메뉴 건너뛰기




Volumn 18, Issue 12, 2011, Pages 1219-1225

Using a novel adaboost algorithm and chou's pseudo amino acid composition for predicting protein subcellular localization

Author keywords

AdaBoost; AdaBoost.ME; Multi class; PseAAC; Subcellular Localization

Indexed keywords

AMINO ACID;

EID: 80054884571     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986611797642797     Document Type: Article
Times cited : (46)

References (66)
  • 1
    • 34548606295 scopus 로고    scopus 로고
    • Review: Recent progress in protein subcellular location prediction
    • Chou, K.C.; Shen, H.B. Review: recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370, 1-16.
    • (2007) Anal. Biochem. , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 2
    • 39449105071 scopus 로고    scopus 로고
    • Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
    • Chou, K. C.; Shen, H. B. Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms. Nature Protocols, 2008, 3, 153-162.
    • (2008) Nature Protocols , vol.3 , pp. 153-162
    • Chou, K.C.1    Shen, H.B.2
  • 3
    • 0030861438 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence databank and its supplement TrEMBL
    • Bairoch, A.; Apweiler, R. The SWISS-PROT protein sequence databank and its supplement TrEMBL. Nucleic Acids Res. 2000, 25, 31-36.
    • (2000) Nucleic Acids Res. , vol.25 , pp. 31-36
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0028158009 scopus 로고
    • Protein folding classes: A geometric interpretation of the amino acid composition of globular proteins
    • Mao, B.; Chou, K. C.; Zhang, C. T. Protein folding classes: a geometric interpretation of the amino acid composition of globular proteins. Protein Engineering, 1994, 7, 319-330. (Pubitemid 24063130)
    • (1994) Protein Engineering , vol.7 , Issue.3 , pp. 319-330
    • Mao, B.1    Chou, K.-C.2    Zhang, C.-T.3
  • 5
    • 0031588694 scopus 로고    scopus 로고
    • Relation between amino acid composition and cellular location of proteins
    • DOI 10.1006/jmbi.1996.0804
    • Cedano, J.; Aloy, P.; J.A, P'erez-Pons Querol E. Relation betweenamino acid composition and cellular location of proteins. J. Mol. Biol., 1997, 266, 594-600. (Pubitemid 27117290)
    • (1997) Journal of Molecular Biology , vol.266 , Issue.3 , pp. 594-600
    • Cedano, J.1    Aloy, P.2    Perez-Pons, J.A.3    Querol, E.4
  • 6
    • 0038519321 scopus 로고
    • Contribution of hydrophobic interactions to the stability of the globular conformation of proteins
    • Tanford, C. Contribution of hydrophobic interactions to the stability of the globular conformation of proteins. J. Am. Chem. Soc., 1962, 84, 4240-4274.
    • (1962) J. Am. Chem. Soc. , vol.84 , pp. 4240-4274
    • Tanford, C.1
  • 7
    • 0003395743 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • Hopp, T.P.; Woods, K.R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. USA, 1981, 86, 152-156.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 152-156
    • Hopp, T.P.1    Woods, K.R.2
  • 8
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo amino acid composition
    • Chou, K. C. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins: Struct. Funct. Gene., 2001, 43, 246-255.
