-
1
-
-
80053617291
-
-
Breast Cancer Facts and Figures 2009-10. American Cancer Society, Inc. 250 Williams Street, NW, Atlanta, GA. 30303.ic
-
Breast Cancer Facts and Figures 2009-10. American Cancer Society, Inc. 250 Williams Street, NW, Atlanta, GA. 30303.ic
-
-
-
-
2
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonin DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999;286:531-7.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonin, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
-
3
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sorlie T, Eisen MB, et al. Molecular portraits of human breast tumours. Nature. 2000;406:747-52.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
-
4
-
-
0037137519
-
A gene expression signature as a predictor of survival in breast cancer
-
Van de Vijver MJ, He YD, van't Veer LJ, et al. A gene expression signature as a predictor of survival in breast cancer. New Eng J Med. 2002;347(25): 1999-2009.
-
(2002)
New Eng J Med
, vol.347
, Issue.25
, pp. 1999-2009
-
-
Van de Vijver, M.J.1
He, Y.D.2
Van't veer, L.J.3
-
5
-
-
27144488136
-
Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer
-
Weigelt B, Hu Z, He X, et al. Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer. Cancer Res. 2005;65(20):9155-8.
-
(2005)
Cancer Res
, vol.65
, Issue.20
, pp. 9155-9158
-
-
Weigelt, B.1
Hu, Z.2
He, X.3
-
6
-
-
34250001297
-
A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer
-
Hunter DJ, Kraft P, Jacobs KB, Cox DG, Yeager M, et al. A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer. Nature Genet. 2007;39(7)870-4.
-
(2007)
Nature Genet
, vol.39
, Issue.7
, pp. 870-874
-
-
Hunter, D.J.1
Kraft, P.2
Jacobs, K.B.3
Cox, D.G.4
Yeager, M.5
-
7
-
-
34250006413
-
Genome-wide association study identifies novel breast cancer susceptibility loci
-
Easton DF, Pooley KA, Dunning AM, Pharoah PD, et al. Genome-wide association study identifies novel breast cancer susceptibility loci. Nature. 2007;447(7148):1087-93.
-
(2007)
Nature
, vol.447
, Issue.7148
, pp. 1087-1093
-
-
Easton, D.F.1
Pooley, K.A.2
Dunning, A.M.3
Pharoah, P.D.4
-
8
-
-
34250002140
-
Common variants on Chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer
-
Stacey SN, Manolescu A, Sulem P, Rafnar T, Gudmundsson J, et al. Common variants on Chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer. Nature Genet. 2007;39(7):865-9.
-
(2007)
Nature Genet
, vol.39
, Issue.7
, pp. 865-869
-
-
Stacey, S.N.1
Manolescu, A.2
Sulem, P.3
Rafnar, T.4
Gudmundsson, J.5
-
9
-
-
33749571327
-
-
Commonly Studied Single-Nucleotide Polymorphisms and Breast Cancer: results from the Breast Cancer Association Consortium
-
Commonly Studied Single-Nucleotide Polymorphisms and Breast Cancer: results from the Breast Cancer Association Consortium. J Natl Cancer Inst. 2006;98(19):1382-96.
-
(2006)
J Natl Cancer Inst
, vol.98
, Issue.19
, pp. 1382-1396
-
-
-
10
-
-
77952887426
-
Genome-wide association study identifies five new breast cancer susceptibility loci
-
Turnbull C, Ahmed S, Morrison J, Pernet D, et al. Genome-wide association study identifies five new breast cancer susceptibility loci. Nature Genetics. 2010;42(6):504-7.
-
(2010)
Nature Genetics
, vol.42
, Issue.6
, pp. 504-507
-
-
Turnbull, C.1
Ahmed, S.2
Morrison, J.3
Pernet, D.4
-
11
-
-
77955403865
-
FGFR2 and other loci identified in genome-wide association studies are associated with breast cancer in African American and young women
-
Barnholtz-Sloan JS, Shetty PB, Guan X, et al. FGFR2 and other loci identified in genome-wide association studies are associated with breast cancer in African American and young women. Carcinogenesis. 2010;31(18):1417-23.
