-
1
-
-
0035977845
-
Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity
-
10.1016/S0378-4274(01)00267-3, 11323195
-
Waring JF, Ciurlionis R, Jolly RA, Heindel M, Ulrich RG. Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity. Toxicol Lett 2001, 120(1-3):359-368. 10.1016/S0378-4274(01)00267-3, 11323195.
-
(2001)
Toxicol Lett
, vol.120
, Issue.1-3
, pp. 359-368
-
-
Waring, J.F.1
Ciurlionis, R.2
Jolly, R.A.3
Heindel, M.4
Ulrich, R.G.5
-
2
-
-
0035092715
-
Challenges and limitations of gene expression profiling in mechanistic and predictive toxicology
-
10.1093/toxsci/60.1.6, 11222867
-
Fielden MR, Zacharewski TR. Challenges and limitations of gene expression profiling in mechanistic and predictive toxicology. Toxicol Sci 2001, 60(1):6-10. 10.1093/toxsci/60.1.6, 11222867.
-
(2001)
Toxicol Sci
, vol.60
, Issue.1
, pp. 6-10
-
-
Fielden, M.R.1
Zacharewski, T.R.2
-
3
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
10.1126/science.286.5439.531, 10521349
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999, 286(5439):531-537. 10.1126/science.286.5439.531, 10521349.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
4
-
-
43249129586
-
Early diagnosis of pancreatic cancer: neutrophil gelatinase-associated lipocalin as a marker of pancreatic intraepithelial neoplasia
-
10.1038/sj.bjc.6604329, 2391106, 18392050
-
Moniaux N, Chakraborty S, Yalniz M, Gonzalez J, Shostrom VK, Standop J, Lele SM, Ouellette M, Pour PM, Sasson AR, et al. Early diagnosis of pancreatic cancer: neutrophil gelatinase-associated lipocalin as a marker of pancreatic intraepithelial neoplasia. Br J Cancer 2008, 98(9):1540-1547. 10.1038/sj.bjc.6604329, 2391106, 18392050.
-
(2008)
Br J Cancer
, vol.98
, Issue.9
, pp. 1540-1547
-
-
Moniaux, N.1
Chakraborty, S.2
Yalniz, M.3
Gonzalez, J.4
Shostrom, V.K.5
Standop, J.6
Lele, S.M.7
Ouellette, M.8
Pour, P.M.9
Sasson, A.R.10
-
5
-
-
33947225176
-
Identification of candidate molecular markers predicting sensitivity in solid tumors to dasatinib: rationale for patient selection
-
10.1158/0008-5472.CAN-06-3633, 17332353
-
Huang F, Reeves K, Han X, Fairchild C, Platero S, Wong TW, Lee F, Shaw P, Clark E. Identification of candidate molecular markers predicting sensitivity in solid tumors to dasatinib: rationale for patient selection. Cancer Res 2007, 67(5):2226-2238. 10.1158/0008-5472.CAN-06-3633, 17332353.
-
(2007)
Cancer Res
, vol.67
, Issue.5
, pp. 2226-2238
-
-
Huang, F.1
Reeves, K.2
Han, X.3
Fairchild, C.4
Platero, S.5
Wong, T.W.6
Lee, F.7
Shaw, P.8
Clark, E.9
-
6
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
10.1056/NEJMoa021967, 12490681
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002, 347(25):1999-2009. 10.1056/NEJMoa021967, 12490681.
-
(2002)
N Engl J Med
, vol.347
, Issue.25
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
-
7
-
-
20844444779
-
Idiosyncratic drug hepatotoxicity
-
10.1038/nrd1750, 15931258
-
Kaplowitz N. Idiosyncratic drug hepatotoxicity. Nat Rev Drug Discov 2005, 4(6):489-499. 10.1038/nrd1750, 15931258.
-
(2005)
Nat Rev Drug Discov
, vol.4
, Issue.6
, pp. 489-499
-
-
Kaplowitz, N.1
-
8
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
10.1038/415530a, 11823860
-
van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, et al. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002, 415(6871):530-536. 10.1038/415530a, 11823860.
-
(2002)
Nature
, vol.415
, Issue.6871
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
9
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
10.1093/jnci/djk018, 17227998
-
Dupuy A, Simon RM. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 2007, 99(2):147-157. 10.1093/jnci/djk018, 17227998.
