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Volumn 75, Issue 3, 2011, Pages 497-506

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: Many common and few cultivar-dependent taxa

Author keywords

16S rRNA genes; Clone library; Community DNA; PhyloChip; Potato rhizosphere

Indexed keywords

RNA 16S;

EID: 78751687217     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.01025.x     Document Type: Article
Times cited : (185)

References (45)
  • 1
    • 53949089129 scopus 로고    scopus 로고
    • Effects of transgenic fructan-producing potatoes on the community structure of rhizosphere and phyllosphere bacteria
    • Becker R, Behrendt U, Hommel B, Kropf S & Ulrich A (2008) Effects of transgenic fructan-producing potatoes on the community structure of rhizosphere and phyllosphere bacteria. FEMS Microbiol Ecol 66: 411-425.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 411-425
    • Becker, R.1    Behrendt, U.2    Hommel, B.3    Kropf, S.4    Ulrich, A.5
  • 3
    • 61649118780 scopus 로고    scopus 로고
    • Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
    • Berg G & Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68: 1-13.
    • (2009) FEMS Microbiol Ecol , vol.68 , pp. 1-13
    • Berg, G.1    Smalla, K.2
  • 4
    • 0036306048 scopus 로고    scopus 로고
    • Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants
    • Berg G, Roskot N, Steidle A, Eberl L, Zock A & Smalla K (2002) Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl Environ Microb 68: 3328-3338.
    • (2002) Appl Environ Microb , vol.68 , pp. 3328-3338
    • Berg, G.1    Roskot, N.2    Steidle, A.3    Eberl, L.4    Zock, A.5    Smalla, K.6
  • 5
    • 33646003568 scopus 로고    scopus 로고
    • The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site
    • Berg G, Opelt K, Zachow C, Lottmann J, Götz M, Costa R & Smalla K (2006) The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site. FEMS Microbiol Ecol 56: 250-261.
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 250-261
    • Berg, G.1    Opelt, K.2    Zachow, C.3    Lottmann, J.4    Götz, M.5    Costa, R.6    Smalla, K.7
  • 6
    • 35948950775 scopus 로고    scopus 로고
    • Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil
    • Bremer C, Braker G, Matthies D, Reuter A, Engels C & Conrad R (2007) Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil. Appl Environ Microb 73: 6876-6884.
    • (2007) Appl Environ Microb , vol.73 , pp. 6876-6884
    • Bremer, C.1    Braker, G.2    Matthies, D.3    Reuter, A.4    Engels, C.5    Conrad, R.6
  • 7
    • 0036276617 scopus 로고    scopus 로고
    • Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice
    • Briones AM, Okabe S, Umemiya Y, Ramsing N-B, Reichardt W & Okuyama H (2002) Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl Environ Microb 68: 3067-3075.
    • (2002) Appl Environ Microb , vol.68 , pp. 3067-3075
    • Briones, A.M.1    Okabe, S.2    Umemiya, Y.3    Ramsing, N.-B.4    Reichardt, W.5    Okuyama, H.6
  • 8
    • 33748805463 scopus 로고    scopus 로고
    • Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    • Brodie EL, DeSantis TZ, Joyner DC et al. (2006) Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microb 72: 6288-6298.
    • (2006) Appl Environ Microb , vol.72 , pp. 6288-6298
    • Brodie, E.L.1    DeSantis, T.Z.2    Joyner, D.C.3
  • 10
    • 33645977196 scopus 로고    scopus 로고
    • Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds
    • Costa R, Götz M, Mrotzek N, Lottmann J, Berg G & Smalla K (2006) Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol Ecol 56: 236-249.
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 236-249
    • Costa, R.1    Götz, M.2    Mrotzek, N.3    Lottmann, J.4    Berg, G.5    Smalla, K.6
  • 12
    • 67549086723 scopus 로고    scopus 로고
    • Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland
    • Cruz-Martínez K, Suttle KB, Brodie EL, Power ME, Andersen GL & Banfield JF (2009) Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J 3: 738-744.
    • (2009) ISME J , vol.3 , pp. 738-744
    • Cruz-Martínez, K.1    Suttle, K.B.2    Brodie, E.L.3    Power, M.E.4    Andersen, G.L.5    Banfield, J.F.6
  • 14
    • 34248159346 scopus 로고    scopus 로고
    • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
    • DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM & Andersen GL (2007) High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53: 371-383.
    • (2007) Microb Ecol , vol.53 , pp. 371-383
    • DeSantis, T.Z.1    Brodie, E.L.2    Moberg, J.P.3    Zubieta, I.X.4    Piceno, Y.M.5    Andersen, G.L.6
  • 15
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to fresh water bacterial communities
