[15] Effective protein sequence comparison

Methods in Enzymology

Volumn 266, Issue , 1996, Pages 227-256

  Pearson, William R ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; DATA BASE; DNA SEQUENCE; INFORMATION PROCESSING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STATISTICS;

AMINO ACID SEQUENCE; ANIMALS; CALMODULIN; DATABASES, FACTUAL; DROSOPHILA; GLUTATHIONE TRANSFERASE; HUMANS; ISOENZYMES; MICE; MOLECULAR SEQUENCE DATA; PEPTIDE ELONGATION FACTOR 1; PEPTIDE ELONGATION FACTORS; PROBABILITY; PROTEINS; RATS; REGRESSION ANALYSIS; SENSITIVITY AND SPECIFICITY; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0029933671     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(96)66017-0     Document Type: Article

References (33)

1. S. F. Altschul, M. S. Boguski, W. Gish, and J. C. Wootton, Nat. Genet. 6, 119 (1994).
2. The number of sequences in GenBank rose by 50% from Feb. 1995 to June 1995 because of large-scale expressed sequence tag (EST) sequencing projects.
3. A. Bairoch and B. Boechmann, Nucleic Acids Res. 19(Suppl.), 2247 (1991).
4. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, J. Mol. Biol. 215, 403 (1990).
5. T. F. Smith and M. S. Waterman, J. Mol. Biol. 147, 195 (1981).
6. S. Karlin and S. F. Altschul, Proc. Natl. Acad. Sci. U.S.A. 87, 2264 (1990).
7. J. F. Collins, A. F. W. Coulson, and A. Lyall, Comput. Appl. Biosci. 4, 67 (1988).
8. R. Mott, Bull. Math. Biol. 54, 59 (1992).
9. W. R. Pearson, Protein Sci. 4, 1145 (1995).
10. R. M. Armstrong, Adv. Enzymol. 69, 1 (1994).
11. E. V. Koonin, A. R. Mushegian, R. L. Tatusov, S. F. Altshul, S. H. Bryant, P. Bork, and A. Valencia, Protein Sci. 3, 2045 (1994).
12. B. Mannervik and U. H. Danielson, Crit. Rev. Biochem. 23, 2831 (1988).
13. R. F. Doolittle, D. F. Feng, M. S. Johnson, and M. A. McClure, Cold Spring Harbor Symp. Quant. Biol. 51, 447 (1986).
14. W. R. Pearson and W. Miller, this series, Vol. 210, p. 575.
15. W. R. Pearson and D. J. Lipman, Proc. Natl. Acad. Sci. U.S.A. 85, 2444 (1988).
16. O. Gotoh, J. Mol. Biol. 162, 705 (1982).
17. M. S. Waterman, Bull. Math. Biol. 56, 743 (1994).
18. D. J. Lipman and W. R. Pearson, Science 227, 1435 (1985).
19. W. R. Pearson, this series, Vol. 183, p. 63.
20. S. Karlin, P. Bucher, V. Brendel, and S. F. Altschul, Annu. Rev. Biophys. Biophys. Chem. 20, 175 (1991).
21. S. Karlin and S. F. Altschul, Proc. Natl. Acad. Sci. U.S.A. 90, 5873 (1993).
22. M. Dayhoff, R. M. Schwartz, and B. C. Orcutt, in "Atlas of Protein Sequence and Structure" (M. Dayhoff, ed.), Vol. 5, Suppl. 3, p. 345. National Biomedical Research Foundation, Silver Spring, Maryland, 1978.
23. D. T. Jones, W. R. Taylor, and J. M. Thornton, Comput. Appl. Biosci. 8, 275 (1992).
24. S. Henikoff and J. G. Henikoff, Proc. Natl. Acad. Sci. U.S.A. 89, 10915 (1992).
25. S. Henikoff and J. G. Henikoff, Proteins 17, 49 (1993).
26. S. F. Altschul, J. Mol. Biol. 219, 555 (1991).
27. W. C. Barker, D. G. George, and L. T. Hunt, this series, Vol. 183, p. 31.
28. A. Geist, A. Beguelin, J. Dongarra, W. Jiang, R. Mancheck, and V. Sunderam, "PVM 3 User's Guide and Reference Manual," Technical Report ORNL/TM-12187, 1993.
29. M. S. Waterman and M. Eggert, J. Mol. Biol. 197, 723 (1987).
30. X. Huang and W. Miller, Adv. Appl. Math. 12, 337 (1991).
31. K.-M. Chao, R. C. Hardison, and W. Miller, J. Comput. Biol. 1, 271 (1994).
32. D. Benson, M. Boguski, D. J. Lipman, and J. Ostell, Nucleic Acids Res. 22, 3441 (1994).
33. -E; for E < 0.1, P ≈ E.