Novel polymorphic microsatellite markers in scylla paramamosain and cross-species amplification in related crab species

Journal of Crustacean Biology

Volumn 30, Issue 3, 2010, Pages 441-444

  Ma, Hongyu ^a   Ma, Chunyan ^a   Ma, Lingbo ^a   Cui, Haiyu ^a  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

Cross species amplification; Microsatellite markers; PIMA; RAPD; Scylla paramamosain

Indexed keywords

DECAPODA (CRUSTACEA); SCYLLA PARAMAMOSAIN;

EID: 77953598919     PISSN: 02780372     EISSN: None     Source Type: Journal    
DOI: 10.1651/09-3263.1     Document Type: Article

References (32)

1. Botstein, D., R. L. White, M. Skolnick, and R. W. Davis. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics 32: 314-331.
2. Brookfield, J. F. Y. 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology 5: 453-455.
3. Chiang, T. Y., Y. M. Ju, L. S. Fang, and C. J. Lin. 2009. Isolation and characterization of polymorphic microsatellite loci in Candidia barbata (Cyprinidae) using PCR-based isolation of microsatellite arrays (PIMA). Conservation Genetics 10: 503-505.
4. Cifarelli, R. A., M. Gallitelli, and F. Cellini. 1995. Random amplified hybridization microsatellites (rahm)-isolation of a new class of microsatellite-containing DNA clones. Nucleic Acids Research 23: 3802-3803.
5. Cowan, L. 1985. Crab farming in Japan, Taiwan and the Philippines. Queensland Department of Primary Industries, Queensland, Australia.
6. Ender, A., K. Schwenk, T. Stadler, B. Streit, and B. Schierwater. 1996. RAPD identification of microsatellites in Daphnia. Molecular Ecology 5: 437-441.
7. Estampador, E. P. 1949. Studies on Scylla (Crustacea: Portunidae). I. Revision of the genus. Philippine Journal of Science 78: 95-108.
8. Fabricius, J. C. 1798. Supplementum Entomologiae Systematicae. Hafniae.
9. Forskål, P. 1775. Discriptiones Animalium Avium, Amphibiorum, Piscium, Insectorum, Vermium; quae in Itinere orientali observavit. Petrus Forskål. Post mortem auctoris editit Carsten Niebuhr. Adjuncta est material Medica Kahirina: xxxiv, 164 pp.
10. Hafniae. Guyomar, R., S. Mauger, K. Tabet-Canale, S. Martieau, C. Genet, F. Krieg, and E. Quillet. 2006. A type I and II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 7: 302-314.
11. Herbst, J. F. W. 1796 (1782-1804). Versuch einer Naturgeschichte der Krabben und Krebse, nebst einer systematischen Beschereibung ihrer verschiedenen Arten. 2: 1-226. Berlin and Stralsund.
12. Hsu, K. C., J. P. Wang, X. L. Chen, and T. Y. Chiang. 2004. Isolation and characterization of microsatellite loci in Acrossocheilus paradoxus (Cyprinidae) using PCR-based isolation of microsatellite arrays (PIMA). Conservation Genetics 5: 113-115.
13. Keenan, C.P. 1999. Aquaculture of the mud crab, genus Scylla past, present and future. In: Mud Crab Aquaculture and Biology. ACIAR Proceedings 78, 9-13. Watson Ferguson and Company, Canberra, Australia.
14. Li, Q., and J. M. Wan. 2005. SSRHUNTER: Development of a local searching software for SSR sites. Hereditas 27: 808-810.
15. Lin, H. D., T. W. Lee, F. J. Lin, C. J. Lin, and T. Y. Chiang. 2008. Isolation and characterization of microsatellite loci in the endangered freshwater fish Pararasbora moltrechti (Cyprinidae) using PCR-based isolation of microsatellite arrays (PIMA). Conservation Genetics 9: 945-947.