    • Fisher MM & Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to fresh water bacterial communities. Appl Environ Microb 65: 4630-4636.
    • (1999) Appl Environ Microb , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 18
    • 15944409255 scopus 로고    scopus 로고
    • Biological control of soil-borne pathogens by fluorescent pseudomonads
    • Haas D & Défago G (2005) Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol 3: 307-319.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 307-319
    • Haas, D.1    Défago, G.2
  • 20
    • 0036196294 scopus 로고    scopus 로고
    • Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors
    • Heuer H, Kroppenstedt RM, Lottmann J, Berg G & Smalla K (2002) Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl Environ Microb 68: 1325-1335.
    • (2002) Appl Environ Microb , vol.68 , pp. 1325-1335
    • Heuer, H.1    Kroppenstedt, R.M.2    Lottmann, J.3    Berg, G.4    Smalla, K.5
  • 22
    • 70350343544 scopus 로고    scopus 로고
    • Induction of intestinal Th17 cells by segmented filamentous bacteria
    • Ivanov II, Atarashi K, Manel N et al. (2009) Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139: 485-498.
    • (2009) Cell , vol.139 , pp. 485-498
    • Ivanov, I.I.1    Atarashi, K.2    Manel, N.3
  • 23
    • 0034888778 scopus 로고    scopus 로고
    • Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (cv. Westar) employing cultivation-dependent and cultivation-independent approaches
    • Kaiser O, Pühler A & Selbitschka W (2001) Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (cv. Westar) employing cultivation-dependent and cultivation-independent approaches. Microb Ecol 42: 136-149.
    • (2001) Microb Ecol , vol.42 , pp. 136-149
    • Kaiser, O.1    Pühler, A.2    Selbitschka, W.3
  • 24
    • 0036418046 scopus 로고    scopus 로고
    • Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms
    • Kowalchuk GA, Buma DS, de Boer W, Klinkhamer PGL & Van Veen JA (2002) Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie van Leeuwenhoek 81: 509-520.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 509-520
    • Kowalchuk, G.A.1    Buma, D.S.2    de Boer, W.3    Klinkhamer, P.G.L.4    Van Veen, J.A.5
  • 26
    • 0028985740 scopus 로고
    • Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads
    • Lemanceau P, Corberand T, Gardan L, Latour X, Laguerre G, Boeufgras J-M & Alabouvette C (1995) Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads. Appl Environ Microb 61: 1004-1012.
    • (1995) Appl Environ Microb , vol.61 , pp. 1004-1012
    • Lemanceau, P.1    Corberand, T.2    Gardan, L.3    Latour, X.4    Laguerre, G.5    Boeufgras, J.-M.6    Alabouvette, C.7
  • 27
    • 0033929066 scopus 로고    scopus 로고
    • Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community
    • Lottmann J, Heuer H, de Vries J, Mahn A, Düring K, Wackernagel W, Smalla K & Berg G (2000) Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community. FEMS Microbiol Ecol 33: 41-49.
    • (2000) FEMS Microbiol Ecol , vol.33 , pp. 41-49
    • Lottmann, J.1    Heuer, H.2    de Vries, J.3    Mahn, A.4    Düring, K.5    Wackernagel, W.6    Smalla, K.7    Berg, G.8
  • 28
    • 77955426485 scopus 로고    scopus 로고
    • Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in potato roots
    • Manter DK, Delgado JA, Holm DG & Stong RA (2010) Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in potato roots. Microb Ecol 60: 157-166.
    • (2010) Microb Ecol , vol.60 , pp. 157-166
    • Manter, D.K.1    Delgado, J.A.2    Holm, D.G.3    Stong, R.A.4
  • 29
    • 0034851136 scopus 로고    scopus 로고
    • Soil and plant specific effects on bacterial community composition in the rhizosphere
    • Marschner P, Yang C-H, Lieberei R & Crowley DE (2001) Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol Biochem 33: 1437-1445.
    • (2001) Soil Biol Biochem , vol.33 , pp. 1437-1445
    • Marschner, P.1    Yang, C.-H.2    Lieberei, R.3    Crowley, D.E.4
  • 30
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig AE, Glover LA & Prosser JI (1999) Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microb 65: 1721-1730.
    • (1999) Appl Environ Microb , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 31
    • 14644399291 scopus 로고    scopus 로고
    • Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi
    • Milling A, Smalla K, Maidl FX, Schloter M & Munch JC (2004) Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266: 23-39.
    • (2004) Plant Soil , vol.266 , pp. 23-39
    • Milling, A.1    Smalla, K.2    Maidl, F.X.3    Schloter, M.4    Munch, J.C.5
  • 32