-
(2007)
J Natl Cancer Inst
, vol.99
, Issue.2
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.M.2
-
10
-
-
13444249852
-
Prediction of cancer outcome with microarrays: a multiple random validation strategy
-
10.1016/S0140-6736(05)17866-0, 15705458
-
Michiels S, Koscielny S, Hill C. Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 2005, 365(9458):488-492. 10.1016/S0140-6736(05)17866-0, 15705458.
-
(2005)
Lancet
, vol.365
, Issue.9458
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
-
12
-
-
0042822243
-
Using DNA microarrays for diagnostic and prognostic prediction
-
10.1586/14737159.3.5.587, 14510179
-
Simon R. Using DNA microarrays for diagnostic and prognostic prediction. Expert Rev Mol Diagn 2003, 3(5):587-595. 10.1586/14737159.3.5.587, 14510179.
-
(2003)
Expert Rev Mol Diagn
, vol.3
, Issue.5
, pp. 587-595
-
-
Simon, R.1
-
13
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
10.1093/jnci/95.1.14, 12509396
-
Simon R, Radmacher MD, Dobbin K, McShane LM. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 2003, 95(1):14-18. 10.1093/jnci/95.1.14, 12509396.
-
(2003)
J Natl Cancer Inst
, vol.95
, Issue.1
, pp. 14-18
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
14
-
-
1342330535
-
Is cross-validation valid for small-sample microarray classification?
-
10.1093/bioinformatics/btg419, 14960464
-
Braga-Neto UM, Dougherty ER. Is cross-validation valid for small-sample microarray classification?. Bioinformatics 2004, 20(3):374-380. 10.1093/bioinformatics/btg419, 14960464.
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 374-380
-
-
Braga-Neto, U.M.1
Dougherty, E.R.2
-
15
-
-
33644860703
-
Bias in error estimation when using cross-validation for model selection
-
10.1186/1471-2105-7-91, 1397873, 16504092
-
Varma S, Simon R. Bias in error estimation when using cross-validation for model selection. BMC Bioinformatics 2006, 7:91. 10.1186/1471-2105-7-91, 1397873, 16504092.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 91
-
-
Varma, S.1
Simon, R.2
-
16
-
-
33847348449
-
A gene-expression signature to predict survival in breast cancer across independent data sets
-
10.1038/sj.onc.1209920, 16936776
-
Naderi A, Teschendorff AE, Barbosa-Morais NL, Pinder SE, Green AR, Powe DG, Robertson JF, Aparicio S, Ellis IO, Brenton JD, et al. A gene-expression signature to predict survival in breast cancer across independent data sets. Oncogene 2007, 26(10):1507-1516. 10.1038/sj.onc.1209920, 16936776.
-
(2007)
Oncogene
, vol.26
, Issue.10
, pp. 1507-1516
-
-
Naderi, A.1
Teschendorff, A.E.2
Barbosa-Morais, N.L.3
Pinder, S.E.4
Green, A.R.5
Powe, D.G.6
Robertson, J.F.7
Aparicio, S.8
Ellis, I.O.9
Brenton, J.D.10
-
17
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
-
10.1073/pnas.1732912100, 193572, 12917485
-
Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, Martiat P, Fox SB, Harris AL, Liu ET. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc Natl Acad Sci U S A 2003, 100(18):10393-10398. 10.1073/pnas.1732912100, 193572, 12917485.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.18
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.Y.2
McShane, L.M.3
Korn, E.L.4
Long, P.M.5
Jazaeri, A.6
Martiat, P.7
Fox, S.B.8
Harris, A.L.9
Liu, E.T.10
-
18
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, Sieuwerts AM, Look MP, Yang F, Talantov D, Timmermans M, Meijer-van Gelder ME, Yu J, et al. Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 2005, 365(9460):671-679.
-
(2005)
Lancet
, vol.365
, Issue.9460
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
Yang, F.6
Talantov, D.7
Timmermans, M.8
Meijer-van Gelder, M.E.9
Yu, J.10
-
19
-
-
13444282534
-
Outcome signature genes in breast cancer: is there a unique set?
-
10.1093/bioinformatics/bth469, 15308542
-
Ein-Dor L, Kela I, Getz G, Givol D, Domany E. Outcome signature genes in breast cancer: is there a unique set?. Bioinformatics 2005, 21(2):171-178. 10.1093/bioinformatics/bth469, 15308542.
-
(2005)
Bioinformatics
, vol.21
, Issue.2
, pp. 171-178
-
-
Ein-Dor, L.1
Kela, I.2
Getz, G.3
Givol, D.4
Domany, E.5
-
20
-
-
45249128876
-
Combining forecasts: A review and annotated bibliography
-
Clemen R. Combining forecasts: A review and annotated bibliography. Journal of Forecasting 1989, 5:559-583.
