-
1
-
-
12244309467
-
Widespread occurrence of a domestic dog mitochondrial DNA haplotype in southeastern US coyotes
-
Adams JR, Leonard JA, Waits LP (2003) Widespread occurrence of a domestic dog mitochondrial DNA haplotype in southeastern US coyotes. Molecular Ecology, 12, 541-546.
-
(2003)
Molecular Ecology
, vol.12
, pp. 541-546
-
-
Adams, J.R.1
Leonard, J.A.2
Waits, L.P.3
-
2
-
-
33646894449
-
Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group
-
Bachtrog D, Thornton K, Clark A, Andolfatto P (2006) Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution, 60, 292-302.
-
(2006)
Evolution
, vol.60
, pp. 292-302
-
-
Bachtrog, D.1
Thornton, K.2
Clark, A.3
Andolfatto, P.4
-
3
-
-
65349169533
-
Countering criticisms of single mitochondrial DNA gene barcoding in birds
-
Baker AJ, Tavares ES, Elbourne RF (2009) Countering criticisms of single mitochondrial DNA gene barcoding in birds. Molecular Ecology Resources, 9, 257-267.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 257-267
-
-
Baker, A.J.1
Tavares, E.S.2
Elbourne, R.F.3
-
4
-
-
1642285792
-
The incomplete natural history of mitochondria
-
Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
-
(2004)
Molecular Ecology
, vol.13
, pp. 729-744
-
-
Ballard, J.W.O.1
Whitlock, M.C.2
-
5
-
-
33646253454
-
Population size does not influence mitochondrial genetic diversity in animals
-
Bazin E, Glemin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science, 312, 570-572.
-
(2006)
Science
, vol.312
, pp. 570-572
-
-
Bazin, E.1
Glemin, S.2
Galtier, N.3
-
6
-
-
34748864136
-
Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome
-
Berlin S, Tomaras D, Charlesworth B (2007) Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome. Heredity, 99, 389-396.
-
(2007)
Heredity
, vol.99
, pp. 389-396
-
-
Berlin, S.1
Tomaras, D.2
Charlesworth, B.3
-
7
-
-
33845286930
-
Mitochondrial DNA and population size
-
Berry OF (2006) Mitochondrial DNA and population size. Science, 314, 1388-1390.
-
(2006)
Science
, vol.314
, pp. 1388-1390
-
-
Berry, O.F.1
-
8
-
-
0346364657
-
Amino acid properties and consequences of substitutions
-
(eds Barnes MR & Gray IC) Wiley, Chichester.
-
Betts MJ, Russell RB (2003) Amino acid properties and consequences of substitutions. In: Bioinformatics for Geneticists (eds Barnes MR & Gray IC), p. 408. Wiley, Chichester.
-
(2003)
Bioinformatics for Geneticists
, pp. 408
-
-
Betts, M.J.1
Russell, R.B.2
-
9
-
-
33748048774
-
Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes
-
Broughton RE, Reneau PC (2006) Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes. Molecular Biology and Evolution, 23, 1516-1524.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 1516-1524
-
-
Broughton, R.E.1
Reneau, P.C.2
-
10
-
-
33845263234
-
The sorry state of F-2 hybrids: consequences of rapid mitochondrial DNA evolution in allopatric populations
-
Burton RS, Ellison CK, Harrison JS (2006) The sorry state of F-2 hybrids: consequences of rapid mitochondrial DNA evolution in allopatric populations. American Naturalist, 168, S14-S24.
-
(2006)
American Naturalist
, vol.168
-
-
Burton, R.S.1
Ellison, C.K.2
Harrison, J.S.3
-
11
-
-
43149113681
-
Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach
-
Clare EL, Kerr KCR, von Konigslow TE, Wilson JJ, Hebert PDN (2008) Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach. Journal of Molecular Evolution, 66, 362-367.
-
(2008)
Journal of Molecular Evolution
, vol.66
, pp. 362-367
-
-
Clare, E.L.1
Kerr, K.C.R.2
von Konigslow, T.E.3
Wilson, J.J.4
Hebert, P.D.N.5
-
12
-
-
0025343497
-
Sequence and gene organization of the chicken mitochondrial genome-a novel gene order in higher vertebrates
-
Desjardins P, Morais R (1990) Sequence and gene organization of the chicken mitochondrial genome-a novel gene order in higher vertebrates. Journal of Molecular Biology, 212, 599-634.
-
(1990)
Journal of Molecular Biology
, vol.212
, pp. 599-634
-
-
Desjardins, P.1
Morais, R.2
-
14
-
-
48449101412
-
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites
-
Egea R, Casillas S, Barbadilla A (2008) Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. Nucleic Acids Research, 36, W157-W162.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Egea, R.1
Casillas, S.2
Barbadilla, A.3
-
15
-
-
50549092313
-
Four years of DNA barcoding: current advances and prospects
-
Frezal L, Leblois R (2008) Four years of DNA barcoding: current advances and prospects. Infection Genetics and Evolution, 8, 727-736.
