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Volumn 61, Issue 9, 2011, Pages 2167-2172

Paenibacillus algorifonticola sp. nov., isolated from a cold spring

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; FATTY ACID; GLYCOLIPID; MENAQUINONE; MENAQUINONE 7; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID; UNCLASSIFIED DRUG;

EID: 80054766244     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.025346-0     Document Type: Article
Times cited : (39)

References (49)
  • 2
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus
    • Ash, C., Priest, F. G. & Collins M.D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 3
    • 0043034491 scopus 로고
    • Paenibacillus gen nov
    • Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51
    • Ash, C., Priest, F. G. & Collins, M. D. (1994). Paenibacillus gen nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51. Int J Syst Bacteriol 44, 852.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 852
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 5
    • 0036201564 scopus 로고    scopus 로고
    • Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food
    • Berge, O., Guinebretiére, M. H., Achouak, W., Normand, P. & Heulin, T. (2002). Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol 52, 607-616.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 607-616
    • Berge, O.1    Guinebretiére, M.H.2    Achouak, W.3    Normand, P.4    Heulin, T.5
  • 7
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.-H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.-W.7
  • 8
    • 0000738385 scopus 로고
    • Genus Bacillus Cohn 1872, 174AL
    • Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins
    • Claus, D. & Berkeley, R. C. W. (1986). Genus Bacillus Cohn 1872, 174AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1105-1139
    • Claus, D.1    Berkeley, R.C.W.2
  • 9
    • 0019305403 scopus 로고
    • Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa
    • Collins, M. D., Goodfellow, M. & Minnikin, D. E. (1980). Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. J Gen Microbiol 118, 29-37.
    • (1980) J Gen Microbiol , vol.118 , pp. 29-37
    • Collins, M.D.1    Goodfellow, M.2    Minnikin, D.E.3
  • 10
    • 0036153511 scopus 로고    scopus 로고
    • PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene- degrading bacterium from the rhizosphere of salt marsh plants
    • Daane, L. L., Harjono, I., Barns, S. M., Launen, L. A., Palleron, N. J. & Häggblom, M. M. (2002). PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene- degrading bacterium from the rhizosphere of salt marsh plants. Int J Syst Evol Microbiol 52, 131-139.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 131-139
    • Daane, L.L.1    Harjono, I.2    Barns, S.M.3    Launen, L.A.4    Palleron, N.J.5    Häggblom, M.M.6
  • 11
    • 0036739153 scopus 로고    scopus 로고
    • Paenibacillus glycanilyticus sp. nov., a novel species that degrades heteropolysaccharide produced by the cyanobacterium Nostoc commune
    • Dasman, K., Kajiyama, S., Kawasaki, H., Yagi, M., Seki, T., Fukusaki, E. & Kobayashi, A. (2002). Paenibacillus glycanilyticus sp. nov., a novel species that degrades heteropolysaccharide produced by the cyanobacterium Nostoc commune. Int J Syst Evol Microbiol 52, 1669-1674.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1669-1674
    • Dasman, K.1    Kajiyama, S.2    Kawasaki, H.3    Yagi, M.4    Seki, T.5    Fukusaki, E.6    Kobayashi, A.7
  • 12
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0003437299 scopus 로고    scopus 로고
    • version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2002). PHYLIP (phylogenetic inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2002) PHYLIP (phylogenetic Inference Package)
    • Felsenstein, J.1
  • 15
    • 77956986901 scopus 로고
    • Preparation of buffers for use in enzyme studies
    • Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
    • (1955) Methods Enzymol , vol.1 , pp. 138-146
    • Gomori, G.1
  • 16
    • 23144433822 scopus 로고    scopus 로고
    • PHYML online-a web server for fast maximum likelihood-based phylogenetic inference
    • (Web Server issue)
    • Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). PHYML online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33 (Web Server issue), W557-W559.
    • (2005) Nucleic Acids Res , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 17
    • 0006690125 scopus 로고
    • A new modification and application of the Gram stain
    • Hucker, G. J. (1921). A new modification and application of the Gram stain. J Bacteriol 6, 395-397.
    • (1921) J Bacteriol , vol.6 , pp. 395-397
    • Hucker, G.J.1
  • 18
    • 26244454786 scopus 로고    scopus 로고
    • Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China
    • Jeon, C. O., Lim, J.-M., Lee, J.-M., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1891-1896
    • Jeon, C.O.1    Lim, J.-M.2    Lee, J.-M.3    Xu, L.-H.4    Jiang, C.-L.5    Kim, C.-J.6
  • 19
    • 13244287867 scopus 로고    scopus 로고
    • The type species of the genus Paenibacillus Ash et al. 1994 is Paenibacillus polymyxa. Opinion 77
    • Judicial Commission of the International Committee for Systematics of Prokaryotes
    • Judicial Commission of the International Committee for Systematics of Prokaryotes (2005). The type species of the genus Paenibacillus Ash et al. 1994 is Paenibacillus polymyxa. Opinion 77. Int J Syst Evol Microbiol 55, 513.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 513
