Population genetic diversity of mud crab (Scylla paramamosain) in Hainan Island of China based on mitochondrial DNA

Biochemical Systematics and Ecology

Volumn 39, Issue 4-6, 2011, Pages 434-440

  Ma, Hongyu ^a   Ma, Chunyan ^a   Ma, Lingbo ^a  

^a SOUTH CHINA SEA FISHERIES RESEARCH INSTITUTE   (China)

Author keywords

Genetic diversity; Hainan Island; MtDNA; Mud crab; Scylla paramamosain

Indexed keywords

COHORT ANALYSIS; CRAB; EVOLUTIONARY BIOLOGY; GENETIC ANALYSIS; GENETIC VARIATION; MITOCHONDRIAL DNA; MUD; NEUTRALIZATION; POPULATION DISTRIBUTION;

CHINA; HAINAN;

DECAPODA (CRUSTACEA); SCYLLA PARAMAMOSAIN;

EID: 80054941371     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2011.06.005     Document Type: Article

References (41)

1. Avise J. Phylogeography 1998, Harvard University Press, Cambridge, MA.
2. Chakraborty R. Mitochondrial DNA polymorphism reveals hidden heterogeneity within some Asian populations. Am. J. Hum. Genet. 1990, 47:87-94.
3. Davis, J.A., 2003. Development of hatchery techniques for the mud crab Scylla serrata (Forskål) in South Africa. Ph D Thesis. Ghet University, Gent, Belgium.
4. Dickerson B.R., Ream R.R., Vignieri S.N., Bentzen P. Population structure as revealed by mtDNA and microsatellites in northern fur seals, Callorhinus ursinus, throughout their range. PLOS One 2010, 5:10671-10679.
5. Ewens W.J. The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 1972, 3:87-112.
6. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:491-497.
7. Excoffier L., Laval G., Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 2005, 1:47-50.
8. Feng Y., Li Q., Kong L., Zheng X. DNA barcoding and phylogenetic analysis of Pectinidae (Mollusca: Bivalvia) based on mitochondrial COI and 16S rRNA genes. Mol. Biol. Rep. 2011, 38:291-299.
9. Fratini S., Ragionieri L., Cannicci S. Stock structure and demographic history of the Indo-West Pacific mud crab Scylla serrata. Estuar. Coast. Shelf S 2010, 86:51-61.
10. Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
11. Fuji K., Hasegawa O., Honda K., Kumasaka K., Sakamoto T., Okamoto N. Marker-assisted breeding of a lymphocystis disease-resistant Japanese flounder (Paralichthys olivaceus). Aquaculture 2007, 272:291-295.
12. Gvozkik V., Moravec J., Klutsch C., Kotlik P. Phylogeography of the Middle Eastern tree frogs (Hyla, Hylidae, Amphibia) as inferred from nuclear and mitochondrial DNA variation, with a description of a new species. Mol. Phylogenet. Evol. 2010, 55:1146-1166.
13. Han Z.Q., Gao T.X., Yanagimoto T., Sakurai Y. Genetic population structure of Nibea albiflora in the Yellow Sea and East China sea. Fish. Sci. 2008, 74:544-552.
14. He L., Zhang A., Weese D., Zhu C., Jiang C., Qiao Z. Late Pleistocene population expansion of Scylla paramamosain along the coast of China: a population dynamic response to the Last Interglacial sea level highstand. J. Exp. Mar. Biol. Ecol. 2010, 385:20-28.
15. Karlsson S., Moen T., Hindar K. Contrasting patterns of gene diversity between microsatellites and mitochondrial SNPs in farm and wild Atlantic salmon. Conserv. Genet. 2010, 11:571-582.
16. Keskin E., Can A. Phylogenetic relationships among four species and a sub-species of Mullidae (Actinopterygii: Perciformes) based on mitochondrial cytochrome B, 12S rDNA and cytochrome oxidase II genes. Biochem. Syst. Ecol. 2009, 37:653-661.
17. Ki J., Hwang D., Park T., Han S., Lee J. A comparative analysis of the complete mitochondrial genome of the Eurasian otter Lutra lutra (Carnivora: Mustelidae). Mol. Biol. Rep. 2010, 37:1943-1955.
18. Liu P., Meng X.H., Kong J., Zhuang Z.M., Ma C.Y., Wang Q.Y. Genetic diversity analysis of Penaeus chinensis by microsatellite DNA. Pro. Nat. Sci. 2004, 14(3):333-338.
