메뉴 건너뛰기




Volumn 60, Issue 6, 2011, Pages 826-832

Euclidean nature of phylogenetic distance matrices

Author keywords

Biodiversity estimation; coevolution; cospeciation; functional diversity; multivariate analysis; phylogeny

Indexed keywords

ARTICLE; CLASSIFICATION; COMPUTER SIMULATION; METHODOLOGY; PHYLOGENY;

EID: 80054943881     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syr066     Document Type: Article
Times cited : (34)

References (36)
  • 1
    • 79957548902 scopus 로고    scopus 로고
    • Analysis of comparative data with hierarchical autocorrelation
    • Ané C. 2008. Analysis of comparative data with hierarchical autocorrelation. Ann. Appl. Stat. 2:1078-1102.
    • (2008) Ann. Appl. Stat , vol.2 , pp. 1078-1102
    • Ané, C.1
  • 2
    • 0001861066 scopus 로고
    • Some notes on ordered random intervals
    • Barton D.E., David F.N. 1956. Some notes on ordered random intervals. J. R. Stat. Soc. B. 18:79-94.
    • (1956) J. R. Stat. Soc. B , vol.18 , pp. 79-94
    • Barton, D.E.1    David, F.N.2
  • 3
    • 0036844685 scopus 로고    scopus 로고
    • Tempo and mode in evolution: Phylogenetic inertia, adaptation and comparative methods
    • DOI 10.1046/j.1420-9101.2002.00472.x
    • Blomberg S.P., Garland T. 2002. Tempo and mode in evolution: phylo-genetic inertia, adaptation and comparative methods. J. Evol. Biol. 15:899-910. (Pubitemid 35326122)
    • (2002) Journal of Evolutionary Biology , vol.15 , Issue.6 , pp. 899-910
    • Blomberg, S.P.1    Garland Jr., T.2
  • 4
    • 0038325772 scopus 로고    scopus 로고
    • Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
    • Blomberg S.P., Garland T., Ives A.R. 2003. Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution. 57:717-745. (Pubitemid 36579712)
    • (2003) Evolution , vol.57 , Issue.4 , pp. 717-745
    • Blomberg, S.P.1    Garland Jr., T.2    Ives, A.R.3
  • 5
    • 27744460374 scopus 로고    scopus 로고
    • Rao's quadratic entropy as a measure of functional diversity based on multiple traits
    • DOI 10.1658/1100-9233(2005)16[533:RQEAAM]2.0.CO;2
    • Botta-Dukát Z. 2005. Rao's quadratic entropy as a measure of functional diversity based on multiple traits. J. Veg. Sci. 16:533-540. (Pubitemid 41626164)
    • (2005) Journal of Vegetation Science , vol.16 , Issue.5 , pp. 533-540
    • Botta-Dukat, Z.1
  • 6
    • 10044232061 scopus 로고
    • The analytical solution of the additive constant problem
    • Cailliez F. 1983. The analytical solution of the additive constant problem. Psychometrika. 48:305-310.
    • (1983) Psychometrika , vol.48 , pp. 305-310
    • Cailliez, F.1
  • 7
    • 20444406724 scopus 로고    scopus 로고
    • The ade4 package-I-one-table methods
    • Chessel D., Dufour A.B., Thioulouse J. 2004. The ade4 package-I-one-table methods. R News. 4:5-10.
    • (2004) R News , vol.4 , pp. 5-10
    • Chessel, D.1    Dufour, A.B.2    Thioulouse, J.3
  • 8
    • 0022210656 scopus 로고
    • The quantitative assessment of phylogenetic constraints in comparative analyses: sexual dimorphism in body weight among primates
    • Cheverud J.M., Dow M.M., Leutenegger W. 1985. The quantitative assessment of phylogenetic constraints in comparative analyses: sexual dimorphism in body weight among primates. Evolution. 39:1335-1351. (Pubitemid 17247923)
    • (1985) Evolution , vol.39 , Issue.6 , pp. 1335-1351
    • Cheverud, J.M.1    Dow, M.M.2    Leutenegger, W.3
  • 9
    • 0345094916 scopus 로고    scopus 로고
    • Quantifying phylogenetically structured environmental variation
    • Desdevises Y., Legendre P., Azouzi L., Morand S. 2003. Quantifying phylogenetically structured environmental variation. Evolution. 57:2647-2652. (Pubitemid 37502567)
    • (2003) Evolution , vol.57 , Issue.11 , pp. 2647-2652
    • Desdevises, Y.1    Legendre, P.2    Azouzi, L.3    Morand, S.4
  • 10
    • 0036958835 scopus 로고    scopus 로고
    • Coevolution between Lamellodiscus (Monogenea: Diplectanidae) and Sparidae (Teleostei): The study of a complex host-parasite system
    • Desdevises Y., Morand S., Jousson O., Legendre P. 2002. Coevolution between Lamellodiscus (monogena: Diplectanidae) and Sparidae (Teleostei): the study of a complex host-parasite system. Evolution. 56:2459-2471. (Pubitemid 36108561)
