메뉴 건너뛰기




Volumn 6, Issue , 2005, Pages

Preferential attachment in the evolution of metabolic networks

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; ESCHERICHIA COLI PROTEIN; ISOPROTEIN;

EID: 27944470116     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-159     Document Type: Article
Times cited : (64)

References (35)
  • 1
    • 0036306663 scopus 로고    scopus 로고
    • Homology, pathway distance and chromosomal localisation of the small molecule metabolism enzymes in Escherichia coli
    • Rison SC, Teichmann SA and Thornton JM: Homology, pathway distance and chromosomal localisation of the small molecule metabolism enzymes in Escherichia coli. J Mol Biol 2002, 318: 911-932.
    • (2002) J. Mol. Biol. , vol.318 , pp. 911-932
    • Rison, S.C.1    Teichmann, S.A.2    Thornton, J.M.3
  • 2
    • 0036303685 scopus 로고    scopus 로고
    • Evolution of enzymes in metabolism: A network perspective
    • Alves R, Chaleil RA and Sternberg MJ: Evolution of enzymes in metabolism: a network perspective. J Mol Biol 2002, 320: 751-770.
    • (2002) J. Mol. Biol. , vol.320 , pp. 751-770
    • Alves, R.1    Chaleil, R.A.2    Sternberg, M.J.3
  • 3
    • 2942604422 scopus 로고    scopus 로고
    • Network analysis of metabolic enzyme evolution in Escherichia coli
    • Light S and Kraulis P: Network analysis of metabolic enzyme evolution in Escherichia coli. BMC Bioinformatics 2004, 5.
    • BMC Bioinformatics , vol.2004 , pp. 5
    • Light, S.1    Kraulis, P.2
  • 4
    • 0017272554 scopus 로고
    • Enzyme recruitment in evolution of new function
    • Jensen RA: Enzyme recruitment in evolution of new function. Annu Rev Microbiol 1976, 30: 409-425.
    • (1976) Annu. Rev. Microbiol. , vol.30 , pp. 409-425
    • Jensen, R.A.1
  • 5
    • 0001260894 scopus 로고
    • On the evolution of biochemical syntheses
    • Horowitz NH: On the evolution of biochemical syntheses. Proc Natl Acad Sci USA 1945, 31: 153-157.
    • (1945) Proc. Natl. Acad. Sci. USA , vol.31 , pp. 153-157
    • Horowitz, N.H.1
  • 8
    • 0034887573 scopus 로고    scopus 로고
    • Scale-free behavior in protein domain networks
    • Wuchty S: Scale-free behavior in protein domain networks. Mol Biol Evol 2001, 18: 1694-1702.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1694-1702
    • Wuchty, S.1
  • 9
    • 1242319556 scopus 로고    scopus 로고
    • The metabolic world of Escherichia coli is not small
    • Arita M: The metabolic world of Escherichia coli is not small. Proc Natl Acad Sci U S A. 2004, 101: 1543-1547.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 1543-1547
    • Arita, M.1
  • 10
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • Albert R, Jeong H and Barabasi A-L: Error and attack tolerance of complex networks. Nature 2000, 406: 378-382.
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.-L.3
  • 12
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in metabolic networks
    • Barabasi A-L and Albert R: Emergence of scaling in metabolic networks. Science 1999, 286: 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.-L.1    Albert, R.2
  • 13
    • 0035798398 scopus 로고    scopus 로고
    • Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
    • Qian J, Luscombe NM and Gerstein M: Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model. J Mol Biol 2001, 313: 673-681.
    • (2001) J. Mol. Biol. , vol.313 , pp. 673-681
    • Qian, J.1    Luscombe, N.M.2    Gerstein, M.3
  • 14
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi A-L and Oltvai ZN: Network biology: Understanding the cell's functional organization. Nat Rev Genet 2004, 5: 101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 15
    • 0642285840 scopus 로고    scopus 로고
    • Preferential attachment in Protein Network Evolution
    • Eisenberg E and Levanon EY: Preferential attachment in Protein Network Evolution. Phys Rev Lett 2003, 91: 138701.
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 138701
    • Eisenberg, E.1    Levanon, E.Y.2
  • 16
    • 3042593155 scopus 로고    scopus 로고
    • Functional Evolution of the Yeast Protein Interaction Network
    • Kunin V, Pereira-Leal JB and Ouzounis CA: Functional Evolution of the Yeast Protein Interaction Network. Mol Biol Evol 2004, 21: 1171-1176.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1171-1176
    • Kunin, V.1    Pereira-Leal, J.B.2    Ouzounis, C.A.3
  • 20
    • 0038486918 scopus 로고    scopus 로고
    • The balance of driving forces during genome evolution in prokaryotes
    • Kunin V and Ouzounis CA: The balance of driving forces during genome evolution in prokaryotes. Genome Res. 2003, 13: 1589-1594.
    • (2003) Genome Res. , vol.13 , pp. 1589-1594
    • Kunin, V.1    Ouzounis, C.A.2
  • 21
    • 0032777154 scopus 로고    scopus 로고
    • Insights into the evolutionary process of genome degradation
    • Andersson JO and Andersson SG: Insights into the evolutionary process of genome degradation. Curr Opin Genet Dev 1999, 9: 664-671.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 664-671
    • Andersson, J.O.1    Andersson, S.G.2
  • 23
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: The evolution of archaeal and proteobacterial gene content
    • Snel B, Bork P and Huynen MA: Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res 2002, 12: 17-25.
    • (2002) Genome Res. , vol.12 , pp. 17-25
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 24
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: Rates of change and exchange
    • Lawrence JG and Ochman H: Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 1997, 44: 383-397.
    • (1997) J. Mol. Evol. , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 25
  • 30
    • 2942624207 scopus 로고    scopus 로고
    • Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
    • Papp B, Pal C, and Hurst LD: Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature 2004, 429: 661-664.
    • (2004) Nature , vol.429 , pp. 661-664
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 31
    • 0033168449 scopus 로고    scopus 로고
    • Variation and evolution of the citric-acid cycle: A genomic perspective
    • Huynen MA, Dandekar T, and Bork P: Variation and evolution of the citric-acid cycle: a genomic perspective. Trends Microbiol 1999, 7: 281-291.
    • (1999) Trends Microbiol. , vol.7 , pp. 281-291
    • Huynen, M.A.1    Dandekar, T.2    Bork, P.3
  • 32
    • 0032478498 scopus 로고    scopus 로고
    • Microbial genome analyses: Global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities
    • Paulsen IT, Sliwinski MK and Saier MHJ: Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities. J Mol Biol 1998, 277: 573-592.
    • (1998) J. Mol. Biol. , vol.277 , pp. 573-592
    • Paulsen, I.T.1    Sliwinski, M.K.2    Saier, M.H.J.3
  • 34
    • 0037316239 scopus 로고    scopus 로고
    • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
    • Ma H and Zeng AP: Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 2003, 19: 270-277.
    • (2003) Bioinformatics , vol.19 , pp. 270-277
    • Ma, H.1    Zeng, A.P.2
  • 35
    • 17544367678 scopus 로고    scopus 로고
    • Convergent evolution of domain architectures (is rare)
    • Gough J: Convergent evolution of domain architectures (is rare). Bioinformatics 2005, 21: 1464-1471.
    • (2005) Bioinformatics , vol.21 , pp. 1464-1471
    • Gough, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.