-
1
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabási AL, (2000) The large-scale organization of metabolic networks. Nature 407: 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabási, A.L.5
-
2
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási AL, Albert R, (1999) Emergence of scaling in random networks. Science 286: 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.L.1
Albert, R.2
-
3
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabási AL, Oltvai ZN, (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
4
-
-
27944470116
-
Preferential attachment in the evolution of metabolic networks
-
Light S, Kraulis P, Elofsson A, (2005) Preferential attachment in the evolution of metabolic networks. BMC Genomics 6: 159.
-
(2005)
BMC Genomics
, vol.6
, pp. 159
-
-
Light, S.1
Kraulis, P.2
Elofsson, A.3
-
5
-
-
0033764169
-
The small world of metabolism
-
Fell DA, Wagner A, (2000) The small world of metabolism. Nat Biotechnol 18: 1121-1122.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1121-1122
-
-
Fell, D.A.1
Wagner, A.2
-
6
-
-
33845723726
-
Chemoinformatics: past, present, and future
-
Chen WL, (2006) Chemoinformatics: past, present, and future. J Chem Inf Model 46: 2230-2255.
-
(2006)
J Chem Inf Model
, vol.46
, pp. 2230-2255
-
-
Chen, W.L.1
-
7
-
-
33845780212
-
Basic overview of chemoinformatics
-
Engel T, (2006) Basic overview of chemoinformatics. J Chem Inf Model 46: 2267-2277.
-
(2006)
J Chem Inf Model
, vol.46
, pp. 2267-2277
-
-
Engel, T.1
-
8
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, et al. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol 5: 593-599.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
van Dien, S.J.5
-
9
-
-
36749067297
-
Cyclic changes in metabolic state during the life of a yeast cell
-
Tu BP, Mohler RE, Liu JC, Dombek KM, Young ET, et al. (2007) Cyclic changes in metabolic state during the life of a yeast cell. Proc Natl Acad Sci U S A 104: 16886-16891.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 16886-16891
-
-
Tu, B.P.1
Mohler, R.E.2
Liu, J.C.3
Dombek, K.M.4
Young, E.T.5
-
10
-
-
42049108914
-
Protein abundance profiling of the Escherichia coli cytosol
-
Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9: 102.
-
(2008)
BMC Genomics
, vol.9
, pp. 102
-
-
Ishihama, Y.1
Schmidt, T.2
Rappsilber, J.3
Mann, M.4
Hartl, F.U.5
-
11
-
-
79952744659
-
Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions
-
Heo M, Maslov S, Shakhnovich E, (2011) Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions. Proc Natl Acad Sci U S A 108: 4258-4263.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4258-4263
-
-
Heo, M.1
Maslov, S.2
Shakhnovich, E.3
-
12
-
-
73449086273
-
How does oxygen rise drive evolution? Clues from oxygen-dependent biosynthesis of nuclear receptor ligands
-
Jiang YY, Kong DX, Qin T, Zhang HY, (2010) How does oxygen rise drive evolution? Clues from oxygen-dependent biosynthesis of nuclear receptor ligands. Biochem Biophys Res Commun 391: 1158-1160.
-
(2010)
Biochem Biophys Res Commun
, vol.391
, pp. 1158-1160
-
-
Jiang, Y.Y.1
Kong, D.X.2
Qin, T.3
Zhang, H.Y.4
-
13
-
-
24144461888
-
Seeking the solution
-
Ball P, (2005) Seeking the solution. Nature 436: 1084-1085.
-
(2005)
Nature
, vol.436
, pp. 1084-1085
-
-
Ball, P.1
-
15
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I, Palsson BØ, (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nature Protoc 5: 93-121.
-
(2010)
Nature Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.Ø.2
-
16
-
-
33745433792
-
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
-
Kümmel A, Panke S, Heinemann M, (2006) Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Mol Syst Biol 2: 2006.0034.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 34
-
-
Kümmel, A.1
Panke, S.2
Heinemann, M.3
-
17
-
-
4043137356
-
A tutorial on support vector regression
-
Smola AJ, Schölkopf B, (2004) A tutorial on support vector regression. Stat Comput 14: 199-222.
-
(2004)
Stat Comput
, vol.14
, pp. 199-222
-
-
Smola, A.J.1
Schölkopf, B.2
-
18
-
-
0036081122
-
LIGAND: database of chemical compounds and reactions in biological pathways
-
Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M, (2002) LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res 30: 402-404.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 402-404
-
-
Goto, S.1
Okuno, Y.2
Hattori, M.3
Nishioka, T.4
Kanehisa, M.5
-
19
-
-
34548425218
-
Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks
-
Huss M, Holme P, (2007) Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks. IET Syst Biol 1: 280-285.
-
(2007)
IET Syst Biol
, vol.1
, pp. 280-285
-
-
Huss, M.1
Holme, P.2
-
20
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma H, Zeng AP, (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19: 270-277.
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.1
Zeng, A.P.2
-
21
-
-
58149179979
-
EcoCyc: A comprehensive view of Escherichia coli biology
-
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, et al. (2009) EcoCyc: A comprehensive view of Escherichia coli biology. Nucleic Acids Res 37: D464-D470.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keseler, I.M.1
Bonavides-Martínez, C.2
Collado-Vides, J.3
Gama-Castro, S.4
Gunsalus, R.P.5
-
22
-
-
53749085229
-
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
-
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, et al. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol 26: 1155-1160.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1155-1160
-
-
Herrgård, M.J.1
Swainston, N.2
Dobson, P.3
Dunn, W.B.4
Arga, K.Y.5
-
23
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
24
-
-
38349164409
-
Computing topological parameters of biological networks
-
Assenov Y, Ramírez F, Schelhorn SE, Lengauer T, Albrecht M, (2008) Computing topological parameters of biological networks. Bioinformatics 24: 282-284.
-
(2008)
Bioinformatics
, vol.24
, pp. 282-284
-
-
Assenov, Y.1
Ramírez, F.2
Schelhorn, S.E.3
Lengauer, T.4
Albrecht, M.5
-
25
-
-
28944434076
-
Protein function, connectivity, and duplicability in yeast
-
Prachumwat A, Li WH, (2006) Protein function, connectivity, and duplicability in yeast. Mol Biol Evol 23: 30-39.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 30-39
-
-
Prachumwat, A.1
Li, W.H.2
-
26
-
-
33645211903
-
The effect of oxygen on biochemical networks and the evolution of complex life
-
Raymond J, Segrè D, (2006) The effect of oxygen on biochemical networks and the evolution of complex life. Science 311: 1764-1767.
-
(2006)
Science
, vol.311
, pp. 1764-1767
-
-
Raymond, J.1
Segrè, D.2
|