    • (2002) Evolution , vol.56 , Issue.12 , pp. 2459-2471
    • Desdevises, Y.1    Morand, S.2    Jousson, O.3    Legendre, P.4
  • 11
    • 3643135272 scopus 로고    scopus 로고
    • An eigenvector method for estimating phylogenetic inertia
    • Diniz-Filho J.A.F., Sant'Ana C.E., De R., Bini L.M. 1998. An eigenvector method for estimating phylogenetic inertia. Evolution. 52:1247-1262. (Pubitemid 28537236)
    • (1998) Evolution , vol.52 , Issue.5 , pp. 1247-1262
    • Diniz-Filho, J.A.F.1    De SanT'Ana, C.E.R.2    Bini, L.M.3
  • 12
    • 37649004826 scopus 로고    scopus 로고
    • The ade4 package-II: Two-table and K-table methods
    • Dray S., Dufour A.B., Chessel D. 2007. The ade4 package-II: two-table and K-table methods. R. News. 7:47-52.
    • (2007) R. News , vol.7 , pp. 47-52
    • Dray, S.1    Dufour, A.B.2    Chessel, D.3
  • 13
    • 0022203256 scopus 로고
    • Phylogenies and the comparative Method
    • Felsenstein J. 1985. Phylogenies and the comparative Method. Am. Nat. 125:1.
    • (1985) Am. Nat , vol.125 , pp. 1
    • Felsenstein, J.1
  • 14
    • 43949115169 scopus 로고    scopus 로고
    • Comparative methods with sampling error and within-species variation: Contrasts revisited and revised
    • DOI 10.1086/587525
    • Felsenstein, J. 2008. Comparative methods with sampling error and within-species variation: contrasts revisited and revised. Am. Nat. 171:713-725. (Pubitemid 351706501)
    • (2008) American Naturalist , vol.171 , Issue.6 , pp. 713-725
    • Felsenstein, J.1
  • 15
    • 0001783722 scopus 로고
    • Etude de la décroissance des valeurs propres dans une analyse en composantes principales: comparaison avec le modèle du bâton brisé
    • Frontier S. 1976. Etude de la décroissance des valeurs propres dans une analyse en composantes principales: comparaison avec le modèle du bâton brisé. J. Exp. Mar. Biol. Ecol. 25:67-75.
    • (1976) J. Exp. Mar. Biol. Ecol , vol.25 , pp. 67-75
    • Frontier, S.1
  • 16
    • 0034001912 scopus 로고    scopus 로고
    • Using the past to predict the present: Con-fdence intervals for regression equations in phylogenetic comparative methods
    • Garland T.J., Ives A.R. 2000. Using the past to predict the present: con-fdence intervals for regression equations in phylogenetic comparative methods. Am. Nat. 155:346-364.
    • (2000) Am. Nat , vol.155 , pp. 346-364
    • Garland, T.J.1    Ives, A.R.2
  • 17
    • 0000071395 scopus 로고
    • Some distance properties of latent root and vector methods used in multivariate analysis
    • Gower J.C. 1966. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika. 53:325-338.
    • (1966) Biometrika , vol.53 , pp. 325-338
    • Gower, J.C.1
  • 18
    • 0009245040 scopus 로고
    • Euclidean distance geometry
    • Gower J.C. 1982. Euclidean distance geometry. Math. Scientist. 7: 1-14.
    • (1982) Math. Scientist , vol.7 , pp. 1-14
    • Gower, J.C.1
  • 19
    • 33747044600 scopus 로고
    • Metric and Euclidean properties of dissimilarity coefficients
    • Gower J.C., Legendre P. 1986. Metric and Euclidean properties of dissimilarity coefficients. J. Classif. 3:5-48.
    • (1986) J. Classif , vol.3 , pp. 5-48
    • Gower, J.C.1    Legendre, P.2
  • 21
    • 0030303753 scopus 로고    scopus 로고
    • Statistics and partitioning of species diversity, and similarity among multiple communities
    • Lande R. 1996. Statistics and partitioning of species diversity, and similarity among multiple communities. Oikos. 76:5-13.
    • (1996) Oikos , vol.76 , pp. 5-13
    • Lande, R.1
  • 23
    • 0036554493 scopus 로고    scopus 로고
    • A statistical test for host-parasite coevolution
    • DOI 10.1080/10635150252899734
    • Legendre P., Desdevises Y., Bazin E. 2002. A statistical test for host-parasite coevolution. Syst. Biol. 51:217-234. (Pubitemid 35180705)
    • (2002) Systematic Biology , vol.51 , Issue.2 , pp. 217-234
    • Legendre, P.1    Desdevises, Y.2    Bazin, E.3
  • 24
    • 0026293261 scopus 로고
    • Methods for the analysis of comparative data in evolutionary biology
    • Lynch M. 1991. Methods for the analysis of comparative data in evolutionary biology. Evolution. 45:1065-1080.
    • (1991) Evolution , vol.45 , pp. 1065-1080
    • Lynch, M.1
  • 25
    • 0029843512 scopus 로고    scopus 로고
