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Volumn 4, Issue 8, 2009, Pages

GWAS meets microarray: Are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CARCINOGENESIS; CELL ADHESION; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE IDENTIFICATION; GENETIC ASSOCIATION; GENETIC DATABASE; HUMAN; PROSTATE CANCER; SINGLE NUCLEOTIDE POLYMORPHISM; GENETICS; MALE; PATHOLOGY; PROSTATE TUMOR;

EID: 68349146348     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0006511     Document Type: Article
Times cited : (36)

References (28)
  • 1
    • 41549145428 scopus 로고    scopus 로고
    • Gene expression profiling of non-small-cell lung cancer
    • Lacroix L, Commo F, Soria JC (2008) Gene expression profiling of non-small-cell lung cancer. Expert Rev Mol Diagn 8: 167-178.
    • (2008) Expert Rev Mol Diagn , vol.8 , pp. 167-178
    • Lacroix, L.1    Commo, F.2    Soria, J.C.3
  • 3
    • 49849105624 scopus 로고    scopus 로고
    • Gene expression profiling of breast cancer
    • Bao T, Davidson NE (2008) Gene expression profiling of breast cancer. Adv Surg 42: 249-260.
    • (2008) Adv Surg , vol.42 , pp. 249-260
    • Bao, T.1    Davidson, N.E.2
  • 4
    • 42349112088 scopus 로고    scopus 로고
    • Genome-wide association studies for complex traits: Consensus, uncertainty and challenges
    • McCarthy MI, Abecasis GR, Cardon LR, Goldstein DB, Little J, et al. (2008) Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nat Rev Genet 9: 356-369.
    • (2008) Nat Rev Genet , vol.9 , pp. 356-369
    • McCarthy, M.I.1    Abecasis, G.R.2    Cardon, L.R.3    Goldstein, D.B.4    Little, J.5
  • 5
    • 57049184635 scopus 로고    scopus 로고
    • Missing data imputation and haplotype phase inference for genome-wide association studies
    • Browning SR (2008) Missing data imputation and haplotype phase inference for genome-wide association studies. Hum Genet 124: 439-450.
    • (2008) Hum Genet , vol.124 , pp. 439-450
    • Browning, S.R.1
  • 6
    • 57649201350 scopus 로고    scopus 로고
    • FitSNPs: Highly differentially expressed genes are more likely to have variants associated with disease
    • Chen R, Morgan AA, Dudley J, Deshpande T, Li L, et al. (2008) FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease. Genome Biol 9: R170-173.
    • (2008) Genome Biol , vol.9
    • Chen, R.1    Morgan, A.A.2    Dudley, J.3    Deshpande, T.4    Li, L.5
  • 7
    • 38449103390 scopus 로고    scopus 로고
    • Two genome-wide association studies of aggressive prostate cancer implicate putative prostate tumor suppressor gene DAB2IP
    • Duggan D, Zheng SL, Knowlton M, Benitez D, Dimitrov L, et al. (2007) Two genome-wide association studies of aggressive prostate cancer implicate putative prostate tumor suppressor gene DAB2IP. J Natl Cancer Inst 99: 1836-1844.
    • (2007) J Natl Cancer Inst , vol.99 , pp. 1836-1844
    • Duggan, D.1    Zheng, S.L.2    Knowlton, M.3    Benitez, D.4    Dimitrov, L.5
  • 8
    • 34247563453 scopus 로고    scopus 로고
    • Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24
    • Gudmundsson J, Sulem P, Manolescu A, Amundadottir LT, Gudbjartsson D, et al. (2007) Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24. Nat Genet 39: 631-637.
    • (2007) Nat Genet , vol.39 , pp. 631-637
    • Gudmundsson, J.1    Sulem, P.2    Manolescu, A.3    Amundadottir, L.T.4    Gudbjartsson, D.5
  • 9
    • 50649087219 scopus 로고    scopus 로고
    • A genome-wide association screen identifies regions on chromosomes 1q25 and 7p21 as risk loci for sporadic prostate cancer
    • Nam RK, Zhang WW, Loblaw DA, Klotz LH, Trachtenberg J, et al. (2008) A genome-wide association screen identifies regions on chromosomes 1q25 and 7p21 as risk loci for sporadic prostate cancer. Prostate Cancer Prostatic Dis 11: 241-246.
    • (2008) Prostate Cancer Prostatic Dis , vol.11 , pp. 241-246
    • Nam, R.K.1    Zhang, W.W.2    Loblaw, D.A.3    Klotz, L.H.4    Trachtenberg, J.5
  • 10
    • 39749118602 scopus 로고    scopus 로고
    • Multiple loci identified in a genome-wide association study of prostate cancer
    • Thomas G, Jacobs KB, Yeager M, Kraft P, Wacholder S, et al. (2008) Multiple loci identified in a genome-wide association study of prostate cancer. Nat Genet 40: 310-315.
    • (2008) Nat Genet , vol.40 , pp. 310-315
    • Thomas, G.1    Jacobs, K.B.2    Yeager, M.3    Kraft, P.4    Wacholder, S.5
