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Volumn 39, Issue 18, 2011, Pages 8135-8147

The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

EID: 80054072119     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr525     Document Type: Article
Times cited : (69)

References (59)
  • 2
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick, F.H. (1968) The origin of the genetic code. J. Mol. Biol., 38, 367-379.
    • (1968) J. Mol. Biol. , vol.38 , pp. 367-379
    • Crick, F.H.1
  • 3
    • 0014369024 scopus 로고
    • Evolution of the genetic apparatus
    • Orgel, L.E. (1968) Evolution of the genetic apparatus. J. Mol. Biol., 38, 381-393.
    • (1968) J. Mol. Biol. , vol.38 , pp. 381-393
    • Orgel, L.E.1
  • 4
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • DOI 10.1126/science.289.5481.905
    • Ban, N., Nissen, P., Hansen, J., Moore, P.B. and Steitz, T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920. (Pubitemid 30659939)
    • (2000) Science , vol.289 , Issue.5481 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 8
    • 0027064537 scopus 로고
    • Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase
    • DOI 10.1016/0378-1119(92)90216-C
    • Steinhauer, D.A., Domingo, E. and Holland, J.J. (1992) Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase. Gene, 122, 281-288. (Pubitemid 23030332)
    • (1992) Gene , vol.122 , Issue.2 , pp. 281-288
    • Steinhauer, D.A.1    Domingo, E.2    Holland, J.J.3
  • 9
    • 37249030834 scopus 로고    scopus 로고
    • Is evolvability evolvablé Nat
    • Pigliucci, M. (2008) Is evolvability evolvablé Nat. Rev. Genet., 9, 75-82.
    • (2008) Rev. Genet. , vol.9 , pp. 75-82
    • Pigliucci, M.1
  • 10
    • 0015133749 scopus 로고
    • Selforganization of matter and the evolution of biological macromolecules
    • Eigen, M. (1971) Selforganization of matter and the evolution of biological macromolecules. Naturwissenschaften, 58, 465-523.
    • (1971) Naturwissenschaften , vol.58 , pp. 465-523
    • Eigen, M.1
  • 13
    • 62149152282 scopus 로고    scopus 로고
    • Extremely high mutation rate of a hammerhead viroid
    • Gago, S., Elena, S.F., Flores, R. and Sanjuan, R. (2009) Extremely high mutation rate of a hammerhead viroid. Science, 323, 1308.
    • (2009) Science , vol.323 , pp. 1308
    • Gago, S.1    Elena, S.F.2    Flores, R.3    Sanjuan, R.4
  • 14
    • 33847247125 scopus 로고    scopus 로고
    • Theory of lethal mutagenesis for viruses
    • DOI 10.1128/JVI.01624-06
    • Bull, J.J., Sanjuan, R. and Wilke, C.O. (2007) Theory of lethal mutagenesis for viruses. J. Virol., 81, 2930-2939. (Pubitemid 46447056)
    • (2007) Journal of Virology , vol.81 , Issue.6 , pp. 2930-2939
    • Bull, J.J.1    Sanjuan, R.2    Wilke, C.O.3
  • 15
    • 9244238208 scopus 로고    scopus 로고
    • Viral error catastrophe by mutagenic nucleosides
    • DOI 10.1146/annurev.micro.58.030603.123649
    • Anderson, J.P., Daifuku, R. and Loeb, L.A. (2004) Viral error catastrophe by mutagenic nucleosides. Annu. Rev. Microbiol., 58, 183-205. (Pubitemid 39551984)
    • (2004) Annual Review of Microbiology , vol.58 , pp. 183-205
    • Anderson, J.P.1    Daifuku, R.2    Loeb, L.A.3
  • 17
    • 0035906978 scopus 로고    scopus 로고
    • RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension
    • DOI 10.1126/science.1060786
    • Johnston, W.K., Unrau, P.J., Lawrence, M.S., Glasner, M.E. and Bartel, D.P. (2001) RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension. Science, 292, 1319-1325. (Pubitemid 32476210)
