Structural and enzymatic characterization of the streptococcal ATP/diadenosine polyphosphate and phosphodiester hydrolase Spr1479/SapH

Journal of Biological Chemistry

Volumn 286, Issue 41, 2011, Pages 35906-35914

  Jiang, Yong Liang ^a   Zhang, Jun Wei ^a   Yu, Wei Li ^a   Cheng, Wang ^a   Zhang, Chen Chen ^a   Frolet, Cecile ^b   Guilmi, Anne Marie Di ^b   Vernet, Thierry ^b   Zhou, Cong Zhao ^a   Chen, Yuxing ^a  

^a UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITE; BINUCLEAR CENTER; COMPLEX FORMS; COMPLEX STRUCTURE; CORE STRUCTURE; ENZYMATIC ASSAY; HYPOTHETICAL PROTEIN; INORGANIC PHOSPHATES; PHOSPHODIESTERASE ACTIVITY; PHOSPHODIESTERS; POLYPHOSPHATES; STREPTOCOCCUS PNEUMONIAE;

ESTERS; MANGANESE; MANGANESE COMPOUNDS;

HYDROLASES;

ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; DIADENOSINE POLYPHOSPHATE; FERRIC ION; HYDROLASE; MANGANESE; PHOSPHATE; STREPTOCOCCAL ADENOSINE TRIPHOSPHATE DIADENOSINE POLYPHOSPHATE AND PHOSPHODIESTER HYDROLASE; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME ASSAY; ENZYME STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STREPTOCOCCUS PNEUMONIAE;

ACID ANHYDRIDE HYDROLASES; ADENOSINE TRIPHOSPHATASES; APOENZYMES; BACTERIAL PROTEINS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; STREPTOCOCCUS PNEUMONIAE;

STREPTOCOCCUS; STREPTOCOCCUS PNEUMONIAE;

EID: 80053895483     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.228585     Document Type: Article

References (49)

