Quantifying phylogenetically structured environmental variation

Evolution

Volumn 57, Issue 11, 2003, Pages 2647-2652

  Desdevises, Yves ^a   Legendre, Pierre ^b   Azouzi, Lamia ^c   Morand, Serge ^d  

^a SORBONNE UNIVERSITÉ   (France)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

^c UNIVERSITÉ DE PERPIGNAN   (France)

^d CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

Author keywords

Comparative analysis; Phylogenetic correction; Phylogenetic niche conservatism; Phylogenetically structured environmental variation; Variation partitioning

Indexed keywords

BODY MASS; PHYLOGENETICS; PHYLOGENY;

ANIMALIA; MAMMALIA;

EID: 0345094916     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2003.tb01508.x     Document Type: Article

References (45)

1. Ackerly, D. D., and M. J. Donoghue. 1995. Phylogeny and ecology reconsidered. J. Ecol. 83:730-732.
2. Barton, D. E., and F. N. David. 1956. Some notes on ordered random intervals. J. Roy. Statist. Soc. Ser. B 18:79-94.
3. Blomberg, S. P., and T. Garland Jr. 2002. Tempo and mode in evolution: phylogenetic inertia, adaptation and comparative methods. J. Evol. Biol. 15:899-910.
4. Borcard, D., and P. Legendre. 1994. Environmental control and spatial structure in ecological communities: an example using oribatid mites (Acari, Oribatei). Environ. Ecol. Stat. 1:37-53.
5. _. 2002. All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecol. Model. 153:51-68.
6. Borcard, D., P. Legendre, and P. Drapeau. 1992. Partialling out the spatial component of ecological variation. Ecology 73:1045-1055.
7. Casgrain, P., and P. Legendre. 2000. The R package for multivariate and spatial analysis. Ver. 4.0d3. Available via http:// www.fas.umontreal.ca/BIOL/ legendre/.
8. Catzeflis, F., C. Hänni, P. Sourrouille, and E. Douzery. 1995. Molecular systematics of hystricognath rodents: the contribution of sciurognath mitochondrial 12S rRNA sequences. Mol. Phyl. Evol. 4:357-360.
9. Cheverud, J., and M. Dow. 1985. An autocorrelation analysis of genetic variation due to lineal fission in social groups of rhesus macaques. Am. J. Phys. Anthropol. 67:113-122.
10. Cheverud, J. M., M. Dow, and W. Leutenegger. 1985. The quantitative assessment of phylogenetic constraints in comparative analyses: sexual dimorphism in body weight among primates. Evolution 39:1335-1351.
11. Cooper, A., and R. Fortey. 1998. Evolutionary explosions and the phylogenetic fuse. Trends Ecol. Evol. 13:151-156.
12. Damuth, J. 1981. Population density and body size in mammals. Nature 290:699-700.
13. _. 1987. Interspecific allometry of population density in mammals and other animals: the independence of body mass and population energy-use. Biol. J. Linn. Soc. 31:193-246.
14. _. 1993. Cope's rule, the island rule and the scaling of mammalian population density. Nature 365:748-750.
15. Diniz-Filho, J. A. F., C. E. R. de Sant'Ana, and L. M. Bini. 1998. An eigenvector method for estimating phylogenetic inertia. Evolution 52:1247-1262.
16. Dutilleul, P., J. D. Stockwell, D. Frigon, and P. Legendre. 2000. The Mantel-Pearson paradox: statistical considerations and ecological implications. J. Agr. Biol. Environ. Stat. 5:131-150.
17. Felsenstein, J. 1985. Phylogenies and the comparative method. Am. Nat. 125:1-15.
18. Fitter, A. H. 1995. Interpreting quantitative and qualitative characteristics in comparative analyses. J. Ecol. 83:730.