    • (2001) Science , vol.292 , Issue.5520 , pp. 1319-1325
    • Johnston, W.K.1    Unrau, P.J.2    Lawrence, M.S.3    Glasner, M.E.4    Bartel, D.P.5
  • 20
    • 34249692573 scopus 로고    scopus 로고
    • Chemical primer extension: Individual steps of spontaneous replication
    • DOI 10.1002/cbdv.200790064
    • Stutz, J.A.R., Kervio, E., Deck, C. and Richert, C. (2007) Chemical primer extension: Individual steps of spontaneous replication. Chem. Biodivers., 4, 784-802. (Pubitemid 46930037)
    • (2007) Chemistry and Biodiversity , vol.4 , Issue.4 , pp. 784-802
    • Rojas Stutz, J.A.1    Kervio, E.2    Deck, C.3    Richert, C.4
  • 22
    • 0035915346 scopus 로고    scopus 로고
    • A steroid cap adjusts the selectivity and accelerates the rates of nonenzymatic single nucleotide extensions of an oligonucleotide
    • DOI 10.1021/ja011448i
    • Stutz, J.A.R. and Richert, C. (2001) A steroid cap adjusts the selectivity and accelerates the rates of nonenzymatic single nucleotide extensions of an oligonucleotide. J. Am. Chem. Soc., 123, 12718-12719. (Pubitemid 33140413)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.50 , pp. 12718-12719
    • Rojas Stutz, J.A.1    Richert, C.2
  • 23
    • 33644911171 scopus 로고    scopus 로고
    • Tuning the reaction site for enzyme-free primer-extension reactions through small molecule substituents
    • Stutz, J.A.R. and Richert, C. (2006) Tuning the reaction site for enzyme-free primer-extension reactions through small molecule substituents. Chem-Eur. J., 12, 2472-2481.
    • (2006) Chem-Eur. J. , vol.12 , pp. 2472-2481
    • Stutz, J.A.R.1    Richert, C.2
  • 24
    • 27444431777 scopus 로고    scopus 로고
    • Accelerating chemical replication steps of RNA involving activated ribonucleotides and downstream-binding elements
    • DOI 10.1039/b510775j
    • Vogel, S.R., Deck, C. and Richert, C. (2005) Accelerating chemical replication steps of RNA involving activated ribonucleotides and downstream-binding elements. Chem. Commun., 4922-4924. (Pubitemid 41531739)
    • (2005) Chemical Communications , Issue.39 , pp. 4922-4924
    • Vogel, S.R.1    Deck, C.2    Richert, C.3
  • 25
    • 70349923765 scopus 로고    scopus 로고
    • Efficient and rapid template-directed nucleic acid copying using 20-amino-20, 3′-dideoxyribonucleoside-50-phosphorimidazolide monomers
    • Schrum, J.P., Ricardo, A., Krishnamurthy, M., Blain, J.C. and Szostak, J.W. (2009) Efficient and rapid template-directed nucleic acid copying using 20-amino-20, 3′-dideoxyribonucleoside-50-phosphorimidazolide monomers. J. Am. Chem. Soc., 131, 14560-14570.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 14560-14570
    • Schrum, J.P.1    Ricardo, A.2    Krishnamurthy, M.3    Blain, J.C.4    Szostak, J.W.5
  • 26
    • 46449105488 scopus 로고    scopus 로고
    • Template-directed synthesis of a genetic polymer in a model protocell
    • DOI 10.1038/nature07018, PII NATURE07018
    • Mansy, S.S., Schrum, J.P., Krishnamurthy, M., Tobe, S., Treco, D.A. and Szostak, J.W. (2008) Template-directed synthesis of a genetic polymer in a model protocell. Nature, 454, 122-125. (Pubitemid 351931971)
    • (2008) Nature , vol.454 , Issue.7200 , pp. 122-125
    • Mansy, S.S.1    Schrum, J.P.2    Krishnamurthy, M.3    Tobe, S.4    Treco, D.A.5    Szostak, J.W.6
  • 27
    • 0001512390 scopus 로고
    • Preferential formation of (20-50)-linked internucleotide bonds in non-enzymatic reactions
    • Lohrmann, R. and Orgel, L.E. (1978) Preferential formation of (20-50)-linked internucleotide bonds in non-enzymatic reactions. Tetrahedron, 34, 853-855.