    • Phylogenies, spatial autoregression, and the comparative method: A computer simulation test
    • Martins E.P. 1996. Phylogenies, spatial autoregression, and the comparative method: a computer simulation test. Evolution. 50:1750-1765. (Pubitemid 26393031)
    • (1996) Evolution , vol.50 , Issue.5 , pp. 1750-1765
    • Martins, E.P.1
  • 26
    • 0030619995 scopus 로고    scopus 로고
    • Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the anlaysis of interspecific data
    • Martins E.P., Hansen T.F. 1997. Phylogenies and the comparative method: a general approach to incorporating phylogenetic information into the anlaysis of interspecific data. Am. Nat. 149: 646-667.
    • (1997) Am. Nat , vol.149 , pp. 646-667
    • Martins, E.P.1    Hansen, T.F.2
  • 27
    • 0036957240 scopus 로고    scopus 로고
    • Phylogeny shape and the phylogenetic comparative method
    • Martins E.P., Housworth E.A. 2002. Phylogeny shape and the phylo-genetic comparative method. Syst. Biol. 51:873-880. (Pubitemid 36107978)
    • (2002) Systematic Biology , vol.51 , Issue.6 , pp. 873-880
    • Martins, E.P.1    Housworth, E.A.2
  • 28
    • 33747056328 scopus 로고    scopus 로고
    • Testing for different rates of continuous trait evolution using likelihood
    • O'Meara B.C., Ané C., Sanderson M.J., Wainwright P.C. 2006. Testing for different rates of continuous trait evolution using likelihood. Evolution. 60:922-933.
    • (2006) Evolution , vol.60 , pp. 922-933
    • O'Meara, B.C.1    Ané, C.2    Sanderson, M.J.3    Wainwright, P.C.4
  • 29
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel M. 1999. Inferring the historical patterns of biological evolution. Nature. 401:877-884.
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.1
  • 30
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • DOI 10.1093/bioinformatics/btg412
    • Paradis E., Claude J., Strimmer K. 2004. APE: analyses of phylogenet-ics and evolution in R language. Bioinformatics. 20:289-290. (Pubitemid 38195693)
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 31
    • 20444389407 scopus 로고    scopus 로고
    • Is the originality of a species measurable?
    • DOI 10.1111/j.1461-0248.2005.00752.x
    • Pavoine S., Ollier S., Dufour A.-B. 2005. Is the originality of a species measurable? Ecol. Lett. 8:579-586. (Pubitemid 40802024)
    • (2005) Ecology Letters , vol.8 , Issue.6 , pp. 579-586
    • Pavoine, S.1    Ollier, S.2    Dufour, A.-B.3
  • 32
    • 18844397307 scopus 로고    scopus 로고
    • Measuring diversity from dissimilarities with Rao's quadratic entropy: Are any dissimilarities suitable?
    • DOI 10.1016/j.tpb.2005.01.004, PII S0040580905000183
    • Pavoine S., Ollier S., Pontier D. 2005. Measuring diversity from dissimilarities with Raos quadratic entropy: are any dissimilarities suitable? Theor. Popul. Biol. 67:231-239. (Pubitemid 40678711)
    • (2005) Theoretical Population Biology , vol.67 , Issue.4 , pp. 231-239
    • Pavoine, S.1    Ollier, S.2    Pontier, D.3
  • 33
    • 12044252802 scopus 로고
    • Polytomies in comparative analyses of continuous characters
    • Purvis A., Garland T.J. 1993. Polytomies in comparative analyses of continuous characters. Syst. Biol. 42:569-575.
    • (1993) Syst. Biol , vol.42 , pp. 569-575
    • Purvis, A.1    Garland, T.J.2
  • 34
    • 0003143622 scopus 로고
    • Diversity and dissimilarity coefficients: A unifed approach
    • Rao. C.R. 1982. Diversity and dissimilarity coefficients: a unifed approach. Theor. Popul. Biol. 21:24-43.
    • (1982) Theor. Popul. Biol , vol.21 , pp. 24-43
    • Rao, C.R.1
  • 35
    • 0035685482 scopus 로고    scopus 로고
    • Comparative methods for the analysis of continuous variables: Geometric interpretations
    • Rohlf F.J. 2001. Comparative methods for the analysis of continuous variables: geometric interpretations. Evolution. 55:2143-2160. (Pubitemid 34049746)
    • (2001) Evolution , vol.55 , Issue.11 , pp. 2143-2160
    • Rohlf, F.J.1
  • 36
    • 36149005118 scopus 로고
    • On the theory of the Brownian motion
    • Uhlenbeck G.E., Ornstein L.S. 1930. On the theory of the Brownian motion. Phys. Rev. 36:823-841.
    • (1930) Phys. Rev , vol.36 , pp. 823-841
    • Uhlenbeck, G.E.1    Ornstein, L.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.