19. Frontier, S. 1976. Étude de la décroissance des valeurs propres dans une analyse en composantes principales: comparaison avec le modèle du bâton brisé. J. Exp. Mar. Biol. Ecol. 25:67-75.
20. Garland, T., Jr., P. H. Harvey, and A. R. Ives. 1992. Procedures for the analysis of comparative data using phylogenetically independent contrasts. Syst. Biol. 41:18-32.
21. Gittleman, J. L., and M. Kot. 1990. Adaptation: statistics and a null model for estimating phylogenetic effects. Syst. Biol. 39:227-241.
22. Gower, J. C. 1966. Some distant properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325-338.
23. Gower, J. C., and P. Legendre. 1986. Metric and Euclidean properties of dissimilarity coefficients. J. Classif. 3:5-48.
24. Grafen, A. 1989. The phylogenetic regression. Phil. Trans. R. Soc. Lond. B 326:119-157.
25. Harvey, P. H., and M. D. Pagel. 1991. The comparative method in evolutionary biology. Oxford Univ. Press, Oxford, U.K.
26. Harvey, P. H., A. F. Read, and S. Nee. 1995a. Why ecologists need to be phylogenetically challenged. J. Ecol. 83:535-536.
27. _. 1995b. Further remarks on the role of phylogeny in comparative ecology. J. Ecol. 83:733-734.
28. Hurlbert, S. H. 1984. Pseudoreplication and the design of ecological field experiments. Ecol. Monogr. 54:187-211.
29. Lawton, J. H. 1990. Species richness and population dynamics of animal assemblages. Patterns in body size: abundance space. Philos. Trans. R. Soc. Lond. B 330:283-291.
30. Legendre, P. 2000. Comparison of permutation methods for the partial correlation and partial Mantel tests. J. Stat. Comput. Sim. 67:37-73.
31. Legendre, P., and L. Legendre. 1998. Numerical ecology. 2d English ed. Elsevier Science BV, Amsterdam.
32. Legendre, P., Y. Desdevises, and E. Bazin. 2002. A statistical test for host-parasite coevolution. Syst. Biol. 51:217-234.
33. Legendre, P., F.-J. Lapointe, and P. Casgrain. 1994. Modeling brain evolution from behavior: a permutational regression approach. Evolution 48:1487-1499.
34. Lynch, M. 1991. Methods for the analysis of comparative data in evolutionary biology. Evolution 45:1065-1080.
35. Méot, A., P. Legendre, and D. Borcard. 1998. Partialling out the spatial component of ecological variation: questions and propositions in the linear modeling framework. Env. Ecol. Stat. 5(1): 1-27.
36. Morand, S., and P. H. Harvey. 2000. Mammalian metabolism, longevity and parasite species richness. Proc. Roy. Soc. Lond. B 267:1999-2003.
37. Morand, S., and R. Poulin. 1998. Density, body mass and parasite species richness of terrestrial mammals. Evol. Ecol. 12:717-727.
38. Nee, S., A. F. Read, J. D. D. Greenwood, and P. H. Harvey. 1991. The relationship between abundance and body size in British birds. Nature 351:312-313.
39. Rees, M. 1995. EC-PC comparative analyses. J. Ecol. 83:891-893.
40. Ricklefs, R. E. 1996. Phylogeny and ecology. Trends Ecol. Evol. 11:229-230.
41. Silva, M., and J. A. Downing. 1995. The allometric scaling of density and body mass: a nonlinear relationship for terrestrial mammals. Am. Nat. 145:704-727.
42. ter Braak, C. J. F., and P. Smilauer. 1998. Canoco reference manual and user's guide to Canoco for Windows: software for canonical community ordination. Ver. 4. Microcomputer Power, Ithaca, NY.
43. Westoby, M., M. R. Leishmann, and J. M. Lord. 1995a. On misinterpreting the 'phylogenetic correction'. J. Ecol. 83:531-534.
44. _. 1995b. Further remarks on 'phylogenetic correction'. J. Ecol. 83:727-730.
45. _. 1995c. Issues of interpretation after relating comparative datasets to phylogeny. J. Ecol. 83:892-893.