Molecular ecology of a facultative swine waste lagoon

Letters in Applied Microbiology

Volumn 48, Issue 4, 2009, Pages 486-492

  Goh, S H M ^a   Mabbett, A N ^a   Welch, J P ^a   Hall, S J ^a   McEwan, A G ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Facultative lagoons; Sulfide oxidation; Sulfur cycle; Thiolamprovum pedioforme

Indexed keywords

BACTERIA; ECOLOGY; FISH; FLUORESCENCE MICROSCOPY; LAKES; MOLECULAR BIOLOGY; REDUCTION; RNA; SULFUR COMPOUNDS;

FACULTATIVE LAGOON; FLUORESCENCE IN SITU HYBRIDIZATION; HYBRIDIZATION ANALYSIS; SULFATE REDUCTION; SULFIDE OXIDATION; SULFUR CYCLES; SULPHATE REDUCING BACTERIA; SWINE WASTE; THIOLAMPROVUM PEDIOFORME; WASTE LAGOONS;

GENES;

ANIMALS; BACTERIA; PATHOGENS; SEWAGE LAGOONS; SOLID WASTES;

BACTERIUM; CARBON CYCLE; CLONE; GENE; LAGOON; METABOLISM; OXIDATION; REDUCTION; RNA; SULFATE; SULFIDE; SULFUR CYCLE; TAXONOMY;

ANIMAL HUSBANDRY; ANIMALS; BACTERIA; CARBON; CHROMATIACEAE; ECOSYSTEM; GENE LIBRARY; GENES, RRNA; HYDROGEN; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SULFATES; SULFUR; SWINE; WASTE DISPOSAL, FLUID; WATER MICROBIOLOGY;

EID: 62149108185     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2009.02560.x     Document Type: Article

References (32)

1. Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. Stahl, D.A. (1990) Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow-cytometry for analysing mixed microbial-populations. Appl Environ Microbiol 56, 1919 1925.
2. Bak, F. Pfennig, N. (1991) Sulfate-reducing bacteria in littoral sediment of Lake Constance. FEMS Microbiol Ecol 85, 43 52.
3. Blankenship, R.E., Madigan, M.T. Bauer, C.E. (1995) Anoxygenic Photosynthetic Bacteria. London : Kluwer Academic Publishers.
4. Conrad, R., Aragno, M. Seiler, W. (1983) Production and consumption of hydrogen in a eutrophic lake. Appl Environ Microbiol 45, 502 510.
5. Cotta, M.A., Whitehead, T.R. Zeltwanger, R.L. (2003) Isolation, characterisation and comparison of bacteria from swine faeces and manure storage pits. Environ Microbiol 5, 737 745.
6. Dhillon, A., Teske, A., Dillon, J., Stahl, D.A. Sogin, M.L. (2003) Molecular characterisation of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69, 2765 2772.
7. Do, Y.S., Schmidt, T.M., Zahn, J.A., Boyd, E.S., de la Mora, A. DiSpirito, A.A. (2003) Role of Rhodobacter sp. strain PS9, a purple non-sulfur photosynthetic bacterium isolated from an anaerobic swine waste lagoon, in odour remediation. Appl Environ Microbiol 69, 1710 1720.
8. Eichler, B. Pfennig, N. (1986) Characterisation of a new platelet-forming purple sulfur bacterium, Amoebobacter pedioformis sp. nov. Arch Microbiol 146, 295 300.
9. Eichler, B. Pfennig, N. (1991) Isolation and characteristics of Thiopedia rosea (neotype). Arch Microbiol 155, 210 216.
10. Friedrich, M.W. (2002) Phylogenetic analysis reveals multiple lateral transfers of adenosine-5 '-phosphosulfate reductase genes among sulfate-reducing microorganisms. J Bacteriol 184, 278 289.
11. van Gemerden, H. (1993) Microbial mats: a joint venture. Mar Geol 113, 3 25.
12. Holm, H.W. Vennes, J.W. (1970) Occurrence of purple sulfur bacteria in a sewage treatment lagoon. Appl Microbiol 19, 988 996.
13. Kim, D.J., Kim, T.K., Choi, E.J., Park, W.C., Kim, T.H., Ahn, D.H., Yuan, Z., Blackall, L. et al. (2004) Fluorescence in situ hybridisation analysis of nitrifiers in piggery wastewater treatment reactors. Water Sci Technol 49, 333 340.
14. Lane, D.J. (1991) Nucleic Acid Techniques in Bacterial Systematics. New York : Wiley.
15. Leser, T.D., Amenuvor, J.Z., Jensen, T.K., Lindecrona, R.H., Boye, M. Moller, K. (2002) Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 68, 673 690.
16. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T. et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363 1371.
17. Manz, W., Amann, R., Ludwig, W., Wagner, M. Schleifer, K.H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Microbiol 15, 593 600.
18. McEwan, A.G. (1994) Photosynthetic electron transport and anaerobic metabolism in purple non-sulfur phototrophic bacteria. Antonie Van Leeuwenhoek 66, 151 164.
19. Nilsson, M.T. Klein, G.O. (1985) Seq-Ed: an interactive computer program for editing, analysis and storage of long DNA sequences. Comput Appl Biosci 1, 29 34.
20. Pfennig, N., Widdel, F. Postgate, J.R. (1982) The bacteria of the sulfur cycle. Philos Trans R Soc Lond B Biol Sci 298, 433 441.
21. Pryde, S.E., Richardson, A.J., Stewart, C.S. Flint, H.J. (1999) Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl Environ Microbiol 65, 5372 5377.
22. Qin, Y.Y., Li, D.T. Yang, H. (2007) Investigation of total bacterial and ammonia-oxidising bacterial community composition in a full-scale aerated submerged biofilm reactor for drinking water pretreatment in China. FEMS Microbiol Lett 268, 126 134.
23. Sambrook, J., Fritsch, E.F. Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. New York : Cold Spring Harbour Laboratory Press.
24. Siyambalapitiya, N. Blackall, L.L. (2005) Discrepancies in the widely applied GAM42α fluorescence in situ hybridisation probe for Gammaproteobacteria. FEMS Microbiol Lett 242, 367 373.
25. Teske, A., Dhillon, A. Sogin, M.L. (2003) Genomic markers of ancient anaerobic microbial pathways: sulfate reduction, methanogenesis, and methane oxidation. Biol Bull 204, 186 191.
26. Thiel, V. Imhoff, J.F. (2003) Phylogenetic identification of bacteria with antimicrobial activities isolated from Mediterranean sponges. Biomol Eng 20, 421 423.
27. Thiele, H.H. (1968) Sulfur metabolism in Thiorhodaceae. IV. Assimilatory reduction of sulfate by Thiocapsa floridana and Chromatium species. Antonie Van Leeuwenhoek J Microbiol 34, 341 349.
28. Wagner, M., Roger, A.J., Flax, J.L., Brusseau, G.A. Stahl, D.A. (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180, 2975 2982.
29. Wagner, M., Loy, A., Klein, M., Lee, N., Ramsing, N.B., Stahl, D.A. Friedrich, M.W. (2005) Functional marker genes for identification of sulfate-reducing prokaryotes. Environ Microbiol 397, 469 489.
30. Wenke, T.L. Vogt, J.C. (1981) Temporal changes in a pink feedlot lagoon. Appl Environ Microbiol 41, 381 385.
31. Whitehead, T.R. Cotta, M.A. (2001) Characterisation and comparison of microbial populations in swine faeces and manure storage pits by 16S rDNA gene sequence analyses. Anaerobe 7, 181 187.
32. Willison, J.C. (1993) Biochemical genetics revisited: the use of mutants to study carbon and nitrogen metabolism in the photosynthetic bacteria. FEMS Microbiol Rev 104, 1 38.