-
(1989)
Journal of Forecasting
, vol.5
, pp. 559-583
-
-
Clemen, R.1
-
21
-
-
5444232094
-
Validated QSAR prediction of OH tropospheric degradation of VOCs: splitting into training-test sets and consensus modeling
-
Gramatica P, Pilutti P, Papa E. Validated QSAR prediction of OH tropospheric degradation of VOCs: splitting into training-test sets and consensus modeling. J Chem Inf Comput Sci 2004, 44(5):1794-1802.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, Issue.5
, pp. 1794-1802
-
-
Gramatica, P.1
Pilutti, P.2
Papa, E.3
-
22
-
-
2942596534
-
Ensemble machine learning on gene expression data for cancer classification
-
Tan AC, Gilbert D. Ensemble machine learning on gene expression data for cancer classification. Appl Bioinformatics 2003, 2(3 Suppl):S75-83.
-
(2003)
Appl Bioinformatics
, vol.2
, Issue.3 SUPPL.
-
-
Tan, A.C.1
Gilbert, D.2
-
23
-
-
33846858448
-
Consensus analysis of multiple classifiers using non-repetitive variables: diagnostic application to microarray gene expression data
-
10.1016/j.compbiolchem.2007.01.001, 17303535
-
Su Z, Hong H, Perkins R, Shao X, Cai W, Tong W. Consensus analysis of multiple classifiers using non-repetitive variables: diagnostic application to microarray gene expression data. Comput Biol Chem 2007, 31(1):48-56. 10.1016/j.compbiolchem.2007.01.001, 17303535.
-
(2007)
Comput Biol Chem
, vol.31
, Issue.1
, pp. 48-56
-
-
Su, Z.1
Hong, H.2
Perkins, R.3
Shao, X.4
Cai, W.5
Tong, W.6
-
24
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
10.1038/nbt.1665, 20676074
-
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, et al. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 2010, 28(8):827-838. 10.1038/nbt.1665, 20676074.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.8
, pp. 827-838
-
-
Shi, L.1
Campbell, G.2
Jones, W.D.3
Campagne, F.4
Wen, Z.5
Walker, S.J.6
Su, Z.7
Chu, T.M.8
Goodsaid, F.M.9
Pusztai, L.10
-
25
-
-
34347250516
-
Application of genomic biomarkers to predict increased lung tumor incidence in 2-year rodent cancer bioassays
-
10.1093/toxsci/kfm023, 17311802
-
Thomas RS, Pluta L, Yang L, Halsey TA. Application of genomic biomarkers to predict increased lung tumor incidence in 2-year rodent cancer bioassays. Toxicol Sci 2007, 97(1):55-64. 10.1093/toxsci/kfm023, 17311802.
-
(2007)
Toxicol Sci
, vol.97
, Issue.1
, pp. 55-64
-
-
Thomas, R.S.1
Pluta, L.2
Yang, L.3
Halsey, T.A.4
-
26
-
-
34547881497
-
A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals
-
10.1093/toxsci/kfm156, 17557906
-
Fielden MR, Brennan R, Gollub J. A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals. Toxicol Sci 2007, 99(1):90-100. 10.1093/toxsci/kfm156, 17557906.
-
(2007)
Toxicol Sci
, vol.99
, Issue.1
, pp. 90-100
-
-
Fielden, M.R.1
Brennan, R.2
Gollub, J.3
-
27
-
-
47249149840
-
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
-
10.1186/gb-2008-9-6-r100, 2481421, 18570634
-
Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, et al. Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype. Genome Biol 2008, 9(6):R100. 10.1186/gb-2008-9-6-r100, 2481421, 18570634.
-
(2008)
Genome Biol
, vol.9
, Issue.6
-
-
Lobenhofer, E.K.1
Auman, J.T.2
Blackshear, P.E.3
Boorman, G.A.4
Bushel, P.R.5
Cunningham, M.L.6
Fostel, J.M.7
Gerrish, K.8
Heinloth, A.N.9
Irwin, R.D.10
-
28
-
-
33749030177
-
Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer
-
10.1200/JCO.2006.05.6861, 16896004
-
Hess KR, Anderson K, Symmans WF, Valero V, Ibrahim N, Mejia JA, Booser D, Theriault RL, Buzdar AU, Dempsey PJ, et al. Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer. J Clin Oncol 2006, 24(26):4236-4244. 10.1200/JCO.2006.05.6861, 16896004.
