메뉴 건너뛰기




Volumn 419, Issue 2, 2011, Pages 161-167

Detecting and resolving position-dependent temperature effects in real-time quantitative polymerase chain reaction

Author keywords

Positional effects; Precision; Real time quantitative PCR; Temperature effects

Indexed keywords

DIAGNOSIS; INSTRUMENT ERRORS; INVERSE PROBLEMS; SYSTEMATIC ERRORS; TEMPERATURE DISTRIBUTION; THERMAL EFFECTS;

EID: 80054074543     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2011.08.041     Document Type: Article
Times cited : (5)

References (33)
  • 3
    • 33847643776 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time RT-PCR
    • T. Nolan, R.E. Hands, and S.A. Bustin Quantification of mRNA using real-time RT-PCR Nat. Protoc. 1 2006 1559 1582
    • (2006) Nat. Protoc. , vol.1 , pp. 1559-1582
    • Nolan, T.1    Hands, R.E.2    Bustin, S.A.3
  • 4
    • 26844512816 scopus 로고    scopus 로고
    • Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
    • S.A. Bustin, and R. Mueller Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis Clin. Sci. (Lond.) 109 2005 365 379
    • (2005) Clin. Sci. (Lond.) , vol.109 , pp. 365-379
    • Bustin, S.A.1    Mueller, R.2
  • 6
    • 33750430852 scopus 로고    scopus 로고
    • Detection of exon deletions within an entire gene (CFTR) by relative quantification on the LightCycler
    • M. Schneider, F. Joncourt, J. Sanz, T. von Kanel, and S. Gallati Detection of exon deletions within an entire gene (CFTR) by relative quantification on the LightCycler Clin. Chem. 52 2006 2005 2012
    • (2006) Clin. Chem. , vol.52 , pp. 2005-2012
    • Schneider, M.1    Joncourt, F.2    Sanz, J.3    Von Kanel, T.4    Gallati, S.5
  • 7
    • 28544449472 scopus 로고    scopus 로고
    • The use of real-time PCR methods in DNA sequence variation analysis
    • N.J. Gibson The use of real-time PCR methods in DNA sequence variation analysis Clin. Chim. Acta 363 2006 32 47
    • (2006) Clin. Chim. Acta , vol.363 , pp. 32-47
    • Gibson, N.J.1
  • 8
    • 40449105358 scopus 로고    scopus 로고
    • Restriction site-specific methylation studies of imprinted genes with quantitative real-time PCR
    • S. Bruce, K. Hannula-Jouppi, C.M. Lindgren, M. Lipsanen-Nyman, and J. Kere Restriction site-specific methylation studies of imprinted genes with quantitative real-time PCR Clin. Chem. 54 2008 491 499
    • (2008) Clin. Chem. , vol.54 , pp. 491-499
    • Bruce, S.1    Hannula-Jouppi, K.2    Lindgren, C.M.3    Lipsanen-Nyman, M.4    Kere, J.5
  • 9
    • 33846107211 scopus 로고    scopus 로고
    • Evaluation of a quantitative DNA methylation analysis technique using methylation-sensitive/dependent restriction enzymes and real-time PCR
    • C.C. Oakes, S. La Salle, B. Robaire, and J.M. Trasler Evaluation of a quantitative DNA methylation analysis technique using methylation-sensitive/ dependent restriction enzymes and real-time PCR Epigenetics 1 2006 146 152
    • (2006) Epigenetics , vol.1 , pp. 146-152
    • Oakes, C.C.1    La Salle, S.2    Robaire, B.3    Trasler, J.M.4
  • 11
    • 30944451346 scopus 로고    scopus 로고
    • Nucleic acid amplification-based techniques for pathogen detection and identification
    • P.T. Monis, and S. Giglio Nucleic acid amplification-based techniques for pathogen detection and identification Infect. Genet. Evol. 6 2006 2 12
    • (2006) Infect. Genet. Evol. , vol.6 , pp. 2-12
    • Monis, P.T.1    Giglio, S.2
  • 14
    • 3543097554 scopus 로고    scopus 로고
    • Gene expression from the aneuploid chromosome in a trisomy mouse model of Down syndrome
