-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shaton, D., Davis, R.W. & Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470 (1995).
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shaton, D.2
Davis, R.W.3
Brown, P.O.4
-
2
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu, J. et al. MicroRNA expression profiles classify human cancers. Nature 435, 834-838 (2005).
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
-
3
-
-
0036173143
-
Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry
-
Perez, O.D. & Nolan, G.P. Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry. Nat. Biotechnol. 20, 155-162 (2002).
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 155-162
-
-
Perez, O.D.1
Nolan, G.P.2
-
4
-
-
29844441918
-
A high-performance liquid chromatography-tandem mass spectrometry method for quantitation of nitrogen-containing intracellular metabolites
-
Lu, W., Kimball, E. & Rabinowitz, J.D. A high-performance liquid chromatography-tandem mass spectrometry method for quantitation of nitrogen-containing intracellular metabolites. J. Am. Soc. Mass Spectrom. 17, 37-50 (2006).
-
(2006)
J. Am. Soc. Mass Spectrom
, vol.17
, pp. 37-50
-
-
Lu, W.1
Kimball, E.2
Rabinowitz, J.D.3
-
5
-
-
0036020655
-
Genetic network modeling
-
van Someren, E.P., Wessels, L.F., Backer, E. & Reinders, M.J. Genetic network modeling. Pharmacogenomics 3, 507-525 (2002).
-
(2002)
Pharmacogenomics
, vol.3
, pp. 507-525
-
-
van Someren, E.P.1
Wessels, L.F.2
Backer, E.3
Reinders, M.J.4
-
6
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
Friedman, N. Inferring cellular networks using probabilistic graphical models. Science 303, 799-805 (2004).
-
(2004)
Science
, vol.303
, pp. 799-805
-
-
Friedman, N.1
-
7
-
-
0033655775
-
Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
-
Butte, A.J. & Kohane, I.S. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac. Symp. Biocomput. 418-429 (2000).
-
(2000)
Pac. Symp. Biocomput
, vol.418-429
-
-
Butte, A.J.1
Kohane, I.S.2
-
8
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
Sachs, K., Perez, O., Pe'er, D., Lauffenburger, D.A. & Nolan, G.P. Causal protein-signaling networks derived from multiparameter single-cell data. Science 308, 523-529 (2005).
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
9
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
S
-
Margolin, A.A. et al. ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 7, S7 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 7
-
-
Margolin, A.A.1
-
10
-
-
0037687416
-
Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
-
Tegner, J., Yeung, M.K., Hasty, J. & Collins, J.J. Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling. Proc. Natl. Acad. Sci. USA 100, 5944-5949 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5944-5949
-
-
Tegner, J.1
Yeung, M.K.2
Hasty, J.3
Collins, J.J.4
-
11
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
Gardner, T.S., di Bernardo, D., Lorenz, D. & Collins, J.J. Inferring genetic networks and identifying compound mode of action via expression profiling. Science 301, 102-105 (2003).
-
(2003)
Science
, vol.301
, pp. 102-105
-
-
Gardner, T.S.1
di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
12
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal, E. et al. Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nat. Genet. 34, 166-176 (2003).
-
(2003)
Nat. Genet
, vol.34
, pp. 166-176
-
-
Segal, E.1
-
13
-
-
0035221560
-
Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
-
Hartemink, A.J., Gifford, D.K., Jaakkola, T.S. & Young, R.A. Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. Pac. Symp. Biocomput. 422-433 (2001).
-
(2001)
Pac. Symp. Biocomput
, vol.422-433
-
-
Hartemink, A.J.1
Gifford, D.K.2
Jaakkola, T.S.3
Young, R.A.4
-
14
-
-
3242882981
-
Chain functions and scoring functions in genetic networks
-
Gat-Viks, I. & Shamir, R. Chain functions and scoring functions in genetic networks. Bioinformatics 19 (Suppl. 1): I103-i117 (2003).
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Gat-Viks, I.1
Shamir, R.2
-
15
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker, T. et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292, 929-934 (2001).
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
-
16
-
-
16844376909
-
Reverse engineering of regulatory networks in human B cells
-
Basso, K. et al. Reverse engineering of regulatory networks in human B cells. Nat. Genet. 37, 382-390 (2005).
-
(2005)
Nat. Genet
, vol.37
, pp. 382-390
-
-
Basso, K.1
-
17
-
-
22844441552
-
Reverse engineering gene regulatory networks
-
Hartemink, A.J. Reverse engineering gene regulatory networks. Nat. Biotechnol. 23, 554-555 (2005).
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 554-555
-
-
Hartemink, A.J.1
-
18
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren, B. et al. Genome-wide location and function of DNA binding proteins. Science 290, 2306-2309 (2000).
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
-
20
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M. et al. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29 (2000).
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
21
-
-
0041853625
-
MATCH: A tool for searching transcription factor binding sites in DNA sequences
-
Ket, A.E. et al. MATCH: A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res. 31, 3576-3579 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Ket, A.E.1
-
22
-
-
0035803464
-
Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells
-
Klein, U. et al. Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells. J. Exp. Med. 194, 1625-1638 (2001).
-
(2001)
J. Exp. Med
, vol.194
, pp. 1625-1638
-
-
Klein, U.1
-
23
-
-
33644876958
-
TRANSFAC and its modute TRANSCompel: Transcriptional gene regulation in eukaryotes
-
Matys, V. et al. TRANSFAC and its modute TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res. 34, D108-D110 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
-
24
-
-
33644875782
-
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
-
Vlieghe, D. et al. A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res. 34, D95-D97 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Vlieghe, D.1
-
25
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon, P. et al. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
|