Efficient pairwise statistical significance estimation for local sequence alignment using GPU

2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011

Volumn , Issue , 2011, Pages 226-231

  Zhang, Yuhong ^a,b   Misra, Sanchit ^b   Honbo, Daniel ^b   Agrawal, Ankit ^b   Liao, Wei Keng ^b   Choudhary, Alok ^b  

^a UNIVERSITY OF ELECTRONIC SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b Northwestern University   (United States)

Author keywords

GPU; Pairwise sequence alignment; Statistical significance

Indexed keywords

BIOINFORMATICS APPLICATIONS; DATA ACCESS; DATA INTENSIVE; ESTIMATION ALGORITHM; GPU; GRAPHICS PROCESSING UNITS; LOCAL SEQUENCES; MEMORY ACCESS; NUMBER OF THREADS; OPTIMIZED IMPLEMENTATION; PAIRWISE SEQUENCE ALIGNMENT; PAIRWISE STATISTICAL SIGNIFICANCE; PERFORMANCE BOTTLENECKS; PERFORMANCE EVALUATION; SEQUENCE DATA; STATISTICAL SIGNIFICANCE;

ALGORITHMS; ALIGNMENT; BIOINFORMATICS; ESTIMATION; MEDICAL COMPUTING; PROGRAM PROCESSORS;

STATISTICS;

EID: 79953827249     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICCABS.2011.5729885     Document Type: Conference Paper

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