19. Li Y.L., Kong X.Y., Yu Z.N., Kong J., Ma S., Chen L.M. Genetic diversity and historical demography of Chinese shrimp Feneropenaeus chinensis in Yellow Sea and Bohai Sea based on mitochondrial DNA analysis. Afr. J. Biotechnol. 2009, 8:1193-1202.
20. Ma C.Y., Cheng Q.Q., Zhang Q.Y., Zhuang P., Zhao Y.L. Genetic variation of Coilia ectenes (Clupeiformes: Engraulidae) revealed by the complete cytochrome b sequences of mitochondrial DNA. J. Exp. Mar. Biol. Ecol. 2010, 385:14-19.
21. Ma H.Y., Yang J.F., Su P.Z., Chen S.L. Genetic analysis of gynogenetic and common populations of Verasper moseri using SSR markers. Wuhan. Univ. J. Nat. Sci. 2009, 14:267-273.
22. Ma H.Y., Ma C.Y., Ma L.B., Cui H.Y. Novel polymorphic microsatellite markers in Scylla paramamosain and cross-species amplification in related crab species. J. Crustacean Biol. 2010, 30:441-444.
23. Ma L.B., Zhang F.Y., Ma C.Y., Qiao Z.G. Scylla paramamosain (Estampador) the most common mud crab (genus Scylla) in China: evidence from mtDNA. Aquac. Res. 2006, 37:1694-1698.
24. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, New York, 512 pp.
25. Ortega-Villaizan Romo M., Suzuki S., Nakajima M., Taniguchi N. Genetic evaluation of interindividual relatedness for broodstock management of the rare species barfin flounder Verasper moseri using microsatellite DNA markers. Fisheries Sci. 2006, 72:33-39.
26. Perrine D. The Mangrove Crab on Ponape 1979, Marine Resources Division, Ponape Eastern Caroline Islands, 88 pp.
27. Polzin T., Daneshmand S.V. On steiner trees and minimum spanning trees in hypergraphs. Oper. Res. Lett. 2003, 31:12-20.
28. Rogers A. Genetic evidence for a pleistocene population explosion. Evolution 1995, 49:608-615.
29. Rozas J., Sanchez-Delbarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
30. Shen X., Ren J., Cui Z., Sha Z., Wang B., Xiang J., Liu B. The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations. Gene 2007, 403:98-109.
31. Shen Y., Lai Q. Present status of mangrove crab (Scylla serrata (Forskål)) culture in China. Naga, the ICLARM Quarterly, January 1994 1994, 28-29.
32. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
33. Takano M., Barinova A., Sugaya T., Obata Y., Watanabe T., Ikeda M., Taniguchi N. Isolation and characterization of microsatellite DNA markers from mangrove crab, Scylla paramamosain. Mol. Ecol. Notes 2005, 5:794-795.
34. Tamura K., Dudley J., Nei M., Kumar S. MEGA 4: molecular evolutionary genetics anlysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
35. Wang C.H., Li C.H., Li S.F. Mitochondrial DNA-inferred population structure and demographic history of the mitten crab (Eriocheir sensu stricto) found along the coast of mainland China. Mol. Ecol. 2008, 17:3515-3527.
36. Watterson G. The homozygosity test of neutrality. Genetics 1978, 88:405-417.
37. Xu J., Chan T., Tsang L.M., Chu K.H. Phylogeography of the mitten crab Eriocheir sensu stricto in East Asia: Pleistocene isolation, population expansion and secondary contact. Mol. Phylogenet. Evol. 2009, 52:45-56.
38. Yamauchi M.M., Miya M.U., Nishida M. Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene 2003, 311:129-135.
39. Yu G., Zhang M., Yang J. Generic allocation of Indian and Sri Lankan Philautus (Anura: Rhacophoridae) inferred from 12S and 16S rRNA genes. Biochem. Syst. Ecol. 2010, 38:402-409.
40. Zhan A., Hu J., Hu X., Hui M., Wang M., Peng W., Huang X., Wang S., Lu W., Sun C., Bao Z. Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri). Anim. Genet. 2009, 40:821-831.
41. Zhao C., Li Q., Kong L. Inheritance of AFLP markers and their use for genetic diversity analysis in wild and farmed scallop (Chlamys farreri). Aquaculture 2009, 287:67-74.