-
(2008)
Infection Genetics and Evolution
, vol.8
, pp. 727-736
-
-
Frezal, L.1
Leblois, R.2
-
16
-
-
0032693254
-
Mildly deleterious mutations in avian mitochondrial dna: evidence from neutraliy tests
-
Fry AJ (1999) Mildly deleterious mutations in avian mitochondrial dna: evidence from neutraliy tests. Evolution, 53, 1617-1620.
-
(1999)
Evolution
, vol.53
, pp. 1617-1620
-
-
Fry, A.J.1
-
17
-
-
0034086970
-
Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
-
Galtier N, Depaulis F, Barton NH (2000) Detecting bottlenecks and selective sweeps from DNA sequence polymorphism. Genetics, 155, 981-987.
-
(2000)
Genetics
, vol.155
, pp. 981-987
-
-
Galtier, N.1
Depaulis, F.2
Barton, N.H.3
-
18
-
-
0035542729
-
Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes?
-
Gerber AS, Loggins R, Kumar S, Dowling TE (2001) Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes? Annual Review of Genetics, 35, 539-566.
-
(2001)
Annual Review of Genetics
, vol.35
, pp. 539-566
-
-
Gerber, A.S.1
Loggins, R.2
Kumar, S.3
Dowling, T.E.4
-
19
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
Hackett SJ, Kimball RT, Reddy S et al. (2008) A phylogenomic study of birds reveals their evolutionary history. Science, 320, 1763-1768.
-
(2008)
Science
, vol.320
, pp. 1763-1768
-
-
Hackett, S.J.1
Kimball, R.T.2
Reddy, S.3
-
20
-
-
0031729188
-
Preponderance of slightly deleterious polymorphism in mitochondrial DNA: nonsynonymous/synonymous rate ratio is much higher within species than between species
-
Hasegawa M, Cao Y, Yang ZH (1998) Preponderance of slightly deleterious polymorphism in mitochondrial DNA: nonsynonymous/synonymous rate ratio is much higher within species than between species. Molecular Biology and Evolution, 15, 1499-1505.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 1499-1505
-
-
Hasegawa, M.1
Cao, Y.2
Yang, Z.H.3
-
21
-
-
0018988907
-
Hitchhiking: a comparison of linkage and partial selfing
-
Hedrick PW (1980) Hitchhiking: a comparison of linkage and partial selfing. Genetics, 94, 791-808.
-
(1980)
Genetics
, vol.94
, pp. 791-808
-
-
Hedrick, P.W.1
-
22
-
-
33846532499
-
DNA barcoding will often fail to discover new animal species over broad parameter space
-
Hickerson MJ, Meyer CP, Moritz C (2006) DNA barcoding will often fail to discover new animal species over broad parameter space. Systematic Biology, 55, 729-739.
-
(2006)
Systematic Biology
, vol.55
, pp. 729-739
-
-
Hickerson, M.J.1
Meyer, C.P.2
Moritz, C.3
-
23
-
-
0023517601
-
The primary structures of the major and minor hemoglobin components of adult Andean goose (Chloephaga melanoptera, Anatidae)-the mutation leu-ser in position 55 of the beta-chains
-
Hiebl I, Braunitzer G, Schneeganss D (1987) The primary structures of the major and minor hemoglobin components of adult Andean goose (Chloephaga melanoptera, Anatidae)-the mutation leu-ser in position 55 of the beta-chains. Biological Chemistry Hoppe-Seyler, 368, 1559-1569.
-
(1987)
Biological Chemistry Hoppe-Seyler
, vol.368
, pp. 1559-1569
-
-
Hiebl, I.1
Braunitzer, G.2
Schneeganss, D.3
-
24
-
-
70349210121
-
Mitochondrial introgression and replacement between yellowhammers (Emberiza citrinella) and pine buntings (E. leucocephalos; Aves, Passeriformes)
-
Irwin DE, Rubstov AS, Panov EV (2009) Mitochondrial introgression and replacement between yellowhammers (Emberiza citrinella) and pine buntings (E. leucocephalos; Aves, Passeriformes). Biological Journal of the Linnean Society, 98, 422-438.