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G & Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73: 127-141.
    • (1998) Antonie van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 34
    • 33645961598 scopus 로고    scopus 로고
    • Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure
    • Rasche F, Hödl V, Poll C, Kandeler E, Gerzabek MH, Van Elsas JD & Sessitsch A (2006) Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure. FEMS Microbiol Ecol 56: 219-235.
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 219-235
    • Rasche, F.1    Hödl, V.2    Poll, C.3    Kandeler, E.4    Gerzabek, M.H.5    Van Elsas, J.D.6    Sessitsch, A.7
  • 36
    • 33745134693 scopus 로고    scopus 로고
    • Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
    • Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y & Grundmann GL (2006) Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microb 72: 4302-4312.
    • (2006) Appl Environ Microb , vol.72 , pp. 4302-4312
    • Sanguin, H.1    Remenant, B.2    Dechesne, A.3    Thioulouse, J.4    Vogel, T.M.5    Nesme, X.6    Moënne-Loccoz, Y.7    Grundmann, G.L.8
  • 39
    • 78751686743 scopus 로고    scopus 로고
    • Plant Pathogenic Bacteria - Genomics and Molecular Biology
    • Jackson RW, ed).Caister Academic Press, Norfolk, UK.
    • Stavrinides J (2009) Origin and evolution of phytopathogenic bacteria. Plant Pathogenic Bacteria - Genomics and Molecular Biology (Jackson RW, ed), pp. 1-35. Caister Academic Press, Norfolk, UK.
    • (2009) Origin and evolution of phytopathogenic bacteria , pp. 1-35
    • Stavrinides, J.1
  • 40
    • 36749043174 scopus 로고    scopus 로고
    • Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA
    • Vandenkoornhuyse P, Mahe S, Ineson P & Staddon P (2007) Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA. P Natl Acad Sci USA 104: 16970-16975.
    • (2007) P Natl Acad Sci USA , vol.104 , pp. 16970-16975
    • Vandenkoornhuyse, P.1    Mahe, S.2    Ineson, P.3    Staddon, P.4
  • 41
    • 42149112411 scopus 로고    scopus 로고
    • Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)
    • Van Overbeek L & Van Elsas JD (2008) Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.). FEMS Microbiol Ecol 64: 283-296.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 283-296
    • Van Overbeek, L.1    Van Elsas, J.D.2
  • 42
    • 67149088390 scopus 로고    scopus 로고
    • Rhizosphere microbial communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differed less than those of different potato cultivars
    • Weinert N, Meincke R, Gottwald C, Heuer H, Schloter M, Berg G & Smalla K (2009) Rhizosphere microbial communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differed less than those of different potato cultivars. Appl Environ Microb 75: 3859-3865.
    • (2009) Appl Environ Microb , vol.75 , pp. 3859-3865
    • Weinert, N.1    Meincke, R.2    Gottwald, C.3    Heuer, H.4    Schloter, M.5    Berg, G.6    Smalla, K.7
  • 43
    • 72149132804 scopus 로고    scopus 로고
    • Effects of genetically modified potatoes with increased zeaxanthin content on the abundance and diversity of rhizobacteria with in vitro antagonistic activity do not exceed natural variability among cultivars
    • Weinert N, Meincke R, Gottwald C, Radl V, Dong X, Schloter M, Berg G & Smalla K (2010) Effects of genetically modified potatoes with increased zeaxanthin content on the abundance and diversity of rhizobacteria with in vitro antagonistic activity do not exceed natural variability among cultivars. Plant Soil 326: 437-452.
    • (2010) Plant Soil , vol.326 , pp. 437-452
    • Weinert, N.1    Meincke, R.2    Gottwald, C.3    Radl, V.4    Dong, X.5    Schloter, M.6    Berg, G.7    Smalla, K.8
  • 44
    • 33846477184 scopus 로고    scopus 로고
    • Pseudomonas biocontrol agents of soilborne pathogens
    • Phytopathology.
    • Weller DM (2007) Pseudomonas biocontrol agents of soilborne pathogens: looking back over 30 years. Phytopathology 97: 250-256.
    • (2007) looking back over 30 years , vol.97 , pp. 250-256
    • Weller, D.M.1
  • 45
    • 57449114038 scopus 로고    scopus 로고
    • 13C labeling to assess C-partitioning in transgenic and non-transgenic (parental) rice and their rhizosphere soil microbial communities
    • 13C labeling to assess C-partitioning in transgenic and non-transgenic (parental) rice and their rhizosphere soil microbial communities. FEMS Microbiol Ecol 67: 93-102.
    • (2008) FEMS Microbiol Ecol , vol.67 , pp. 93-102
    • Wu, W.X.1    Liu, W.2    Lu, H.H.3    Chen, Y.X.4    Devare, M.5    Thies, J.6


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