    • (1978) Tetrahedron , vol.34 , pp. 853-855
    • Lohrmann, R.1    Orgel, L.E.2
  • 28
    • 0028782887 scopus 로고
    • Effect of phosphate activating group on oligonucleotide formation on montmorillonite: The regioselective formation of 30, 5′-linked oligoadenylates
    • Prabahar, K.J., Cole, T.D. and Ferris, J.P. (1994) Effect of phosphate activating group on oligonucleotide formation on montmorillonite: the regioselective formation of 30, 5′-linked oligoadenylates. J. Am. Chem. Soc., 116, 10914-10920.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 10914-10920
    • Prabahar, K.J.1    Cole, T.D.2    Ferris, J.P.3
  • 29
    • 75149149474 scopus 로고    scopus 로고
    • Natural and artificial RNAs occupy the same restricted region of sequence space
    • Kennedy, R., Lladser, M.E., Wu, Z., Zhang, C., Yarus, M., De Sterck, H. and Knight, R. (2010) Natural and artificial RNAs occupy the same restricted region of sequence space. RNA, 16, 280-289.
    • (2010) RNA , vol.16 , pp. 280-289
    • Kennedy, R.1    Lladser, M.E.2    Wu, Z.3    Zhang, C.4    Yarus, M.5    De Sterck, H.6    Knight, R.7
  • 32
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • DOI 10.1006/jmbi.1999.2700
    • Mathews, D.H., Sabina, J., Zuker, M. and Turner, D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940. (Pubitemid 29248642)
    • (1999) Journal of Molecular Biology , vol.288 , Issue.5 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 33
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson - Crick base pairs
    • DOI 10.1021/bi9809425
    • Xia, T., SantaLucia, J. Jr, Burkard, M.E., Kierzek, R., Schroeder, S.J., Jiao, X., Cox, C. and Turner, D.H. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735. (Pubitemid 28487580)
    • (1998) Biochemistry , vol.37 , Issue.42 , pp. 14719-14735
    • Xia, T.1    SantaLucia Jr., J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8
  • 36
    • 0016200132 scopus 로고
    • A semi-quantitative treatment of missense and nonsense suppression in the strA and ram ribosomal mutants of Escherichia coli. Evaluation of some molecular parameters of translation in vivo
    • Ninio, J. (1974) A semi-quantitative treatment of missense and nonsense suppression in the strA and ram ribosomal mutants of Escherichia coli. Evaluation of some molecular parameters of translation in vivo. J. Mol. Biol., 84, 297-313.
    • (1974) J. Mol. Biol. , vol.84 , pp. 297-313
    • Ninio, J.1
  • 37
    • 0000359208 scopus 로고
    • Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • Hopfield, J.J. (1974) Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA, 71, 4135-4139.
    • (1974) Proc. Natl Acad. Sci. USA , vol.71 , pp. 4135-4139
    • Hopfield, J.J.1
  • 38
    • 0000328668 scopus 로고
    • Substituent control of the poly(C)-directed oligomerization of guanosine 5′-phosphoroimidazolide
    • Inoue, T. and Orgel, L.E. (1981) Substituent control of the poly(C)-directed oligomerization of guanosine 5′-phosphoroimidazolide. J. Am. Chem. Soc., 103, 7666-7667.
    • (1981) J. Am. Chem. Soc. , vol.103 , pp. 7666-7667
    • Inoue, T.1    Orgel, L.E.2
  • 39
    • 0027114436 scopus 로고
    • Nonenzymatic template-directed synthesis on hairpin oligonucleotides. Incorporation of adenosine and uridine residues
    • Wu, T. and Orgel, L.E. (1992) Nonenzymatic template-directed synthesis on hairpin oligonucleotides. Incorporation of adenosine and uridine residues. J. Am. Chem. Soc., 114, 7963-7969.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 7963-7969
    • Wu, T.1    Orgel, L.E.2
  • 40
    • 0019333922 scopus 로고
    • Efficient metal-ion catalyzed template-directed oligonucleotide synthesis
    • Lohrmann, R., Bridson, P.K., Bridson, P.K. and Orgel, L.E. (1980) Efficient metal-ion catalyzed template-directed oligonucleotide synthesis. Science, 208, 1464-1465.