    • R. Lyle, C. Gehrig, C. Neergaard-Henrichsen, S. Deutsch, and S.E. Antonarakis Gene expression from the aneuploid chromosome in a trisomy mouse model of Down syndrome Genome Res. 14 2004 1268 1274
    • (2004) Genome Res. , vol.14 , pp. 1268-1274
    • Lyle, R.1    Gehrig, C.2    Neergaard-Henrichsen, C.3    Deutsch, S.4    Antonarakis, S.E.5
  • 15
    • 66549129231 scopus 로고    scopus 로고
    • Reliability of real-time reverse-transcription PCR in clinical diagnostics: Gold standard or substandard?
    • J. Murphy, and S.A. Bustin Reliability of real-time reverse-transcription PCR in clinical diagnostics: gold standard or substandard? Expert Rev. Mol. Diagn. 9 2009 187 197
    • (2009) Expert Rev. Mol. Diagn. , vol.9 , pp. 187-197
    • Murphy, J.1    Bustin, S.A.2
  • 16
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation: Strategies and considerations
    • J. Huggett, K. Dheda, S. Bustin, and A. Zumla Real-time RT-PCR normalisation: strategies and considerations Genes Immun. 6 2005 279 284
    • (2005) Genes Immun. , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 17
    • 14044265394 scopus 로고    scopus 로고
    • Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction
    • S.A. Bustin, and T. Nolan Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction J. Biomol. Technol. 15 2004 155 166
    • (2004) J. Biomol. Technol. , vol.15 , pp. 155-166
    • Bustin, S.A.1    Nolan, T.2
  • 18
    • 33644975004 scopus 로고    scopus 로고
    • RNA integrity and the effect on the real-time qRT-PCR performance
    • S. Fleige, and M.W. Pfaffl RNA integrity and the effect on the real-time qRT-PCR performance Mol. Aspects Med. 27 2006 126 139
    • (2006) Mol. Aspects Med. , vol.27 , pp. 126-139
    • Fleige, S.1    Pfaffl, M.W.2
  • 19
    • 1542328972 scopus 로고    scopus 로고
    • Properties of the reverse transcription reaction in mRNA quantification
    • A. Stahlberg, J. Hakansson, X. Xian, H. Semb, and M. Kubista Properties of the reverse transcription reaction in mRNA quantification Clin. Chem. 50 2004 509 515
    • (2004) Clin. Chem. , vol.50 , pp. 509-515
    • Stahlberg, A.1    Hakansson, J.2    Xian, X.3    Semb, H.4    Kubista, M.5
  • 20
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • J. Vandesompele, K. De Preter, F. Pattyn, B. Poppe, N. Van Roy, A. De Paepe, and F. Speleman Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol. 3 2002 RESEARCH0034
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 21
    • 33644548649 scopus 로고    scopus 로고
    • Amplicon DNA melting analysis for mutation scanning and genotyping: Cross-platform comparison of instruments and dyes
    • M.G. Herrmann, J.D. Durtschi, L.K. Bromley, C.T. Wittwer, and K.V. Voelkerding Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes Clin. Chem. 52 2006 494 503
    • (2006) Clin. Chem. , vol.52 , pp. 494-503
    • Herrmann, M.G.1    Durtschi, J.D.2    Bromley, L.K.3    Wittwer, C.T.4    Voelkerding, K.V.5
  • 22
    • 34250633774 scopus 로고    scopus 로고
    • Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping
    • M.G. Herrmann, J.D. Durtschi, C.T. Wittwer, and K.V. Voelkerding Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping Clin. Chem. 53 2007 1544 1548
    • (2007) Clin. Chem. , vol.53 , pp. 1544-1548
    • Herrmann, M.G.1    Durtschi, J.D.2    Wittwer, C.T.3    Voelkerding, K.V.4
  • 23
    • 0033766255 scopus 로고    scopus 로고
    • Influence of DNA target melting behavior on real-time PCR quantification
    • J. Wilhelm, M. Hahn, and A. Pingoud Influence of DNA target melting behavior on real-time PCR quantification Clin. Chem. 46 2000 1738 1743
    • (2000) Clin. Chem. , vol.46 , pp. 1738-1743
