PROPYLENE GLYCOL; XYLOSE; ALCOHOL; ANTITERMINATOR PROTEINS, BACTERIA; BACTERIAL PROTEIN; BIOFUEL; CELLULOSE; RNA BINDING PROTEIN;

EID: 80055070336     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002318     Document Type: Article
Times cited : (41)

References (39)
  • 2
    • 67649111013 scopus 로고    scopus 로고
    • Thermophilic ethanologenesis: future prospects for second-generation bioethanol production
    • Taylor MP, Eley KL, Martin S, Tuffin MI, Burton SG, et al. (2009) Thermophilic ethanologenesis: future prospects for second-generation bioethanol production. Trends Biotechnol 27: 398-405.
    • (2009) Trends Biotechnol , vol.27 , pp. 398-405
    • Taylor, M.P.1    Eley, K.L.2    Martin, S.3    Tuffin, M.I.4    Burton, S.G.5
  • 5
    • 0036209447 scopus 로고    scopus 로고
    • Physiological function of alcohol dehydrogenases and long-chain (C(30)) fatty acids in alcohol tolerance of Thermoanaerobacter ethanolicus
    • Burdette DS, Jung SH, Shen GJ, Hollingsworth RI, Zeikus JG, (2002) Physiological function of alcohol dehydrogenases and long-chain (C(30)) fatty acids in alcohol tolerance of Thermoanaerobacter ethanolicus. Appl Environ Microbiol 68: 1914-1918.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1914-1918
    • Burdette, D.S.1    Jung, S.H.2    Shen, G.J.3    Hollingsworth, R.I.4    Zeikus, J.G.5
  • 6
    • 47549110972 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
    • Gorke B, Stulke J, (2008) Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol 6: 613-624.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 613-624
    • Gorke, B.1    Stulke, J.2
  • 7
    • 73249145992 scopus 로고    scopus 로고
    • Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences
    • Vanfossen AL, Verhaart MR, Kengen SM, Kelly RM, (2009) Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences. Appl Environ Microbiol 75: 7718-7724.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7718-7724
    • Vanfossen, A.L.1    Verhaart, M.R.2    Kengen, S.M.3    Kelly, R.M.4
  • 8
    • 0036946946 scopus 로고    scopus 로고
    • Isolation and characterization of metal-reducing thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado
    • Roh Y, Liu SV, Li G, Huang H, Phelps TJ, et al. (2002) Isolation and characterization of metal-reducing thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado. Appl Environ Microbiol 68: 6013-6020.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6013-6020
    • Roh, Y.1    Liu, S.V.2    Li, G.3    Huang, H.4    Phelps, T.J.5
  • 9
    • 0030777142 scopus 로고    scopus 로고
    • Thermophilic Fe(III)-reducing bacteria from the deep subsurface: The evolutionary implications
    • Liu SV, Zhou JZ, Zhang CL, Cole DR, GajdarziskaJosifovska M, et al. (1997) Thermophilic Fe(III)-reducing bacteria from the deep subsurface: The evolutionary implications. Science 277: 1106-1109.
    • (1997) Science , vol.277 , pp. 1106-1109
    • Liu, S.V.1    Zhou, J.Z.2    Zhang, C.L.3    Cole, D.R.4    Gajdarziska, J.M.5
  • 10
    • 79952136790 scopus 로고    scopus 로고
    • Functional molecular ecological networks
    • Zhou J, Deng Y, Luo F, He Z, Tu Q, et al. (2010) Functional molecular ecological networks. MBio 1 (4): e00169-00110.
    • (2010) MBio , vol.1 , Issue.4
    • Zhou, J.1    Deng, Y.2    Luo, F.3    He, Z.4    Tu, Q.5
  • 11
    • 0036634186 scopus 로고    scopus 로고
    • Transcriptional analysis of the xylose ABC transport operons in the thermophilic anaerobe Thermoanaerobacter ethanolicus
    • Jones CR, Ray M, Strobel HJ, (2002) Transcriptional analysis of the xylose ABC transport operons in the thermophilic anaerobe Thermoanaerobacter ethanolicus. Curr Microbiol 45: 54-62.
    • (2002) Curr Microbiol , vol.45 , pp. 54-62
    • Jones, C.R.1    Ray, M.2    Strobel, H.J.3
  • 12
    • 0030730280 scopus 로고    scopus 로고
    • Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator
    • Song S, Park C, (1997) Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator. J Bacteriol 179: 7025-7032.
    • (1997) J Bacteriol , vol.179 , pp. 7025-7032
    • Song, S.1    Park, C.2
  • 13
    • 0028944586 scopus 로고
    • Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster
    • Stojiljkovic I, Baumler AJ, Heffron F, (1995) Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster. J Bacteriol 177: 1357-1366.
    • (1995) J Bacteriol , vol.177 , pp. 1357-1366
    • Stojiljkovic, I.1    Baumler, A.J.2    Heffron, F.3
  • 14
    • 0026697024 scopus 로고
    • Regulation of Staphylococcus xylosus xylose utilization genes at the molecular level
    • Sizemore C, Wieland B, Gotz F, Hillen W, (1992) Regulation of Staphylococcus xylosus xylose utilization genes at the molecular level. J Bacteriol 174: 3042-3048.