    • (2001) Proteins: Struct. Funct. Gene. , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 9
    • 34447106453 scopus 로고    scopus 로고
    • Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition
    • DOI 10.1007/s00726-006-0475-y
    • Shi, J. Y.; Zhang, S. W,; Q, Pan.; Cheng, Y. M.; Xie, J. SVM-based method for subcellular localization of protein using multi-scale energy and pseudo amino acid composition. Amino Acids, 2007, 33, 69-74 (Pubitemid 47101465)
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 69-74
    • Shi, J.-Y.1    Zhang, S.-W.2    Pan, Q.3    Cheng, Y.-M.4    Xie, J.5
  • 10
    • 43149104120 scopus 로고    scopus 로고
    • Prediction of subcellular localization by incorporating evolutionary information and von Neumann entropies
    • DOI: 10.1007/s00726-007-0010-9
    • Zhang, S. W.; Zhang, Y. L.; Yang, H. F.; Pan, Q. Prediction of subcellular localization by incorporating evolutionary information and von Neumann entropies. Amino Acids, 2007, DOI: 10.1007/s00726-007-0010-9
    • (2007) Amino Acids
    • Zhang, S.W.1    Zhang, Y.L.2    Yang, H.F.3    Pan, Q.4
  • 11
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
    • DOI 10.1007/s00726-005-0225-6
    • Xiao, X.; Shao, S. H.; Ding, Y. S.; Huang, Z. D.; Chou, K. C. Using cellular automata images and pseudo amino acid composition to predict protein sub-cellular location. Amino Acids, 2006, 30, 49-54. (Pubitemid 43261126)
    • (2006) Amino Acids , vol.30 , Issue.1 , pp. 49-54
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chou, K.-C.5
  • 12
    • 21244494076 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
    • DOI 10.1007/s00726-005-0206-9
    • Gao, Y.; Shao, S. H.; Xiao, X.; Ding, Y. S.; Huang, Y. S.; Huang, Z. D.; Chou, K. C. Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids, 2005, 28, 373-376. (Pubitemid 40884727)
    • (2005) Amino Acids , vol.28 , Issue.4 , pp. 373-376
    • Gao, Y.1    Shao, S.2    Xiao, X.3    Ding, Y.4    Huang, Y.5    Huang, Z.6    Chou, K.-C.7
  • 13
    • 34249074523 scopus 로고    scopus 로고
    • Using ensemble classifier to identify membrane protein types
    • Shen, H. B.; Chou, K. C. Using ensemble classifier to identify membrane protein types. Amino Acids, 2007, 32, 483-488.
    • (2007) Amino Acids , vol.32 , pp. 483-488
    • Shen, H.B.1    Chou, K.C.2
  • 14
    • 49449087313 scopus 로고    scopus 로고
    • Predicting Subcellular Localization of Mycobacterial Proteins by using Chou's Pseudo Amino Acid Composition
    • Hao, Lin.; Hui, Ding.; Feng-Biao, Guo.; An-Ying, Zhang.; Jian Huang. Predicting Subcellular Localization of Mycobacterial Proteins by using Chou's Pseudo Amino Acid Composition. Protein Pept. Lett., 2008, 15, 739-744.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 739-744
    • Hao, L.1    Hui, D.2    Feng-Biao, G.3    An-Ying, Z.4    Huang, J.5
  • 15
    • 70350437815 scopus 로고    scopus 로고
    • Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition
    • Hao, Lin.; Hao, Wang.; Hui, Ding.; Ying-Li, Chen. Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition. Acta Biotheor., 2009, 57(3), 321-330.
    • (2009) Acta Biotheor. , vol.57 , Issue.3 , pp. 321-330
    • Hao, L.1    Hao, W.2    Hui, D.3    Ying-Li, C.4
  • 16
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou, K. C. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol., 2011, 273, 236-247
    • (2011) J. Theor. Biol. , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 17
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou, K. C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21, 10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 18
    • 61549096128 scopus 로고    scopus 로고
    • Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
    • Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16, 27-31.
    • (2009) Protein Pept. Lett. , vol.16 , pp. 27-31
    • Chen, C.1    Chen, L.2    Zou, X.3    Cai, P.4
  • 19
    • 34548009150 scopus 로고    scopus 로고
    • Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition
    • Chen, Y. L.; Li, Q. Z. Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition. J. Theor. Biol., 2007, 248, 377-381.
    • (2007) J. Theor. Biol. , vol.248 , pp. 377-381
    • Chen, Y.L.1    Li, Q.Z.2
  • 20
    • 48649105466 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
    • Ding, Y. S.; Zhang, T. L. Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: an approach with immune genetic algorithm-based ensemble classifier. Pattern Recognit. Lett., 2008, 29, 1887-1892.
    • (2008) Pattern Recognit. Lett. , vol.29 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 21
    • 78751550064 scopus 로고    scopus 로고
    • Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition
    • Ding, H.; Liu, L.; Guo, F. B.; Huang, J.; Lin, H. Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition. Protein Pept. Lett., 2011, 18, 58-63.
    • (2011) Protein Pept. Lett. , vol.18 , pp. 58-63
    • Ding, H.1    Liu, L.2    Guo, F.B.3    Huang, J.4    Lin, H.5
  • 22
    • 65349165718 scopus 로고    scopus 로고
    • Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition
    • Ding, H.; Luo, L.; Lin, H. Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett., 2009, 16, 351-355.
    • (2009) Protein Pept. Lett. , vol.16 , pp. 351-355
    • Ding, H.1    Luo, L.2    Lin, H.3
  • 23
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili, M.; Mohabatkar, H.; Mohsenzadeh, S. Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol., 2010, 263, 203-209.
