메뉴 건너뛰기




Volumn 4, Issue , 2011, Pages

Quantifying stability in gene list ranking across microarray derived clinical biomarkers

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; ESTROGEN RECEPTOR; TUMOR MARKER;

EID: 80053974135     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-4-73     Document Type: Article
Times cited : (13)

References (34)
  • 2
    • 33645825183 scopus 로고    scopus 로고
    • Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
    • 10.1073/pnas.0601231103 16585533
    • Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Ein-Dor L, Zuk O, Domany E, Proc Natl Acad Sci USA 2006 103 15 5923 5928 10.1073/pnas.0601231103 16585533
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.15 , pp. 5923-5928
    • Ein-Dor, L.1    Zuk, O.2    Domany, E.3
  • 3
    • 33646383088 scopus 로고    scopus 로고
    • Dimension reduction for classification with gene expression microarray data
    • 16646870
    • Dimension reduction for classification with gene expression microarray data. Dai JJ, Lieu L, Rocke D, Stat Appl Genet Mol Biol 2006 5 rticle6 16646870
    • (2006) Stat Appl Genet Mol Biol , vol.5
    • Dai, J.J.1    Lieu, L.2    Rocke, D.3
  • 4
    • 78049434350 scopus 로고    scopus 로고
    • Dimension reduction for high-dimensional data
    • Dimension reduction for high-dimensional data. Li L, Methods Mol Biol 620 417 434
    • Methods Mol Biol , vol.620 , pp. 417-434
    • Li, L.1
  • 6
    • 0034782618 scopus 로고    scopus 로고
    • Model-based clustering and data transformations for gene expression data
    • Model-based clustering and data transformations for gene expression data. Yeung KY, Fraley C, Murua A, Raftery AE, Ruzzo WL, Bioinformatics 2001 17 10 977 987 10.1093/bioinformatics/17.10.977 11673243 (Pubitemid 32998635)
    • (2001) Bioinformatics , vol.17 , Issue.10 , pp. 977-987
    • Yeung, K.Y.1    Fraley, C.2    Murua, A.3    Raftery, A.E.4    Ruzzo, W.L.5
  • 7
    • 0035024021 scopus 로고    scopus 로고
    • Validating clustering for gene expression data
    • Validating clustering for gene expression data. Yeung KY, Haynor DR, Ruzzo WL, Bioinformatics 2001 17 4 309 318 10.1093/bioinformatics/17.4.309 11301299 (Pubitemid 32421924)
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 309-318
    • Yeung, K.Y.1    Haynor, D.R.2    Ruzzo, W.L.3
  • 8
    • 0034800371 scopus 로고    scopus 로고
    • Principal component analysis for clustering gene expression data
    • Principal component analysis for clustering gene expression data. Yeung KY, Ruzzo WL, Bioinformatics 2001 17 9 763 774 10.1093/bioinformatics/17.9.763 11590094 (Pubitemid 32970476)
    • (2001) Bioinformatics , vol.17 , Issue.9 , pp. 763-774
    • Yeung, K.Y.1    Ruzzo, W.L.2
  • 9
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • 10963673
    • Singular value decomposition for genome-wide expression data processing and modeling. Alter O, Brown PO, Botstein D, Proc Natl Acad Sci USA 2000 97 18 10101 10106 10963673
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.18 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 13
    • 34249709906 scopus 로고    scopus 로고
    • Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process
    • DOI 10.1186/1471-2407-7-64
    • Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process. Chandran UR, Ma C, Dhir R, Bisceglia M, Lyons-Weiler M, Liang W, Michalopoulos G, Becich M, Monzon FA, BMC Cancer 2007 7 64 10.1186/1471-2407-7-64 17430594 (Pubitemid 47161402)
    • (2007) BMC Cancer , vol.7 , pp. 64
    • Chandran, U.R.1    Ma, C.2    Dhir, R.3    Bisceglia, M.4    Lyons-Weiler, M.5    Liang, W.6    Michalopoulos, G.7    Becich, M.8    Monzon, F.A.9
  • 16
    • 80455166008 scopus 로고    scopus 로고
    • EMI-EMBL
    • EMI-EMBL, ArrayExpress Archive 2008 http://www.ebi.ac.uk/microarray-as/ ae/browse.html?keywords=E-GEOD-10072 E-GEOD-10072.