    • (1980) Science , vol.208 , pp. 1464-1465
    • Lohrmann, R.1    Bridson, P.K.2    Bridson, P.K.3    Orgel, L.E.4
  • 41
    • 0034322420 scopus 로고    scopus 로고
    • Nonenzymatic Template-directed Synthesis of RNA from Monomers
    • DOI 10.1023/A:1026663422976
    • Kozlov, I.A. and Orgel, L.E. (2000) Nonenzymatic template-directed synthesis of RNA from monomers. Mol. Biol., 34, 781-789. (Pubitemid 33214739)
    • (2000) Molecular Biology , vol.34 , Issue.6 , pp. 781-789
    • Kozlov, I.A.1    Orgel, L.E.2
  • 42
  • 43
    • 0023512002 scopus 로고
    • Nonenzymatic template-directed synthesis of informational macromolecules
    • Joyce, G.F. (1987) Nonenzymatic template-directed synthesis of informational macromolecules. Cold Spring Harb. Sym., 52, 41-51. (Pubitemid 18262311)
    • (1987) Cold Spring Harbor Symposia on Quantitative Biology , vol.52 , pp. 41-51
    • Joyce, G.F.1
  • 44
    • 0022423291 scopus 로고
    • Oligomerization of activated derivatives of 3′-amino-3'- deoxyguanosine on poly(C) and poly(Dc) templates
    • Zielinski, W.S. and Orgel, L.E. (1985) Oligomerization of activated derivatives of 3′-amino-3'-deoxyguanosine on poly(C) and poly(Dc) templates. Nucleic Acids Res., 13, 2469-2484.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 2469-2484
    • Zielinski, W.S.1    Orgel, L.E.2
  • 45
    • 0023641361 scopus 로고
    • Oligomerization of 3'-amino-3'-deoxyguanosine-5'-phosphorimidazolidate on a D(Cpcpcpcpc) template
    • Tohidi, M., Zielinski, W.S., Chen, C.H.B. and Orgel, L.E. (1987) Oligomerization of 3'-amino-3'-deoxyguanosine-5'-phosphorimidazolidate on a D(Cpcpcpcpc) template. J. Mol. Evol., 25, 97-99.
    • (1987) J. Mol. Evol. , vol.25 , pp. 97-99
    • Tohidi, M.1    Zielinski, W.S.2    Chen, C.H.B.3    Orgel, L.E.4
  • 46
    • 0033839338 scopus 로고    scopus 로고
    • A comparison of RNA with DNA in template-directed synthesis
    • DOI 10.1002/1522-2675(20000809)83:8<1678::AID-HLCA1678>3.0.CO;2-P
    • Zielinski, M., Kozlov, I.A. and Orgel, L.E. (2000) A comparison of RNA with DNA in template-directed synthesis. Helvet. Chim. Acta, 83, 1678-1684. (Pubitemid 30662518)
    • (2000) Helvetica Chimica Acta , vol.83 , Issue.8 , pp. 1678-1684
    • Zielinski, M.1    Kozlov, I.A.2    Orgel, L.E.3
  • 47
    • 0020317728 scopus 로고
    • Molecular structure of r(GCG)d(TATACGC): A DNA-RNA hybrid helix joined to double helical DNA
    • DOI 10.1038/299601a0
    • Wang, A.H., Fujii, S., van Boom, J.H., van der Marel, G.A., van Boeckel, S.A. and Rich, A. (1982) Molecular structure of r(GCG)d(TATACGC): a DNA-RNA hybrid helix joined to double helical DNA. Nature, 299, 601-604. (Pubitemid 12033272)
    • (1982) Nature , vol.299 , Issue.5884 , pp. 601-604
    • Wang, A.H.-J.1    Fujii, S.2    Van Boom, J.H.3
  • 48
    • 0027299690 scopus 로고
    • Conformational influence of the ribose 2'-hydroxyl group: Crystal structures of DNA-RNA chimeric duplexes
    • Egli, M., Usman, N. and Rich, A. (1993) Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 3221-3237. (Pubitemid 23126887)
    • (1993) Biochemistry , vol.32 , Issue.13 , pp. 3221-3237
    • Egli, M.1    Usman, N.2    Rich, A.3
  • 49
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith, S.B., Cui, Y.J. and Bustamante, C. (1996) Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271, 795-799.