    • (1992) J Bacteriol , vol.174 , pp. 3042-3048
    • Sizemore, C.1    Wieland, B.2    Gotz, F.3    Hillen, W.4
  • 15
    • 0036951961 scopus 로고    scopus 로고
    • Arginine catabolism by sourdough lactic acid bacteria: Purification and characterization of the arginine deiminase pathway enzymes from Lactobacillus sanfranciscensis CB1
    • De Angelis M, Mariotti L, Rossi J, Servili M, Fox PF, et al. (2002) Arginine catabolism by sourdough lactic acid bacteria: Purification and characterization of the arginine deiminase pathway enzymes from Lactobacillus sanfranciscensis CB1. Applied and Environmental Microbiology 68: 6193-6201.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 6193-6201
    • de Angelis, M.1    Mariotti, L.2    Rossi, J.3    Servili, M.4    Fox, P.F.5
  • 16
    • 38549168494 scopus 로고    scopus 로고
    • Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
    • Luo F, Yang Y, Zhong J, Gao H, Khan L, et al. (2007) Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory. Bioinformatics 8: 299.
    • (2007) Bioinformatics , vol.8 , pp. 299
    • Luo, F.1    Yang, Y.2    Zhong, J.3    Gao, H.4    Khan, L.5
  • 17
    • 77955657983 scopus 로고    scopus 로고
    • Thermoanaerobacter spp. control ethanol pathway via transcriptional regulation and versatility of key enzymes
    • Pei J, Zhou Q, Jiang Y, Le Y, Li H, et al. (2010) Thermoanaerobacter spp. control ethanol pathway via transcriptional regulation and versatility of key enzymes. Metab Eng 12: 420-428.
    • (2010) Metab Eng , vol.12 , pp. 420-428
    • Pei, J.1    Zhou, Q.2    Jiang, Y.3    Le, Y.4    Li, H.5
  • 18
    • 0028074589 scopus 로고
    • Purification of acetaldehyde dehydrogenase and alcohol dehydrogenases from Thermoanaerobacter ethanolicus 39E and characterization of the secondary-alcohol dehydrogenase (2 degrees Adh) as a bifunctional alcohol dehydrogenase-acetyl-CoA reductive thioesterase
    • Burdette D, Zeikus JG, (1994) Purification of acetaldehyde dehydrogenase and alcohol dehydrogenases from Thermoanaerobacter ethanolicus 39E and characterization of the secondary-alcohol dehydrogenase (2 degrees Adh) as a bifunctional alcohol dehydrogenase-acetyl-CoA reductive thioesterase. Biochem J 302 (Pt 1): 163-170.
    • (1994) Biochem J , vol.302 , Issue.Pt 1 , pp. 163-170
    • Burdette, D.1    Zeikus, J.G.2
  • 19
    • 78049506965 scopus 로고    scopus 로고
    • Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum
    • Servinsky MD, Kiel JT, Dupuy NF, Sund CJ, (2010) Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum. Microbiology 156: 3478-3491.
    • (2010) Microbiology , vol.156 , pp. 3478-3491
    • Servinsky, M.D.1    Kiel, J.T.2    Dupuy, N.F.3    Sund, C.J.4
  • 20
    • 52149107867 scopus 로고    scopus 로고
    • Origin of co-expression patterns in E. coli and S. cerevisiae emerging from reverse engineering algorithms
    • doi:10.1371/journal.pone.0002981
    • Zampieri M, Soranzo N, Bianchini D, Altafini C, (2008) Origin of co-expression patterns in E. coli and S. cerevisiae emerging from reverse engineering algorithms. PLoS ONE 3: e2981 doi:10.1371/journal.pone.0002981.
    • (2008) PLoS ONE , vol.3
    • Zampieri, M.1    Soranzo, N.2    Bianchini, D.3    Altafini, C.4
  • 23
  • 24
    • 67651241570 scopus 로고    scopus 로고
    • Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis
    • Feng X, Mouttaki H, Lin L, Huang R, Wu B, et al. (2009) Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Appl Environ Microbiol 75: 5001-5008.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5001-5008
    • Feng, X.1    Mouttaki, H.2    Lin, L.3    Huang, R.4    Wu, B.5
  • 25
    • 33845626641 scopus 로고    scopus 로고
    • How Phosphotransferase System-Related Protein Phosphorylation Regulates Carbohydrate Metabolism in Bacteria
    • Deutscher Josef, Francke Christof, Postma PW, (2006) How Phosphotransferase System-Related Protein Phosphorylation Regulates Carbohydrate Metabolism in Bacteria. Microbiol Mol Biol Rev 70: 939-1031.