    • (2010) J. Theor. Biol. , vol.263 , pp. 203-209
    • Esmaeili, M.1    Mohabatkar, H.2    Mohsenzadeh, S.3
  • 24
    • 77951992931 scopus 로고    scopus 로고
    • Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns
    • Gu, Q.; Ding, Y. S.; Zhang, T. L. Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns. Protein Pept. Lett., 2010, 17, 559-567.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 559-567
    • Gu, Q.1    Ding, Y.S.2    Zhang, T.L.3
  • 25
    • 79951606205 scopus 로고    scopus 로고
    • GPCR-2L: Predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
    • Xiao, X.; Wang, P.; Chou, K. C. GPCR-2L: Predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions. Mol. Biosyst., 2011, 7, 911-919.
    • (2011) Mol. Biosyst. , vol.7 , pp. 911-919
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 26
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • Li, F. M.; Li, Q. Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett., 2008, 15, 612-616.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 612-616
    • Li, F.M.1    Li, Q.Z.2
  • 27
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • Lin, H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol., 2008, 252, 350-356.
    • (2008) J. Theor. Biol. , vol.252 , pp. 350-356
    • Lin, H.1
  • 28
    • 73549100424 scopus 로고    scopus 로고
    • Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition
    • Gao, Q. B.; Ye, X. F.; Jin, Z. C.; He, J. Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition. Anal. Biochem., 2010, 398, 52-59.
    • (2010) Anal. Biochem. , vol.398 , pp. 52-59
    • Gao, Q.B.1    Ye, X.F.2    Jin, Z.C.3    He, J.4
  • 29
    • 78649756877 scopus 로고    scopus 로고
    • Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
    • Hayat, M.; Khan, A. Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition. J. Theor. Biol., 2011, 271, 10-17.
    • (2011) J. Theor. Biol. , vol.271 , pp. 10-17
    • Hayat, M.1    Khan, A.2
  • 30
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using Chou's pseudo amino acid composition
    • Mohabatkar, H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett., 2010, 17, 1207-1214.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 31
    • 77955964484 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes: An approach with support vector machine based on discrete wavelet transform
    • Qiu, J. D.; Huang, J. H.; Shi, S. P.; Liang, R. P. Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes: an approach with support vector machine based on discrete wavelet transform. Protein Pept. Lett., 2010, 17, 715-722.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 715-722
    • Qiu, J.D.1    Huang, J.H.2    Shi, S.P.3    Liang, R.P.4
  • 32
    • 78649324596 scopus 로고    scopus 로고
    • A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
    • Sahu, S. S.; Panda, G. A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction. Comput. Biol. Chem., 2010, 34, 320-327.
    • (2010) Comput. Biol. Chem. , vol.34 , pp. 320-327
    • Sahu, S.S.1    Panda, G.2
  • 33
    • 36348994911 scopus 로고    scopus 로고
    • Prediction protein structural classes with pseudo amino acid composition: Approximate entropy and hydrophobicity pattern
    • Zhang, T. L.; Ding, Y. S.; Chou, K. C. Prediction protein structural classes with pseudo amino acid composition: approximate entropy and hydrophobicity pattern. J. Theor. Biol., 2008, 250, 186-193.
    • (2008) J. Theor. Biol. , vol.250 , pp. 186-193
    • Zhang, T.L.1    Ding, Y.S.2    Chou, K.C.3
  • 34
    • 77955668989 scopus 로고    scopus 로고
    • Identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
    • Yu, L.; Guo, Y.; Li, Y.; Li, G.; Li, M.; Luo, J.; Xiong, W.; Qin, W.; Secret, P. Identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition. J. Theor. Biol., 2010, 267, 1-6.
    • (2010) J. Theor. Biol. , vol.267 , pp. 1-6
    • Yu, L.1    Guo, Y.2    Li, Y.3    Li, G.4    Li, M.5    Luo, J.6    Xiong, W.7    Qin, W.8    Secret, P.9
  • 35
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou, D.; He, Z.; He, J.; Xia, Y. Supersecondary structure prediction using Chou's pseudo amino acid composition. J. Comput. Chem., 2011, 32, 271-278.
    • (2011) J. Comput. Chem. , vol.32 , pp. 271-278
    • Zou, D.1    He, Z.2    He, J.3    Xia, Y.4
  • 36
    • 79953308534 scopus 로고    scopus 로고
    • Quat-2L: A web-server for predicting protein quaternary structural attributes
    • Xiao, X.; Wang, P.; Chou, K. C. Quat-2L: a web-server for predicting protein quaternary structural attributes. Mol. Divers., 2011, 15, 149-155.