    • (2008) ArrayExpress Archive
  • 20
    • 33749591812 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer
    • 17018735
    • Gene expression profiling in breast cancer. Sotiriou C, Desmedt C, Ann Oncol 2006 17 Suppl 10 259 262 17018735
    • (2006) Ann Oncol , vol.17 , Issue.SUPPL. 10 , pp. 24259-262
    • Sotiriou, C.1    Desmedt, C.2
  • 23
    • 37349082297 scopus 로고    scopus 로고
    • Défis statistiques posés par les biopuces: Autant d'espoir que de faux positifs?
    • DOI 10.1684/bdc.2007.0491
    • [Gene expression profiling in cancer research]. Michiels S, Koscielny S, Boulet T, Hill C, Bull Cancer 2007 94 11 976 980 18055315 (Pubitemid 350304128)
    • (2007) Bulletin du Cancer , vol.94 , Issue.11 , pp. 976-980
    • Michiels, S.1    Koscielny, S.2    Boulet, T.3    Hill, C.4
  • 24
    • 34247184203 scopus 로고    scopus 로고
    • Interpretation of microarray data in cancer
    • DOI 10.1038/sj.bjc.6603673, PII 6603673
    • Interpretation of microarray data in cancer. Michiels S, Koscielny S, Hill C, Br J Cancer 2007 96 8 1155 1158 10.1038/sj.bjc.6603673 17342085 (Pubitemid 46625063)
    • (2007) British Journal of Cancer , vol.96 , Issue.8 , pp. 1155-1158
    • Michiels, S.1    Koscielny, S.2    Hill, C.3
  • 27
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • DOI 10.1093/bioinformatics/18.12.1585
    • Robust estimators for expression analysis. Hubbell E, Liu WM, Mei R, Bioinformatics 2002 18 12 1585 1592 10.1093/bioinformatics/18.12.1585 12490442 (Pubitemid 36097723)
    • (2002) Bioinformatics , vol.18 , Issue.12 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.-M.2    Mei, R.3
  • 28
    • 24644512209 scopus 로고    scopus 로고
    • Simpleaffy: A BioConductor package for Affymetrix Quality Control and data analysis
    • DOI 10.1093/bioinformatics/bti605
    • Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. Wilson CL, Miller CJ, Bioinformatics 2005 21 18 3683 3685 10.1093/bioinformatics/bti605 16076888 (Pubitemid 41264111)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3683-3685
    • Wilson, C.L.1    Miller, C.J.2
  • 29
    • 69249085408 scopus 로고    scopus 로고
    • Stability and aggregation of ranked gene lists
    • 10.1093/bib/bbp034 19679825
    • Stability and aggregation of ranked gene lists. Boulesteix AL, Slawski M, Brief Bioinform 2009 10 5 556 568 10.1093/bib/bbp034 19679825
    • (2009) Brief Bioinform , vol.10 , Issue.5 , pp. 556-568
    • Boulesteix, A.L.1    Slawski, M.2
  • 30
    • 67649205714 scopus 로고    scopus 로고
    • Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes
    • 10.1093/bioinformatics/btp295 19417058
    • Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. Zhang M, Zhang L, Zou J, Yao C, Xiao H, Liu Q, Wang J, Wang D, Wang C, Guo Z, Bioinformatics 2009 25 13 1662 1668 10.1093/bioinformatics/btp295 19417058
    • (2009) Bioinformatics , vol.25 , Issue.13 , pp. 1662-1668
    • Zhang, M.1    Zhang, L.2    Zou, J.3    Yao, C.4    Xiao, H.5    Liu, Q.6    Wang, J.7    Wang, D.8    Wang, C.9    Guo, Z.10
  • 31
    • 84870267223 scopus 로고
    • The generalisation of student's problems when several different population variances are involved
    • 10.1093/biomet/34.1-2.28 20287819
    • The generalisation of student's problems when several different population variances are involved. Welch BL, Biometrika 1947 34 1-2 28 35 10.1093/biomet/34.1-2.28 20287819
    • (1947) Biometrika , vol.34 , Issue.1-2 , pp. 28-35
    • Welch, B.L.1
  • 32
    • 80455172026 scopus 로고    scopus 로고
    • http://www.csie.ntu.edu.tw/∼cjlin/libsvm/
    • The libSVM Library http://www.csie.ntu.edu.tw/∼cjlin/libsvm/
    • The LibSVM Library
  • 34
    • 78049463658 scopus 로고    scopus 로고
    • R package e1071. http://cran.r-project.org/web/packages/e1071/index.html
    • R Package e1071


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.