16. Liu, Y. G., B. L. Bao, L. X. Liu, L. Wang, and H. Lin. 2008. Isolation and characterization of polymorphic microsatellite loci from RAPD product in half-smooth tongue sole (Cynoglossus semilaevis) and a test of crossspecies amplification. Molecular Ecology Notes 8: 202-204.
17. Lunt, D. H., W. F. Hutchinson, and G. R. Carvalho. 1999. An efficient method for PCR-based isolation of microsatellite arrays (PIMA). Molecular Ecology 8: 891-893.
18. Ma, H. Y., J. F. Yang, P. Z. Su, and S. L. Chen. 2009b. Genetic analysis of gynogenetic and common populations of Verasper moseri using SSR markers. Wuhan University Journal of Natural Sciences 14: 267-273.
19. J. Z. Bi, C. W. Shao, Y. Chen, G. D. Miao, and S. L. Chen. 2009a. Development of 40 microsatellite markers in spotted halibut (Verasper variegatus) and the cross-species amplification in barfin flounder (Verasper moseri). Animal Genetics 40, 576-578.
20. Ma, L. B., F. Y. Zhang, C. Y. Ma, and Z. G. Qiao. 2006. Scylla paramamosain (Estampador) the most common mud crab (Genus Scylla) in China: evidence from mtDNA. Aquaculture Research 37: 1694-1698.
21. McDonald, G. J., R. G. Danzmann, and M. M. Ferguson. 2004. Relatedness determination in the absence of pedigree information in three cultured strains of rainbow trout (Oncorhynchus mykiss). Aquaculture 233: 65-78.
22. Obata, Y., H. Imai, T. Kitakado, K. Hamasaki, and S. Kitada. 2006. The contribution of stocked mud crabs Scylla paramamosain to commercial catches in Japan, estimated using a genetic stock identification technique. Fisheries Research 80: 113-121.
23. O'Reilly, P., and J. M. Wright. 1995. The evolving technology DNA fingerprinting and its application to fisheries and aquaculture. Journal of Fish Biology 47 (suppl A): 29-55.
24. Pettay, D. T., and T. C. Lajeunesse. 2009. Microsatellite loci for assessing genetic diversity, dispersal and clonality of coral symbionts in 'stresstolerant' clade D Symbiodinium. Molecular Ecology Resources 9: 1022-1025.
25. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
26. Sun, Y. F., H. Y. Sun, Y. Zhao, G. H. Qian, Q. Zhao, and N. F. Liu. 2009. Isolation and characterization of microsatellite loci in the freshwater crab Sinopotamon yangtsekiense and cross-species amplification in related taxa (Decapoda: Brachyura). Journal of Crustacean Biology 29: 273-274.
27. Takano, M., A. Barinova, T. Sugaya, Y. Obata, T. Watanabe, M. Ikeda, and N. Taniguchi. 2005. Isolation and characterization of microsatellite DNA markers from mangrove crab, Scylla paramamosain. Molecular Ecology Notes 5: 794-795.
28. Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills, and P. Shipley. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in mirosatellite data. Molecular Ecology Notes 4: 535-538.
29. Weber, J. L., and P. E. May. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chainreaction. American Journal of Human Genetics 44: 388-396.
30. Xu, X. J., G. Z. Wang, K. J. Wang, and S. J. Li. 2009. Isolation and characterization of ten new polymorphic microsatellite loci in the mud crab, Scylla paramamosain. Conservation Genetics 10: 1877-1878.
31. Yeh, F.C., R. C. Yang, and T. Boyle. 1999. POPGENE version 1.31. Microsoft window-bases freeware for population genetic analysis. Available: (www.ualberta.ca/,fyeh/). University of Alberta and the Centre for International Forestry Research.
32. Zhan, A., J. Hu, X. Hu, M. Hui, M. Wang, W. Peng, X. Huang, S. Wang, W. Lu, C. Sun, and Z. Bao. 2009. Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri). Animal Genetics 40: 821-831.