    • (2011) Mol. Divers. , vol.15 , pp. 149-155
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 38
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC: A flexible web-server for generating various kinds of protein pseudo amino acid composition
    • Shen, H. B.; Chou, K. C. PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition. Anal. Biochem., 2008, 373, 386-388.
    • (2008) Anal. Biochem. , vol.373 , pp. 386-388
    • Shen, H.B.1    Chou K., .C.2
  • 39
    • 77950448057 scopus 로고    scopus 로고
    • Predicting drug-target interaction networks based on functional groups and biological features
    • He, Z.; Zhang, J.; Shi, X. H.; Hu, L. L.; Kong, X.; Cai, Y. D.; Chou, K. C. Predicting drug-target interaction networks based on functional groups and biological features. PLoS one, 2010, 5, e9603
    • (2010) PLoS One , vol.5
    • He, Z.1    Zhang, J.2    Shi, X.H.3    Hu, L.L.4    Kong, X.5    Cai, Y.D.6    Chou, K.C.7
  • 40
    • 77955199287 scopus 로고    scopus 로고
    • Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks
    • Chou, K. C. Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks, PLoS one, 2010, 5, e10972.
    • (2010) PLoS One , vol.5
    • Chou, K.C.1
  • 41
    • 33747880465 scopus 로고    scopus 로고
    • Ensemble classifier for protein folding pattern recognition
    • Shen, H. B.; Chou, K. C. Ensemble classifier for protein folding pattern recognition. Bioinformatics, 2006, 22, 1717-1722.
    • (2006) Bioinformatics , vol.22 , pp. 1717-1722
    • Shen, H.B.1    Chou, K.C.2
  • 42
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou, K. C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Current Proteomics, 2009, 6, 262-274.
    • (2009) Current Proteomics , vol.6 , pp. 262-274
    • Chou, K.C.1
  • 43
    • 33646393287 scopus 로고    scopus 로고
    • Predicting protein structural class with AdaBoost learner
    • Niu, B.; Cai, Y. D.; Lu, W. C.; Zheng, G. Y.; Chou, K. C. Predicting protein structural class with AdaBoost learner. Protein Pept. Lett., 2006, 13, 489-492.
    • (2006) Protein Pept. Lett. , vol.13 , pp. 489-492
    • Niu, B.1    Cai, Y.D.2    Lu, W.C.3    Zheng, G.Y.4    Chou, K.C.5
  • 44
  • 45
    • 0031211090 scopus 로고    scopus 로고
    • A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting
    • Freund, Y.; Schapire, R. A decision-theoretic generalization of online learing and an application to boosting. J. Comput. Syst. Sci., 1997, 1, 119-139. (Pubitemid 127433398)
    • (1997) Journal of Computer and System Sciences , vol.55 , Issue.1 , pp. 119-139
    • Freund, Y.1    Schapire, R.E.2
  • 46
    • 0033281701 scopus 로고    scopus 로고
    • Improved boosting algorithms using confidence-rated predictions
    • DOI 10.1023/A:1007614523901
    • Schapire, R. E.; Singer, Y. Improved boosting algorithms using confidence-rated predictions. Mach. Learn., 1999, 37, 297-336 (Pubitemid 32210620)
    • (1999) Machine Learning , vol.37 , Issue.3 , pp. 297-336
    • Schapire, R.E.1    Singer, Y.2
  • 48
    • 79954503900 scopus 로고    scopus 로고
    • R Development Core Team
    • URL (Accessed Dec 23, 2010)
    • R Development Core Team. R Foundation for Statistical Computing,Vienna, Austria. 2010, URL http://www.R-project.org/. (Accessed Dec 23, 2010)
    • (2010) R Foundation for Statistical ComputingVienna Austria
  • 50
    • 0346786584 scopus 로고    scopus 로고
    • Arcing classifiers
    • Breiman, L. Arcing classifiers. The Annals of Statistics, 1998, 26, 3, 801-849. (Pubitemid 128450035)
    • (1998) Annals of Statistics , vol.26 , Issue.3 , pp. 801-849
    • Breiman, L.1
  • 51
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews, B.W. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta., 1975, 405,442-451
    • (1975) Biochim. Biophys. Acta. , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 52
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • Chou, K. C.; Zhang, C. T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30, 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol. , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 53
    • 78649756877 scopus 로고    scopus 로고
    • Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
    • Hayat, M.; Khan, A. Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition. J. Theor. Biol., 2011, 271, 10-17.