-
(2009)
Biological Journal of the Linnean Society
, vol.98
, pp. 422-438
-
-
Irwin, D.E.1
Rubstov, A.S.2
Panov, E.V.3
-
26
-
-
34447127560
-
Comprehensive DNA barcoding coverage of North American birds
-
Kerr KCR, Stoeckle MY, Dove CJ et al. (2007) Comprehensive DNA barcoding coverage of North American birds. Molecular Ecology Notes, 7, 535-543.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 535-543
-
-
Kerr, K.C.R.1
Stoeckle, M.Y.2
Dove, C.J.3
-
27
-
-
73449120768
-
Filling the gap-COI barcode resolution in eastern Palearctic birds
-
doi:10.1186/1742-9994-6-29.
-
Kerr KCR, Birks SM, Kalyakin MV et al. (2009a) Filling the gap-COI barcode resolution in eastern Palearctic birds. Frontiers in Zoology, 6, 29. doi:10.1186/1742-9994-6-29.
-
(2009)
Frontiers in Zoology
, vol.6
, pp. 29
-
-
Kerr, K.C.R.1
Birks, S.M.2
Kalyakin, M.V.3
-
28
-
-
84887212625
-
Probing evolutionary patterns in Neotropical birds through DNA barcodes
-
Kerr KCR, Lijtmaer DA, Barreira AS, Hebert PDN, Tubaro PL (2009b) Probing evolutionary patterns in Neotropical birds through DNA barcodes. PLoS ONE, 4, 6.
-
(2009)
PLoS ONE
, vol.4
, pp. 6
-
-
Kerr, K.C.R.1
Lijtmaer, D.A.2
Barreira, A.S.3
Hebert, P.D.N.4
Tubaro, P.L.5
-
29
-
-
0027450803
-
Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
-
Langley CH, Macdonald J, Miyashita N, Aguade M (1993) Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans. Proceedings of the National Academy of Sciences of the United States of America, 90, 1800-1803.
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, pp. 1800-1803
-
-
Langley, C.H.1
Macdonald, J.2
Miyashita, N.3
Aguade, M.4
-
30
-
-
0025955981
-
Introgression of coyote mitochondrial DNA into sympatric North American gray wolf populations
-
Lehman N, Eisenhawer A, Hansen K et al. (1991) Introgression of coyote mitochondrial DNA into sympatric North American gray wolf populations. Evolution, 45, 104-119.
-
(1991)
Evolution
, vol.45
, pp. 104-119
-
-
Lehman, N.1
Eisenhawer, A.2
Hansen, K.3
-
31
-
-
0035207914
-
The structure of greylag goose oxy haemoglobin: the roles of four mutations compared with bar-headed goose haemoglobin
-
Liang YH, Liu XZ, Liu SH, Lu GY (2001) The structure of greylag goose oxy haemoglobin: the roles of four mutations compared with bar-headed goose haemoglobin. Acta Crystallographica Section D-Biological Crystallography, 57, 1850-1856.
-
(2001)
Acta Crystallographica Section D-Biological Crystallography
, vol.57
, pp. 1850-1856
-
-
Liang, Y.H.1
Liu, X.Z.2
Liu, S.H.3
Lu, G.Y.4
-
32
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
33
-
-
0027384944
-
A method for calibrating molecular clocks and its application to animal mitochondrial DNA
-
Lynch M, Jarrell PE (1993) A method for calibrating molecular clocks and its application to animal mitochondrial DNA. Genetics, 135, 1197-1208.
-
(1993)
Genetics
, vol.135
, pp. 1197-1208
-
-
Lynch, M.1
Jarrell, P.E.2
-
34
-
-
60149099862
-
Near neutrality, rate heterogeneity, and linkage govern mitochondrial genome evolution in Atlantic Cod (Gadus morhua) and other gadine fish
-
Marshall HD, Coulson MW, Carr SM (2009) Near neutrality, rate heterogeneity, and linkage govern mitochondrial genome evolution in Atlantic Cod (Gadus morhua) and other gadine fish. Molecular Biology and Evolution, 26, 579-589.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 579-589
-
-
Marshall, H.D.1
Coulson, M.W.2
Carr, S.M.3
-
36
-
-
43149105019
-
DNA barcodes provide a quick preview of mitochondrial genome composition
-
Min XJ, Hickey DA (2007) DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS ONE, 2, 5.
-
(2007)
PLoS ONE
, vol.2
, pp. 5
-
-
Min, X.J.1
Hickey, D.A.2
-
37
-
-
0031760392
-
An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles
-
Mindell DP, Sorenson MD, Dimcheff DE (1998) An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Molecular Biology and Evolution, 15, 1568-1571.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 1568-1571
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
-
39
-
-
34249083225
-
Comment on "Population size does not influence mitochondrial genetic diversity in animals"
-
Mulligan CJ, Kitchen A, Miyamoto MM (2006) Comment on "Population size does not influence mitochondrial genetic diversity in animals". Science, 314, 1390.