-
(2010)
Carcinogenesis
, vol.31
, Issue.18
, pp. 1417-1423
-
-
Barnholtz-Sloan, J.S.1
Shetty, P.B.2
Guan, X.3
-
12
-
-
77950339092
-
Integrating pathway analysis and genetics in gene expression for genome-wide association studies
-
Zhong H, Yang X, Kaplan LM, Molony C, Schadt EE. Integrating pathway analysis and genetics in gene expression for genome-wide association studies. Amer J Hum Genet. 2010;86:581-91.
-
(2010)
Amer J Hum Genet
, vol.86
, pp. 581-591
-
-
Zhong, H.1
Yang, X.2
Kaplan, L.M.3
Molony, C.4
Schadt, E.E.5
-
13
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide assocition loci for human diseases and traits
-
DOI 10.1073/pnas.0903103106
-
Hindorff LA, Sethupathy P, Junkins HA, et al. Potential etiologic and functional implications of genome-wide assocition loci for human diseases and traits. Proc Nat Acad Sci U S A. 2009 DOI 10.1073/pnas.0903103106
-
(2009)
Proc Nat Acad Sci U S A
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
-
14
-
-
67649584052
-
Gene ontolology analysis of GWA study data sets provides insights into the biology of bipolar disorder
-
Holman P, Green EK, Pahwa JS, Ferreira MAR, et al. Gene ontolology analysis of GWA study data sets provides insights into the biology of bipolar disorder. Amer J Hum Genet. 2009;85:13-24.
-
(2009)
Amer J Hum Genet
, vol.85
, pp. 13-24
-
-
Holman, P.1
Green, E.K.2
Pahwa, J.S.3
Ferreira, M.A.R.4
-
15
-
-
74849113364
-
Proliferative genes dominate malignancyrisk gene signature in historically-normal breast cancer
-
DOI 10.1007/s10549-009-0344-y
-
Chen D, Nasir A, Culhane A, et al. Proliferative genes dominate malignancyrisk gene signature in historically-normal breast cancer. Breast Cancer Res Treat. 2009 DOI 10.1007/s10549-009-0344-y
-
(2009)
Breast Cancer Res Treat
-
-
Chen, D.1
Nasir, A.2
Culhane, A.3
-
16
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucl Acids Res. 2002;30(1):207-10.
-
(2002)
Nucl Acids Res
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
17
-
-
77950867279
-
Gene expression patterns distinguish breast carcinomas from normal breast tissues: The Malaysia context
-
Ni IBP, Zakaria Z, Muhammad R, et al. Gene expression patterns distinguish breast carcinomas from normal breast tissues: the Malaysia context. Pathology-Res Pract. 2010;206:223-8.
-
(2010)
Pathology-Res Pract
, vol.206
, pp. 223-228
-
-
Ni, I.B.P.1
Zakaria, Z.2
Muhammad, R.3
-
18
-
-
29144485743
-
SLC24A5, a putative cation exchanger, affects pigmentaion in zebrafish and humans
-
Lamason RL, Mohideen MA, Mest JR, Wong AC, et al. SLC24A5, a putative cation exchanger, affects pigmentaion in zebrafish and humans. Science. 2005;310:1782-6.
-
(2005)
Science
, vol.310
, pp. 1782-1786
-
-
Lamason, R.L.1
Mohideen, M.A.2
Mest, J.R.3
Wong, A.C.4
-
19
-
-
29444444748
-
A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction
-
Helgadottir A, Manolescu A, Helgason A, et al. A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet. 2006;38:68-74.
-
(2006)
Nat Genet
, vol.38
, pp. 68-74
-
-
Helgadottir, A.1
Manolescu, A.2
Helgason, A.3
-
20
-
-
13844310310
-
Gene expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, et al. Gene expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet. 2005; 365(9460):671-9.