-
(2006)
J Clin Oncol
, vol.24
, Issue.26
, pp. 4236-4244
-
-
Hess, K.R.1
Anderson, K.2
Symmans, W.F.3
Valero, V.4
Ibrahim, N.5
Mejia, J.A.6
Booser, D.7
Theriault, R.L.8
Buzdar, A.U.9
Dempsey, P.J.10
-
29
-
-
33745779502
-
The molecular classification of multiple myeloma
-
10.1182/blood-2005-11-013458, 1895543, 16728703
-
Zhan F, Huang Y, Colla S, Stewart JP, Hanamura I, Gupta S, Epstein J, Yaccoby S, Sawyer J, Burington B, et al. The molecular classification of multiple myeloma. Blood 2006, 108(6):2020-2028. 10.1182/blood-2005-11-013458, 1895543, 16728703.
-
(2006)
Blood
, vol.108
, Issue.6
, pp. 2020-2028
-
-
Zhan, F.1
Huang, Y.2
Colla, S.3
Stewart, J.P.4
Hanamura, I.5
Gupta, S.6
Epstein, J.7
Yaccoby, S.8
Sawyer, J.9
Burington, B.10
-
30
-
-
33947217497
-
A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1
-
10.1182/blood-2006-07-038430, 17105813
-
Shaughnessy JD, Zhan F, Burington BE, Huang Y, Colla S, Hanamura I, Stewart JP, Kordsmeier B, Randolph C, Williams DR, et al. A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1. Blood 2007, 109(6):2276-2284. 10.1182/blood-2006-07-038430, 17105813.
-
(2007)
Blood
, vol.109
, Issue.6
, pp. 2276-2284
-
-
Shaughnessy, J.D.1
Zhan, F.2
Burington, B.E.3
Huang, Y.4
Colla, S.5
Hanamura, I.6
Stewart, J.P.7
Kordsmeier, B.8
Randolph, C.9
Williams, D.R.10
-
31
-
-
33750963337
-
Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification
-
10.1200/JCO.2006.06.1879, 17075126
-
Oberthuer A, Berthold F, Warnat P, Hero B, Kahlert Y, Spitz R, Ernestus K, Konig R, Haas S, Eils R, et al. Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification. J Clin Oncol 2006, 24(31):5070-5078. 10.1200/JCO.2006.06.1879, 17075126.
-
(2006)
J Clin Oncol
, vol.24
, Issue.31
, pp. 5070-5078
-
-
Oberthuer, A.1
Berthold, F.2
Warnat, P.3
Hero, B.4
Kahlert, Y.5
Spitz, R.6
Ernestus, K.7
Konig, R.8
Haas, S.9
Eils, R.10
-
32
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
10.1073/pnas.091062498, 33173, 11309499
-
Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001, 98(9):5116-5121. 10.1073/pnas.091062498, 33173, 11309499.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
33
-
-
84855726604
-
R: A language and environment for statistical computing
-
Vienna, Austria ISBN 3-900051-07-0
-
Team RDC. R: A language and environment for statistical computing. R Foundation for Statistical computing 2010, Vienna, Austria ISBN 3-900051-07-0., http://www.R-project.org
-
(2010)
R Foundation for Statistical computing
-
-
Team, R.D.C.1
-
34
-
-
33746454738
-
KlaR analyzing German business cycle
-
Springer-Verlag, Berlin, Baier, D, Decker, R and Schmitd-Thieme, L
-
Weihs C, Ligges U, Luebke K, Rabbe N. klaR analyzing German business cycle. Data Analysis and Decision Support 2005, 335-343. Springer-Verlag, Berlin, Baier, D, Decker, R and Schmitd-Thieme, L.
-
(2005)
Data Analysis and Decision Support
, pp. 335-343
-
-
Weihs, C.1
Ligges, U.2
Luebke, K.3
Rabbe, N.4
-
36
-
-
33846809281
-
Statistical external validation and consensus modeling: a QSPR case study for Koc prediction
-
10.1016/j.jmgm.2006.06.005, 16890002
-
Gramatica P, Giani E, Papa E. Statistical external validation and consensus modeling: a QSPR case study for Koc prediction. J Mol Graph Model 2007, 25(6):755-766. 10.1016/j.jmgm.2006.06.005, 16890002.
-
(2007)
J Mol Graph Model
, vol.25
, Issue.6
, pp. 755-766
-
-
Gramatica, P.1
Giani, E.2
Papa, E.3
|