    • (2011) J. Theor. Biol. , vol.271 , pp. 10-17
    • Hayat, M.1    Khan, A.2
  • 54
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng, Y. H.; Guo, Y. Z.; Xiao, R. Q.; Yang, L.; Yu, L. Z.; Li, M. L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol., 2009, 259, 366-372.
    • (2009) J. Theor. Biol. , vol.259 , pp. 366-372
    • Zeng, Y.H.1    Guo, Y.Z.2    Xiao, R.Q.3    Yang, L.4    Yu, L.Z.5    Li, M.L.6
  • 55
    • 77955198678 scopus 로고    scopus 로고
    • Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms
    • Masso, M.; Vaisman, I. I. Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms. J. Theor. Biol., 2010, 266, 560-568.
    • (2010) J. Theor. Biol. , vol.266 , pp. 560-568
    • Masso, M.1    Vaisman, I.I.2
  • 57
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
    • DOI 10.2174/092986608784246443
    • Jiang, X.; Wei, R.; Zhang, T. L.; Gu, Q. Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy. Protein Pept. Lett., 2008, 15, 392-396. (Pubitemid 351679342)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.4 , pp. 392-396
    • Jiang, X.1    Wei, R.2    Zhang, T.3    Gu, Q.4
  • 58
    • 79251604991 scopus 로고    scopus 로고
    • Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties
    • Hu, L.; Huang, T.; Shi, X.; Lu, W. C.; Cai, Y. D.; Chou, K. C. Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties. PLoS one, 2011, 6, e14556.
    • (2011) PLoS One , vol.6
    • Hu, L.1    Huang, T.2    Shi, X.3    Lu, W.C.4    Cai, Y.D.5    Chou, K.C.6
  • 59
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    • Xiao, X.; Wang, P.; Chou, K. C. GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes. J. Comput. Chem., 2009, 30, 1414-1423.
    • (2009) J. Comput. Chem. , vol.30 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 60
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
    • Zhang, G. Y.; Fang, B. S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition. J. Theor. Biol., 2008, 253, 310-315.
    • (2008) J. Theor. Biol. , vol.253 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 61
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • DOI 10.1016/j.jtbi.2007.06.001, PII S0022519307002809
    • Zhou, X. B.; Chen, C.; Li, Z. C.; Zou, X. Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol., 2007, 248, 546-551. (Pubitemid 47368372)
    • (2007) Journal of Theoretical Biology , vol.248 , Issue.3 , pp. 546-551
    • Zhou, X.-B.1    Chen, C.2    Li, Z.-C.3    Zou, X.-Y.4
  • 62
    • 33750528233 scopus 로고    scopus 로고
    • A novel method for apoptosis protein subcellular localization prediction combining encoding based on grouped weight and support vector machine
    • Zhang, Z.H.; Wang, Z.H.; Zhang, Z.R.; Wang, Y.X. A novel method for apoptosis protein subcellular localization prediction combining encoding based on grouped weight and support vector machine. FEBS Lett. 2006, 580, 6169-6174.
    • (2006) FEBS Lett. , vol.580 , pp. 6169-6174
    • Zhang, Z.H.1    Wang, Z.H.2    Zhang, Z.R.3    Wang, Y.X.4
  • 63
    • 79953316878 scopus 로고    scopus 로고
    • ILoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
    • Chou, K. C.; Wu, Z. C.; Xiao, X. iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins. PLoS One, 2011, 6, e18258.
    • (2011) PLoS One , vol.6
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 64
    • 77956199192 scopus 로고    scopus 로고
    • Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization
    • Chou, K. C.; Shen, H. B. Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization. PLoS one, 2010, 5, e11335.
    • (2010) PLoS One , vol.5
    • Chou, K.C.1    Shen, H.B.2
  • 65
    • 78650746655 scopus 로고    scopus 로고
    • Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms
    • (openly accessible at
    • Chou, K. C.; Shen, H. B. Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms. Natural Science, 2010, 2, 1090-1103 (openly accessible at http://www.scirp.org/journal/NS/).
    • (2010) Natural Science , vol.2 , pp. 1090-1103
    • Chou, K.C.1    Shen, H.B.2
  • 66
    • 77649339280 scopus 로고    scopus 로고
    • Review: Recent advances in developing web-servers for predicting protein attributes
    • (openly accessible at
    • Chou, K. C.; Shen, H. B. Review: recent advances in developing web-servers for predicting protein attributes. Natural Science, 2009, 2, 63-92 (openly accessible at http://www.scirp.org/journal/NS/).
    • (2009) Natural Science , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.