-
(2005)
Lancet
, vol.365
, Issue.9460
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
-
21
-
-
80053578876
-
-
Microarray Analysis Suite 5.0, Affymetrix Inc. Santa Clara, California
-
Microarray Analysis Suite 5.0, Affymetrix Inc. Santa Clara, California
-
-
-
-
22
-
-
0002294353
-
Questions and answers #14
-
Fisher RA. "Questions and answers #14". The American Statistician. 1948; 2(5):30-1.
-
(1948)
The American Statistician
, vol.2
, Issue.5
, pp. 30-31
-
-
Fisher, R.A.1
-
23
-
-
77955981355
-
Genome-wide gene and pathway analysis
-
Luo L, Peng G, Zhu Y, et al. Genome-wide gene and pathway analysis. Eur J Hum Genet. 2010;18:1045-53.
-
(2010)
Eur J Hum Genet
, vol.18
, pp. 1045-1053
-
-
Luo, L.1
Peng, G.2
Zhu, Y.3
-
24
-
-
77449140764
-
Gene and pathway-based second-wave analysis of genome-wide association studies
-
Peng G, Luo L, Siu H, et al. Gene and pathway-based second-wave analysis of genome-wide association studies. Europ J Hum Genet. 2010;18:111-7.
-
(2010)
Europ J Hum Genet
, vol.18
, pp. 111-117
-
-
Peng, G.1
Luo, L.2
Siu, H.3
-
25
-
-
36249029788
-
Pathway-based approaches to analysis of genomewide association studies
-
Wang K, Li M, Bucan M. Pathway-based approaches to analysis of genomewide association studies. Am J Hum Genet. 2007;81:1278-83.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 1278-1283
-
-
Wang, K.1
Li, M.2
Bucan, M.3
-
26
-
-
13244289933
-
Optimized lowess normalization parameter selection for DNA microarray data
-
Berger JA, Hautaniemi S, Jarvinen A-K, Edgren H, Mitra SK, Astola J. Optimized lowess normalization parameter selection for DNA microarray data. BMC Bioinformatics. 2004;5:194
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 194
-
-
Berger, J.A.1
Hautaniemi, S.2
Jarvinen, A.-K.3
Edgren, H.4
Mitra, S.K.5
Astola, J.6
-
27
-
-
0035991757
-
A paradigm for class prediction using gene expression profiles
-
Radmacher MD, Mcshane LM, Simon R. A paradigm for class prediction using gene expression profiles. J Comput Biol. 2002;9(3):505-11.
-
(2002)
J Comput Biol
, vol.9
, Issue.3
, pp. 505-511
-
-
Radmacher, M.D.1
McShane, L.M.2
Simon, R.3
-
28
-
-
0005550903
-
On the theory of some nonparametric hypotheses
-
Lehmann EL, Stein C. On the theory of some nonparametric hypotheses. Ann Math Stat. 1949;20:28-45.
-
(1949)
Ann Math Stat
, vol.20
, pp. 28-45
-
-
Lehmann, E.L.1
Stein, C.2
-
29
-
-
0001677717
-
Controlling the false discovery rat: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Yosef. "Controlling the false discovery rat: a practical and powerful approach to multiple testing". J Royal Stat Society. Series B Methodology. 1995;57(1):289-300.
-
(1995)
J Royal Stat Society. Series B Methodology
, vol.57
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Yosef, H.2
-
31
-
-
67849097353
-
Pomello II: Finding differentially expressed genes
-
Morrissey ER, Diaz-Uriarte R. Pomello II: finding differentially expressed genes. Nucl Acids Res. 2009;37:W581-6.
-
(2009)
Nucl Acids Res
, vol.37
-
-
Morrissey, E.R.1
Diaz-Uriarte, R.2
-
32
-
-
33646361583
-
GenePattern 2.0
-
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P. GenePattern 2.0. Nature Genetics. 2006;38(5):500-1.