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 24
    • 84963036271 scopus 로고
    • Quantitative phyletics and evolution of anurans
    • Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and evolution of anurans. Syst Zool 18, 1-4.
    • (1969) Syst Zool , vol.18 , pp. 1-4
    • Kluge, A.G.1    Farris, J.S.2
  • 26
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
    • (1987) Methods Microbiol , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 27
  • 28
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologistcentric software for evolutionary analysis of DNA and protein sequences
    • Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 29
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing, Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
    • Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
    • (1991) Nucleic Acid Techniques In Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 30
    • 0000978501 scopus 로고
    • Determination of carbohydrate metabolism of marine bacteria
    • Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
    • (1963) J Bacteriol , vol.85 , pp. 1183-1184
    • Leifson, E.1
  • 32
    • 77956996468 scopus 로고
    • Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA
    • Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
    • (1968) Methods Enzymol , vol.12 B , pp. 195-206
    • Mandel, M.1    Marmur, J.2
  • 33
    • 5544228332 scopus 로고    scopus 로고
    • Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic environment
    • Montes, M. J., Mercadé, E., Bozal, N. & Guinea, J. (2004). Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic environment. Int J Syst Evol Microbiol 54, 1521-1526.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1521-1526
    • Montes, M.J.1    Mercadé, E.2    Bozal, N.3    Guinea, J.4
  • 35
    • 16844368871 scopus 로고    scopus 로고
    • Paenibacillus phyllosphaerae sp. nov., a xylanolytic bacterium isolated from the phyllosphere of Phoenix dactylifera
    • Rivas, R., Mateos, P. F., Martínez-Molina, E. & Velázquez, E. (2005). Paenibacillus phyllosphaerae sp. nov., a xylanolytic bacterium isolated from the phyllosphere of Phoenix dactylifera. Int J Syst Evol Microbiol 55, 743-746.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 743-746
    • Rivas, R.1    Mateos, P.F.2    Martínez-Molina, E.3    Velázquez, E.4
  • 36
    • 33845724582 scopus 로고    scopus 로고
    • Paenibacillus cellulosilyticus sp. nov., a cellulolytic and xylanolytic bacterium isolated from the bract phyllosphere of Phoenix dactylifera
    • Rivas, R., García-Fraile, P., Mateos, P. F., Martínez-Molina, E. & Velázquez, E. (2006). Paenibacillus cellulosilyticus sp. nov., a cellulolytic and xylanolytic bacterium isolated from the bract phyllosphere of Phoenix dactylifera. Int J Syst Evol Microbiol 56, 2777-2781.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2777-2781
    • Rivas, R.1    García-Fraile, P.2    Mateos, P.F.3    Martínez-Molina, E.4    Velázquez, E.5
  • 37
    • 4344571043 scopus 로고    scopus 로고
    • Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures
    • Roux, V. & Raoult, D. (2004). Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54, 1049-1054.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1049-1054
    • Roux, V.1    Raoult, D.2
  • 38
    • 44449127788 scopus 로고    scopus 로고
    • Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine
    • Roux, V., Fenner, L. & Raoult, D. (2008). Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. Int J Syst Evol Microbiol 58, 682-687.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 682-687
    • Roux, V.1    Fenner, L.2    Raoult, D.3
  • 40
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 41
    • 0015462556 scopus 로고
    • Peptidoglycan types of bacterial cell walls and their taxonomic implications
    • Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
    • (1972) Bacteriol Rev , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 42
    • 0030999754 scopus 로고    scopus 로고
    • Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus
    • Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 289-298
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Nakamura, L.K.4    Komagata, K.5
  • 43
    • 0000221252 scopus 로고
    • General characterization
    • Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
    • (1981) In Manual of Methods For General Bacteriology , pp. 409-443
    • Smibert, R.M.1    Krieg, N.R.2
  • 44
    • 16844365635 scopus 로고    scopus 로고
    • Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans
    • Takeda, M., Suzuki, I. & Koizumi, J. (2005). Paenibacillus hodogayensis sp. nov., capable of degrading the polysaccharide produced by Sphaerotilus natans. Int J Syst Evol Microbiol 55, 737-741.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 737-741
    • Takeda, M.1    Suzuki, I.2    Koizumi, J.3
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 49
    • 27844462438 scopus 로고    scopus 로고
    • Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea
    • Yoon, J.-H., Kang, S.-J., Yeo, S.-H. & Oh, T.-K. (2005). Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea. Int J Syst Evol Microbiol 55, 2339-2344.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2339-2344
    • Yoon, J.-H.1    Kang, S.-J.2    Yeo, S.-H.3    Oh, T.-K.4


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