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.J.2    Bustamante, C.3
  • 50
    • 34147193842 scopus 로고    scopus 로고
    • Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking
    • Seol, Y., Skinner, G.M., Visscher, K., Buhot, A. and Halperin, A. (2007) Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking. Phys. Rev. Lett., 98, 158103.
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 158103
    • Seol, Y.1    Skinner, G.M.2    Visscher, K.3    Buhot, A.4    Halperin, A.5
  • 52
    • 0026863789 scopus 로고
    • DNA precursor asymmetries, replication fidelity, and variable genome evolution
    • Mathews, C.K. and Ji, J. (1992) DNA precursor asymmetries, replication fidelity, and variable genome evolution. BioEssays, 14, 295-301.
    • (1992) BioEssays , vol.14 , pp. 295-301
    • Mathews, C.K.1    Ji, J.2
  • 53
    • 0034496001 scopus 로고    scopus 로고
    • Undermining the Baldwin expediting effect: Does phenotypic plasticity accelerate evolution?
    • DOI 10.1006/tpbi.2000.1484
    • Ancel, L.W. (2000) Undermining the Baldwin expediting effect: does phenotypic plasticity accelerate evolution? Theor. Popul. Biol., 58, 307-319. (Pubitemid 32116891)
    • (2000) Theoretical Population Biology , vol.58 , Issue.4 , pp. 307-319
    • Ancel, L.W.1
  • 54
    • 70349333227 scopus 로고    scopus 로고
    • The evolutionary consequences of erroneous protein synthesis
    • Drummond, D.A. and Wilke, C.O. (2009) The evolutionary consequences of erroneous protein synthesis. Nat. Rev. Genet., 10, 715-724.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 715-724
    • Drummond, D.A.1    Wilke, C.O.2
  • 55
    • 65549084298 scopus 로고    scopus 로고
    • Potential role of phenotypic mutations in the evolution of protein expression and stability
    • Goldsmith, M. and Tawfik, D.S. (2009) Potential role of phenotypic mutations in the evolution of protein expression and stability. Proc. Natl Acad. Sci. USA, 106, 6197-6202.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 6197-6202
    • Goldsmith, M.1    Tawfik, D.S.2
  • 56
    • 79953809654 scopus 로고    scopus 로고
    • Ribozyme-catalyzed transcription of an active ribozyme
    • Wochner, A., Attwater, J., Coulson, A. and Holliger, P. (2011) Ribozyme-catalyzed transcription of an active ribozyme. Science, 332, 209-212.
    • (2011) Science , vol.332 , pp. 209-212
    • Wochner, A.1    Attwater, J.2    Coulson, A.3    Holliger, P.4
  • 57
    • 25144450882 scopus 로고    scopus 로고
    • Real ribozymes suggest a relaxed error threshold
    • DOI 10.1038/ng1621, PII NG1621
    • Kun, A., Santos, M. and Szathmary, E. (2005) Real ribozymes suggest a relaxed error threshold. Nat. Genet., 37, 1008-1011. (Pubitemid 43086161)
    • (2005) Nature Genetics , vol.37 , Issue.9 , pp. 1008-1011
    • Kun, A.1    Santos, M.2    Szathmary, E.3
  • 59
    • 34547277414 scopus 로고    scopus 로고
    • Evolution equation of phenotype distribution: General formulation and application to error catastrophe
    • Sato, K. and Kaneko, K. (2007) Evolution equation of phenotype distribution: general formulation and application to error catastrophe. Phys. Rev. E, 75, 061909-061918.
    • (2007) Phys. Rev. e , vol.75 , pp. 061909-061918
    • Sato, K.1    Kaneko, K.2


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