-
(2006)
Nature Genetics
, vol.38
, Issue.5
, pp. 500-501
-
-
Reich, M.1
Liefeld, T.2
Gould, J.3
Lerner, J.4
Tamayo, P.5
-
34
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
Gene Ontology Consortium
-
Gene Ontology Consortium. Creating the gene ontology resource: design and implementation. Genome Res. 2001;11:1425-33.
-
(2001)
Genome Res
, vol.11
, pp. 1425-1433
-
-
-
35
-
-
55449112185
-
Genome-wide associations of gene expression variation in Humans
-
Stranger BE, Forrest MS, Clark AG, et al. Genome-wide associations of gene expression variation in Humans. PLoS Genetics. 2005;1(6):e78
-
(2005)
PLoS Genetics
, vol.1
, Issue.6
-
-
Stranger, B.E.1
Forrest, M.S.2
Clark, A.G.3
-
36
-
-
0036789519
-
Variation in gene expression within and among natural populations
-
Oleksiak MF, Churchill GA, Crawford DL. Variation in gene expression within and among natural populations. Nature Genetics. 2002;32:261-6.
-
(2002)
Nature Genetics
, vol.32
, pp. 261-266
-
-
Oleksiak, M.F.1
Churchill, G.A.2
Crawford, D.L.3
-
37
-
-
68349146348
-
GWS meets microarray: Are the results of genome-wide association studies and gene expression profiling consistent? Prostate cancer as an example
-
Gorlov IP, Gallick GE, Gorlova OY, et al. GWS meets microarray: are the results of genome-wide association studies and gene expression profiling consistent? Prostate cancer as an example. PLoS One. 2009;4(8):e6511
-
(2009)
PLoS One
, vol.4
, Issue.8
-
-
Gorlov, I.P.1
Gallick, G.E.2
Gorlova, O.Y.3
-
38
-
-
77954133026
-
Estimation of effect size distribution from genome-wide association studies and implications for future discoveries
-
Park J, Wachoder S, Gail MH, et al. Estimation of effect size distribution from genome-wide association studies and implications for future discoveries. Nature Genetics. 2010;42(7):570-5.
-
(2010)
Nature Genetics
, vol.42
, Issue.7
, pp. 570-575
-
-
Park, J.1
Wachoder, S.2
Gail, M.H.3
-
39
-
-
34347364119
-
Ioannidis. Meta-analysis in genome-wide association data sets: Strategies and application in parkinson disease
-
Evangelo E, Maraganore DM, Ioannidis. Meta-analysis in genome-wide association data sets: strategies and application in parkinson disease. PLoS One. 2007;2:e196
-
(2007)
PLoS One
, vol.e196
, pp. 2
-
-
Evangelo, E.1
Maraganore, D.M.2
-
40
-
-
41049087605
-
Heterogeneity in Meta-analyses in genome-wide association investigations
-
Ionnidis JP, Patsopoulos NA, Evangelou E. Heterogeneity in Meta-analyses in genome-wide association investigations. PLoS One. 2007;9:e841
-
(2007)
PLoS One
, vol.e841
, pp. 9
-
-
Ionnidis, J.P.1
Patsopoulos, N.A.2
Evangelou, E.3
-
41
-
-
77249135158
-
A method for predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements
-
Churbanov A, Vorechovsky I, Hicks C. A method for predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements. BMC Bioinformatics. 2010;11:12
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 12
-
-
Churbanov, A.1
Vorechovsky, I.2
Hicks, C.3
-
42
-
-
77951210494
-
Pathway analysis of GWAS provides new insights into genetic susceptibility to 3 inflammatory diseases
-
Eleftherohorinou H, Wright V, Hoggart C, et al. Pathway analysis of GWAS provides new insights into genetic susceptibility to 3 inflammatory diseases. PLoS One. 2009;4(11):e8068
-
(2009)
PLoS One
, vol.4
, Issue.11
-
-
Eleftherohorinou, H.1
Wright, V.2
Hoggart, C.3
-
43
-
-
58849112975
-
Pathway based analysis of whole-genome association study data in bipolar disorder reveal genes mediating ion channel activity and synaptic neurotransmission
-
Askland K, Read C, Moore J. Pathway based analysis of whole-genome association study data in bipolar disorder reveal genes mediating ion channel activity and synaptic neurotransmission. Hum Genet. 2009;125:63-79.