1. Hausdorff, W. P., Bryant, J., Paradiso, P. R., and Siber, G. R. (2000) Clin. Infect. Dis. 30, 100-121
2. Hoskins, J., Alborn, W. E., Jr., Arnold, J., Blaszczak, L. C., Burgett, S., DeHoff, B. S., Estrem, S. T., Fritz, L., Fu, D. J., Fuller, W., Geringer, C., Gilmour, R., Glass, J. S., Khoja, H., Kraft, A. R., Lagace, R. E., LeBlanc, D. J., Lee, L. N., Lefkowitz, E. J., Lu, J., Matsushima, P., McAhren, S. M., McHenney, M., McLeaster, K., Mundy, C. W., Nicas, T. I., Norris, F. H., O'Gara, M., Peery, R. B., Robertson, G. T., Rockey, P., Sun, P. M., Winkler, M. E., Yang, Y., Young-Bellido, M., Zhao, G., Zook, C. A., Baltz, R. H., Jaskunas, S. R., Rosteck, P. R., Jr., Skatrud, P. L., and Glass, J. I. (2001) J. Bacteriol. 183, 5709-5717
3. Tettelin, H., Nelson, K. E., Paulsen, I. T., Eisen, J. A., Read, T. D., Peterson, S., Heidelberg, J., DeBoy, R. T., Haft, D. H., Dodson, R. J., Durkin, A. S., Gwinn, M., Kolonay, J. F., Nelson, W. C., Peterson, J. D., Umayam, L. A., White, O., Salzberg, S. L., Lewis, M. R., Radune, D., Holtzapple, E., Khouri, H., Wolf, A. M., Utterback, T. R., Hansen, C. L., McDonald, L. A., Feldblyum, T. V., Angiuoli, S., Dickinson, T., Hickey, E. K., Holt, I. E., Loftus, B. J., Yang, F., Smith, H. O., Venter, J. C., Dougherty, B. A., Morrison, D. A., Hollingshead, S. K., and Fraser, C. M. (2001) Science 293, 498-506
4. Wizemann, T. M., Heinrichs, J. H., Adamou, J. E., Erwin, A. L., Kunsch, C., Choi, G. H., Barash, S. C., Rosen, C. A., Masure, H. R., Tuomanen, E., Gayle, A., Brewah, Y. A., Walsh, W., Barren, P., Lathigra, R., Hanson, M., Langermann, S., Johnson, S., and Koenig, S. (2001) Infect. Immun. 69, 1593-1598
5. Polissi, A., Pontiggia, A., Feger, G., Altieri, M., Mottl, H., Ferrari, L., and Simon, D. (1998) Infect. Immun. 66, 5620-5629
6. Podobnik, M., Tyagi, R., Matange, N., Dermol, U., Gupta, A. K., Mattoo, R., Seshadri, K., and Visweswariah, S. S. (2009) J. Biol. Chem. 284, 32846-32857
7. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Griffiths-Jones, S., Howe, K. L., Marshall, M., and Sonnhammer, E. L. (2002) Nucleic Acids Res. 30, 276-280
8. Voegtli, W. C., White, D. J., Reiter, N. J., Rusnak, F., and Rosenzweig, A. C. (2000) Biochemistry 39, 15365-15374
9. Hopfner, K. P., Karcher, A., Craig, L., Woo, T. T., Carney, J. P., and Tainer, J. A. (2001) Cell 105, 473-485
10. Klabunde, T., Sträter, N., Fröhlich, R., Witzel, H., and Krebs, B. (1996) J. Mol. Biol. 259, 737-748
11. Knöfel, T., and Sträter, N. (2001) J. Mol. Biol. 309, 239-254
12. Schenk, G., Gahan, L. R., Carrington, L. E., Mitic, N., Valizadeh, M., Hamilton, S. E., de Jersey, J., and Guddat, L. W. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 273-278
13. Guranowski, A., Jakubowski, H., and Holler, E. (1983) J. Biol. Chem. 258, 14784-14789
14. Guranowski, A. (2000) Pharmacol. Ther. 87, 117-139
15. Jeyakanthan, J., Kanaujia, S. P., Nishida, Y., Nakagawa, N., Praveen, S., Shinkai, A., Kuramitsu, S., Yokoyama, S., and Sekar, K. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 116-124
16. Swarbrick, J. D., Bashtannyk, T., Maksel, D., Zhang, X. R., Blackburn, G. M., Gayler, K. R., and Gooley, P. R. (2000) J. Mol. Biol. 302, 1165-1177
17. Swarbrick, J. D., Buyya, S., Gunawardana, D., Gayler, K. R., McLennan, A. G., and Gooley, P. R. (2005) J. Biol. Chem. 280, 8471-8481
18. Bailey, S., Sedelnikova, S. E., Blackburn, G. M., Abdelghany, H. M., Baker, P. J., McLennan, A. G., and Rafferty, J. B. (2002) Structure 10, 589-600
19. Iwai, T., Kuramitsu, S., and Masui, R. (2004) J. Biol. Chem. 279, 21732-21739
20. Bessman, M. J., Frick, D. N., and O'Handley, S. F. (1996) J. Biol. Chem. 271, 25059-25062
21. Gabelli, S. B., Bianchet, M. A., Bessman, M. J., and Amzel, L. M. (2001) Nat. Struct. Biol. 8, 467-472
22. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
23. Brodersen, D. E., de La Fortelle, E., Vonrhein, C., Bricogne, G., Nyborg, J., and Kjeldgaard, M. (2000) Acta Crystallogr. D Biol. Crystallogr. 56, 431-441
24. Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
25. Vagin, A., and Teplyakov, A. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 22-25
26. Collaborative Computational Project No. 4. (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
27. Murshudov., G. N., Vagin., A. A., and Dodson., E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
28. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
29. Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., 3rd, Snoeyink, J., Richardson, J. S., and Richardson, D. C. (2007) Nucleic Acids Res. 35, W375-W383
30. Laskowski, R., Macarthur, M., Moss, D., and Thornton, J. (1993) J. Appl. Crystallogr. 26, 283-291
31. DeLano, W. L. (2002) The PyMOL Molecular Graphics System, DeLano Scientific LLC, San Carlos, CA
32. Miller, D. J., Shuvalova, L., Evdokimova, E., Savchenko, A., Yakunin, A. F., and Anderson, W. F. (2007) Protein Sci. 16, 1338-1348
33. Chen, S., Yakunin, A. F., Kuznetsova, E., Busso, D., Pufan, R., Proudfoot, M., Kim, R., and Kim, S. H. (2004) J. Biol. Chem. 279, 31854-31862
34. Wang, D., Guo, M., Liang, Z., Fan, J., Zhu, Z., Zang, J., Zhu, Z., Li, X., Teng, M., Niu, L., Dong, Y., and Liu, P. (2005) J. Biol. Chem. 280, 22962-22967
35. Kissinger, C. R., Parge, H. E., Knighton, D. R., Lewis, C. T., Pelletier, L. A., Tempczyk, A., Kalish, V. J., Tucker, K. D., Showalter, R. E., and Moomaw, E. W. (1995) Nature 378, 641-644
36. Wang, Q. H., Hu, W. X., Gao, W., and Bi, R. C. (2006) Proteins 65, 1032-1035
37. Shenoy, A. R., Capuder, M., Draskovic, P., Lamba, D., Visweswariah, S. S., and Podobnik, M. (2007) J. Mol. Biol. 365, 211-225
38. O'Handley, S. F., Frick, D. N., Dunn, C. A., and Bessman, M. J. (1998) J. Biol. Chem. 273, 3192-3197
39. Xu, W., Gauss, P., Shen, J., Dunn, C. A., and Bessman, M. J. (2002) J. Biol. Chem. 277, 23181-23185
40. Traut, T. W. (1994) Mol. Cell. Biochem. 140, 1-22
41. Bellinzoni, M., Wehenkel, A., Shepard, W., and Alzari, P. M. (2007) Structure 15, 863-872
42. Gray, J. J., Moughon, S., Wang, C., Schueler-Furman, O., Kuhlman, B., Rohl, C. A., and Baker, D. (2003) J. Mol. Biol. 331, 281-299
43. Mildvan, A. S., Xia, Z., Azurmendi, H. F., Saraswat, V., Legler, P. M., Massiah, M. A., Gabelli, S. B., Bianchet, M. A., Kang, L. W., and Amzel, L. M. (2005) Arch. Biochem. Biophys. 433, 129-143
44. Iwanicki, A., Herman-Antosiewicz, A., Pierechod, M., Séror, S. J., and Obuchowski, M. (2002) Biochem. J. 366, 929-936
45. Martins, A., and Shuman, S. (2005) RNA 11, 1271-1280
46. Keppetipola, N., and Shuman, S. (2006) RNA 12, 73-82
47. Keppetipola, N., and Shuman, S. (2006) J. Biol. Chem. 281, 19251-19259
48. Keppetipola, N., and Shuman, S. (2007) Nucleic Acids Res. 35, 7721-7732
49. Keppetipola, N., and Shuman, S. (2008) J. Biol. Chem. 283, 30942-30949