    • (2006) Microbiol Mol Biol Rev , vol.70 , pp. 939-1031
    • Josef, D.1    Christof, F.2    Postma, P.W.3
  • 26
    • 0026502985 scopus 로고
    • Effect of Yeast Extract and Vitamin-B12 on Ethanol-Production from Cellulose by Clostridium-Thermocellum I-1-B
    • Sato KJ, Goto SG, Yonemura ST, Sekine KJ, Okuma EK, et al. (1992) Effect of Yeast Extract and Vitamin-B12 on Ethanol-Production from Cellulose by Clostridium-Thermocellum I-1-B. Appl Environ Microbiol 58: 734-736.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 734-736
    • Sato, K.J.1    Goto, S.G.2    Yonemura, S.T.3    Sekine, K.J.4    Okuma, E.K.5
  • 27
    • 0029658689 scopus 로고    scopus 로고
    • Cobalamin (coenzyme B12): synthesis and biological significance
    • Roth JR, Lawrence JG, Bobik TA, (1996) Cobalamin (coenzyme B12): synthesis and biological significance. Annu Rev Microbiol 50: 137-181.
    • (1996) Annu Rev Microbiol , vol.50 , pp. 137-181
    • Roth, J.R.1    Lawrence, J.G.2    Bobik, T.A.3
  • 28
    • 0032440064 scopus 로고    scopus 로고
    • The arcABDC gene cluster, encoding the arginine deiminase pathway of Bacillus licheniformis, and its activation by the arginine repressor argR
    • Maghnouj A, de Sousa Cabral TF, Stalon V, Vander Wauven C, (1998) The arcABDC gene cluster, encoding the arginine deiminase pathway of Bacillus licheniformis, and its activation by the arginine repressor argR. J Bacteriol 180: 6468-6475.
    • (1998) J Bacteriol , vol.180 , pp. 6468-6475
    • Maghnouj, A.1    de Sousa Cabral, T.F.2    Stalon, V.3    Vander Wauven, C.4
  • 29
    • 77956176226 scopus 로고    scopus 로고
    • Factors influencing cellulosome activity in Consolidated Bioprocessing of cellulosic ethanol
    • Xu C, Qin Y, Li Y, Ji Y, Huang J, et al. (2010) Factors influencing cellulosome activity in Consolidated Bioprocessing of cellulosic ethanol. Bioresour Technol 101: 9560-9569.
    • (2010) Bioresour Technol , vol.101 , pp. 9560-9569
    • Xu, C.1    Qin, Y.2    Li, Y.3    Ji, Y.4    Huang, J.5
  • 30
    • 77957292723 scopus 로고    scopus 로고
    • Identification and Overexpression of a Bifunctional Aldehyde/Alcohol Dehydrogenase Responsible for Ethanol Production in Thermoanaerobacter mathranii
    • Yao S, Mikkelsen MJ, (2010) Identification and Overexpression of a Bifunctional Aldehyde/Alcohol Dehydrogenase Responsible for Ethanol Production in Thermoanaerobacter mathranii. J Mol Microbiol Biotechnol 19: 123-133.
    • (2010) J Mol Microbiol Biotechnol , vol.19 , pp. 123-133
    • Yao, S.1    Mikkelsen, M.J.2
  • 31
  • 32
    • 77958524805 scopus 로고    scopus 로고
    • Ultrasound-mediated DNA transformation in thermophilic Gram-positive anaerobes
    • doi:10.1371/journal.pone.0012582
    • Lin L, Song H, Ji Y, He Z, Pu Y, et al. (2010) Ultrasound-mediated DNA transformation in thermophilic Gram-positive anaerobes. PLoS ONE 5: e12582 doi:10.1371/journal.pone.0012582.
    • (2010) PLoS ONE , vol.5
    • Lin, L.1    Song, H.2    Ji, Y.3    He, Z.4    Pu, Y.5
  • 33
    • 27244449595 scopus 로고    scopus 로고
    • Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
    • Li X, He Z, Zhou J, (2005) Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation. Nucleic Acids Res 33: 6114-6123.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6114-6123
    • Li, X.1    He, Z.2    Zhou, J.3
  • 34
    • 33745152320 scopus 로고    scopus 로고
    • Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis
    • He Q, Huang KH, He Z, Alm EJ, Fields MW, et al. (2006) Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl Environ Microbiol 72: 4370-4381.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4370-4381
    • He, Q.1    Huang, K.H.2    He, Z.3    Alm, E.J.4    Fields, M.W.5
  • 35
    • 0029031784 scopus 로고
    • Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov
    • Zhou J, Fries MR, Chee-Sanford JC, Tiedje JM, (1995) Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. Int J Syst Bacteriol 45: 500-506.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 500-506
    • Zhou, J.1    Fries, M.R.2    Chee-Sanford, J.C.3    Tiedje, J.M.4
  • 36
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • Newman ME, (2006) Modularity and community structure in networks. Proc Natl Acad Sci U S A 103: 8577-8582.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8577-8582
    • Newman, M.E.1
  • 38
    • 33644630612 scopus 로고    scopus 로고
    • Comparisons of dN/dS are time dependent for closely related bacterial genomes
    • Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, et al. (2006) Comparisons of dN/dS are time dependent for closely related bacterial genomes. J Theor Biol 239: 226-235.
    • (2006) J Theor Biol , vol.239 , pp. 226-235
    • Rocha, E.P.1    Smith, J.M.2    Hurst, L.D.3    Holden, M.T.4    Cooper, J.E.5


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