-
(2009)
Hum Genet
, vol.125
, pp. 63-79
-
-
Askland, K.1
Read, C.2
Moore, J.3
-
44
-
-
65549084289
-
Pathway and network analysis of genome-wide association studies in multiple sclerosis
-
Baranzini SE, Galwey NW, Wang J, et al. Pathway and network analysis of genome-wide association studies in multiple sclerosis. Hum Mol Genet. 2009;18(11):2078-90.
-
(2009)
Hum Mol Genet
, vol.18
, Issue.11
, pp. 2078-2090
-
-
Baranzini, S.E.1
Galwey, N.W.2
Wang, J.3
-
45
-
-
40549116980
-
Comprehensive association testing of common genetic variation in DNA repair pathway genes in relationship with breast cancer risk in multiple populations
-
Haiman CA, Hsu C, de Bakker PIW, et al. Comprehensive association testing of common genetic variation in DNA repair pathway genes in relationship with breast cancer risk in multiple populations. Hum Mol Genet. 2008; 17(6):825-34.
-
(2008)
Hum Mol Genet
, vol.17
, Issue.6
, pp. 825-834
-
-
Haiman, C.A.1
Hsu, C.2
de Bakker, P.I.W.3
-
46
-
-
77953151341
-
Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade
-
Menashe I, Maeder D, Garcia-Closas M, et al. Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade. Cancer Res. 2010;7(11):4453-9.
-
(2010)
Cancer Res
, vol.7
, Issue.11
, pp. 4453-4459
-
-
Menashe, I.1
Maeder, D.2
Garcia-Closas, M.3
-
47
-
-
53649098737
-
Pathway analysis of seven common diseases assessed by genome-wide association
-
Torkamani A, Topol EJ, Schork NJ. Pathway analysis of seven common diseases assessed by genome-wide association. Genomics. 2008;92: 265-78.
-
(2008)
Genomics
, vol.92
, pp. 265-278
-
-
Torkamani, A.1
Topol, E.J.2
Schork, N.J.3
-
48
-
-
50949095168
-
Methods for detecting associations with rare variants for common diseases: Application to analysis of sequence data
-
Li B, Leal SM. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Amer J Hum Genet. 2008;83:311-21.
-
(2008)
Amer J Hum Genet
, vol.83
, pp. 311-321
-
-
Li, B.1
Leal, S.M.2
-
49
-
-
78349264203
-
A covering method for detecting genetic associations between rare variants and common phenotypes
-
e1000954
-
Bhatia G, Bansal V, Harismendy O, et al. A covering method for detecting genetic associations between rare variants and common phenotypes. PLoS Comput Biol. 2010;6(10):e1000954
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.10
-
-
Bhatia, G.1
Bansal, V.2
Harismendy, O.3
-
50
-
-
45149099137
-
Allele-specific up-regulation of FGFR2 increases susceptibility to breast cancer
-
Mayer KB, Maia A, O'Reilley M. Allele-specific up-regulation of FGFR2 increases susceptibility to breast cancer. PLoS Biology. 2008;6(5):e108
-
(2008)
PLoS Biology
, vol.6
, Issue.5
-
-
Mayer, K.B.1
Maia, A.2
O'Reilley, M.3
-
51
-
-
40349100347
-
Clinical correlates of low-risk variants in FGFR2, TNRC9, MAP3K1, LSP1, and 8q24 in Dutch cohort of incident breast cancer cases
-
Huijts PEA, Vreeswijk MPG, et al. Clinical correlates of low-risk variants in FGFR2, TNRC9, MAP3K1, LSP1, and 8q24 in Dutch cohort of incident breast cancer cases. Breast Cancer Res. 2007;9:R78.
-
(2007)
Breast Cancer Res
, vol.9
-
-
Huijts, P.E.A.1
Vreeswijk, M.P.G.2
|