-
(2006)
Science
, vol.314
, pp. 1390
-
-
Mulligan, C.J.1
Kitchen, A.2
Miyamoto, M.M.3
-
42
-
-
33144483078
-
Transitions to asexuality result in excess amino acid substitutions
-
Paland S, Lynch M (2006) Transitions to asexuality result in excess amino acid substitutions. Science, 311, 990-992.
-
(2006)
Science
, vol.311
, pp. 990-992
-
-
Paland, S.1
Lynch, M.2
-
43
-
-
6344223583
-
Predicting sampling saturation of mtDNA haplotypes: an application to an enlarged Portuguese database
-
Pereira L, Cunha C, Amorim A (2004) Predicting sampling saturation of mtDNA haplotypes: an application to an enlarged Portuguese database. International Journal of Legal Medicine, 118, 132-136.
-
(2004)
International Journal of Legal Medicine
, vol.118
, pp. 132-136
-
-
Pereira, L.1
Cunha, C.2
Amorim, A.3
-
44
-
-
0030000951
-
Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans
-
Rand DM, Kann LM (1996) Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Molecular Biology and Evolution, 13, 735-748.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 735-748
-
-
Rand, D.M.1
Kann, L.M.2
-
45
-
-
7344244917
-
Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA
-
Rand DM, Kann LM (1998) Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA. Genetica, 102-3, 393-407.
-
(1998)
Genetica
, vol.3-102
, pp. 393-407
-
-
Rand, D.M.1
Kann, L.M.2
-
47
-
-
0035056971
-
Evolution of nuclear- and mitochondrial-encoded subunit interaction in cytochrome c oxidase
-
Schmidt TR, Wu W, Goodman M, Grossman LI (2001) Evolution of nuclear- and mitochondrial-encoded subunit interaction in cytochrome c oxidase. Molecular Biology and Evolution, 18, 563-569.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 563-569
-
-
Schmidt, T.R.1
Wu, W.2
Goodman, M.3
Grossman, L.I.4
-
48
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
51
-
-
0029942862
-
The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 angstrom
-
Tsukihara T, Aoyama H, Yamashita E et al. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 angstrom. Science, 272, 1136-1144.
-
(1996)
Science
, vol.272
, pp. 1136-1144
-
-
Tsukihara, T.1
Aoyama, H.2
Yamashita, E.3
-
52
-
-
36148966864
-
Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context
-
Wang ZO, Pollock DD (2007) Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context. Journal of Molecular Evolution, 65, 485-495.
-
(2007)
Journal of Molecular Evolution
, vol.65
, pp. 485-495
-
-
Wang, Z.O.1
Pollock, D.D.2
-
53
-
-
33845340825
-
Mitochondrial DNA and population size
-
Wares JP, Barber PH, Ross-Ibarra J, Sotka EE, Toonen RJ (2006) Mitochondrial DNA and population size. Science, 314, 1388-1389.
-
(2006)
Science
, vol.314
, pp. 1388-1389
-
-
Wares, J.P.1
Barber, P.H.2
Ross-Ibarra, J.3
Sotka, E.E.4
Toonen, R.J.5
-
54
-
-
0031597553
-
The ghost of hybrids past: fixation of arctic charr (Salvelinus alpinus) mitochondrial DNA in an introgressed population of lake trout (S. namaycush)
-
Wilson CC, Bernatchez L (1998) The ghost of hybrids past: fixation of arctic charr (Salvelinus alpinus) mitochondrial DNA in an introgressed population of lake trout (S. namaycush). Molecular Ecology, 7, 127-132.
-
(1998)
Molecular Ecology
, vol.7
, pp. 127-132
-
-
Wilson, C.C.1
Bernatchez, L.2
-
55
-
-
0031908203
-
Departure from neutrality at the mitochondrial NADH dehydrogenase subunit 2 gene in humans, but not in chimpanzees
-
Wise CA, Sraml M, Easteal S (1998) Departure from neutrality at the mitochondrial NADH dehydrogenase subunit 2 gene in humans, but not in chimpanzees. Genetics, 148, 409-421.
-
(1998)
Genetics
, vol.148
, pp. 409-421
-
-
Wise, C.A.1
Sraml, M.2
Easteal, S.3
-
56
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang ZH (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.H.1
-
57
-
-
17044410142
-
Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies
-
Zink RM (2005) Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies. Proceedings of the Royal Society of London Series B-Biological Sciences, 272, 71-78.
-
(2005)
Proceedings of the Royal Society of London Series B-Biological Sciences
, vol.272
, pp. 71-78
-
-
Zink, R.M.1
-
58
-
-
33746774640
-
Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea
-
Zink RM, Drovetski SV, Rohwer S (2006) Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea. Molecular Phylogenetics and Evolution, 40, 679-686.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 679-686
-
-
Zink, R.M.1
Drovetski, S.V.2
Rohwer, S.3
|