Parallel pairwise statistical significance estimation of local sequence alignment using Message Passing Interface library

Concurrency and Computation: Practice and Experience

Volumn 23, Issue 17, 2011, Pages 2269-2279

  Agrawal, Ankit ^a   Misra, Sanchit ^a   Honbo, Daniel ^a   Choudhary, Alok ^a  

^a Northwestern University   (United States)

Author keywords

homologs; MPI; non conservative pairwise statistical significance; pairwise statistical significance; parallel computing; position specific substitution matrix; sequence alignment; sequence specific substitution matrix

Indexed keywords

MATRIX ALGEBRA; MESSAGE PASSING; PARALLEL PROCESSING SYSTEMS;

DATABASE STATISTICAL SIGNIFICANCE; HOMOLOGS; LOCAL SEQUENCE ALIGNMENTS; MESSAGE PASSING INTERFACE LIBRARIES; PAIRWISE STATISTICAL SIGNIFICANCE; PARALLELIZATION TECHNIQUES; SEQUENCE ALIGNMENTS; SUBSTITUTION MATRIX;

STATISTICS;

EID: 80054957901     PISSN: 15320626     EISSN: 15320634     Source Type: Journal    
DOI: 10.1002/cpe.1798     Document Type: Article

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