    • Wilhelm, J.1    Hahn, M.2    Pingoud, A.3
  • 24
    • 34347380542 scopus 로고    scopus 로고
    • Sample number and denaturation time are crucial for the accuracy of capillary-based LightCyclers
    • T. von Kanel, F. Adolf, M. Schneider, J. Sanz, and S. Gallati Sample number and denaturation time are crucial for the accuracy of capillary-based LightCyclers Clin. Chem. 53 2007 1392 1394
    • (2007) Clin. Chem. , vol.53 , pp. 1392-1394
    • Von Kanel, T.1    Adolf, F.2    Schneider, M.3    Sanz, J.4    Gallati, S.5
  • 25
    • 0036752145 scopus 로고    scopus 로고
    • Temperature non-homogeneity in rapid airflow-based cycler significantly affects real-time PCR
    • J. Zuna, K. Muzikova, J. Madzo, O. Krejci, and J. Trka Temperature non-homogeneity in rapid airflow-based cycler significantly affects real-time PCR Biotechniques 33 2002 508 512
    • (2002) Biotechniques , vol.33 , pp. 508-512
    • Zuna, J.1    Muzikova, K.2    Madzo, J.3    Krejci, O.4    Trka, J.5
  • 27
    • 4444337502 scopus 로고    scopus 로고
    • Mathematics of quantitative kinetic PCR and the application of standard curves
    • R.G. Rutledge, and C. Cote Mathematics of quantitative kinetic PCR and the application of standard curves Nucleic Acids Res. 31 2003 e93
    • (2003) Nucleic Acids Res. , vol.31 , pp. 93
    • Rutledge, R.G.1    Cote, C.2
  • 28
    • 80054068396 scopus 로고    scopus 로고
    • R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, 2005.
    • R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, 2005.
  • 30
    • 66449099765 scopus 로고    scopus 로고
    • Checklist for optimization and validation of real-time PCR assays
    • M. Raymaekers, R. Smets, B. Maes, and R. Cartuyvels Checklist for optimization and validation of real-time PCR assays J. Clin. Lab. Anal. 23 2009 145 151
    • (2009) J. Clin. Lab. Anal. , vol.23 , pp. 145-151
    • Raymaekers, M.1    Smets, R.2    Maes, B.3    Cartuyvels, R.4
  • 31
    • 0027496294 scopus 로고
    • Imprinting of human H19: Allele-specific CpG methylation, loss of the active allele in Wilms tumor, and potential for somatic allele switching
    • Y. Zhang, T. Shields, T. Crenshaw, Y. Hao, T. Moulton, and B. Tycko Imprinting of human H19: allele-specific CpG methylation, loss of the active allele in Wilms tumor, and potential for somatic allele switching Am. J. Hum. Genet. 53 1993 113 124
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 113-124
    • Zhang, Y.1    Shields, T.2    Crenshaw, T.3    Hao, Y.4    Moulton, T.5    Tycko, B.6
  • 32
    • 0347320652 scopus 로고    scopus 로고
    • A quantitative real-time RT-PCR assay for salmon IGF-I mRNA, and its application in the study of GH regulation of IGF-I gene expression in primary culture of salmon hepatocytes
    • A.L. Pierce, J.T. Dickey, D.A. Larsen, H. Fukada, P. Swanson, and W.W. Dickhoff A quantitative real-time RT-PCR assay for salmon IGF-I mRNA, and its application in the study of GH regulation of IGF-I gene expression in primary culture of salmon hepatocytes Gen. Comp. Endocrinol. 135 2004 401 411
    • (2004) Gen. Comp. Endocrinol. , vol.135 , pp. 401-411
    • Pierce, A.L.1    Dickey, J.T.2    Larsen, D.A.3    Fukada, H.4    Swanson, P.5    Dickhoff, W.W.6
  • 33
    • 13244292486 scopus 로고    scopus 로고
    • Reagent volume and plate bias in real-time polymerase chain reaction
    • E. Thomson, and R. Vincent Reagent volume and plate bias in real-time polymerase chain reaction Anal. Biochem. 337 2005 347 350
    • (2005) Anal. Biochem. , vol.337 , pp. 347-350
    • Thomson, E.1    Vincent, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.