  • 11
    • 38749145596 scopus 로고    scopus 로고
    • Shifting paradigm of association studies: Value of rare single-nucleotide polymorphisms
    • Gorlov IP, Gorlova OY, Sunyaev SR, Spitz MR, Amos CI (2008) Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms. Am J Hum Genet 82: 100-112.
    • (2008) Am J Hum Genet , vol.82 , pp. 100-112
    • Gorlov, I.P.1    Gorlova, O.Y.2    Sunyaev, S.R.3    Spitz, M.R.4    Amos, C.I.5
  • 12
    • 69449083058 scopus 로고    scopus 로고
    • Candidate pathways and genes for prostate cancer: A meta-analysis of gene expression data
    • In press
    • Gorlov IP, Gorlova OY, Efstathiou E, Logothetis CJ (2009) Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data. BMC Cancer, In press.
    • (2009) BMC Cancer
    • Gorlov, I.P.1    Gorlova, O.Y.2    Efstathiou, E.3    Logothetis, C.J.4
  • 13
    • 33746341926 scopus 로고
    • The file drawer problem and tolerance for null results
    • Rosenthal R (1979) The file drawer problem and tolerance for null results. Psychol Bull 86: 638-641.
    • (1979) Psychol Bull , vol.86 , pp. 638-641
    • Rosenthal, R.1
  • 14
    • 58249119436 scopus 로고    scopus 로고
    • GEMS (Gene Expression MetaSignatures), a Web resource for querying metaanalysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells
    • Ochsner SA, Steffen DL, Hilsenbeck SG, Chen ES, Watkins C, et al. (2009) GEMS (Gene Expression MetaSignatures), a Web resource for querying metaanalysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells. Cancer Res 69:23-26.
    • (2009) Cancer Res , vol.69 , pp. 23-26
    • Ochsner, S.A.1    Steffen, D.L.2    Hilsenbeck, S.G.3    Chen, E.S.4    Watkins, C.5
  • 15
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 59849124834 scopus 로고    scopus 로고
    • Regulation of cadherin trafficking
    • Delva E, Kowalczyk AP (2009) Regulation of cadherin trafficking. Traffic 10: 259-267.
    • (2009) Traffic , vol.10 , pp. 259-267
    • Delva, E.1    Kowalczyk, A.P.2
  • 17
    • 0031847578 scopus 로고    scopus 로고
    • Serine and threonine phosphorylation of the paxillin LIM domains regulates paxillin focal adhesion localization and cell adhesion to fibronectin
    • Brown MC, Perrotta JA, Turner CE (1998) Serine and threonine phosphorylation of the paxillin LIM domains regulates paxillin focal adhesion localization and cell adhesion to fibronectin. Mol Biol Cell 9: 1803-1816.
    • (1998) Mol Biol Cell , vol.9 , pp. 1803-1816
    • Brown, M.C.1    Perrotta, J.A.2    Turner, C.E.3
  • 18
    • 33744904995 scopus 로고    scopus 로고
    • Opposing roles of zyxin/LPP ACTA repeats and the LIM domain region in cell-cell adhesion
    • Hansen MD, Beckerle MC (2006) Opposing roles of zyxin/LPP ACTA repeats and the LIM domain region in cell-cell adhesion. J Biol Chem 281: 16178-16188.
    • (2006) J Biol Chem , vol.281 , pp. 16178-16188
    • Hansen, M.D.1    Beckerle, M.C.2
  • 19
    • 0036143842 scopus 로고    scopus 로고
    • Cell adhesion molecules and adhesion abnormalities in prostate cancer
    • Mason MD, Davies G, Jiang WG (2002) Cell adhesion molecules and adhesion abnormalities in prostate cancer. Crit Rev Oncol Hematol 41: 11-28.
    • (2002) Crit Rev Oncol Hematol , vol.41 , pp. 11-28
    • Mason, M.D.1    Davies, G.2    Jiang, W.G.3
  • 23
    • 54449098848 scopus 로고    scopus 로고
    • Epithelial to mesenchymal transition of a primary prostate cell line with switches of cell adhesion modules but without malignant transformation
    • Ke XS, Qu Y, Goldfinger N, Rostad K, Hovland R, et al. (2008) Epithelial to mesenchymal transition of a primary prostate cell line with switches of cell adhesion modules but without malignant transformation. PLoS ONE 3(10): e3368.
    • (2008) PLoS ONE , vol.3 , Issue.10
    • Ke, X.S.1    Qu, Y.2    Goldfinger, N.3    Rostad, K.4    Hovland, R.5
  • 24
    • 50249168739 scopus 로고    scopus 로고
    • Epithelial-mesenchymal transition downregulates laminin alpha5 chain and upregulates laminin alpha4 chain in oral squamous carcinoma cells
    • Takkunen M, Ainola M, Vainionpaa N, Grenman R, Patarroyo M, et al. (2008) Epithelial-mesenchymal transition downregulates laminin alpha5 chain and upregulates laminin alpha4 chain in oral squamous carcinoma cells. Histochem Cell Biol 130: 509-525.
    • (2008) Histochem Cell Biol , vol.130 , pp. 509-525
    • Takkunen, M.1    Ainola, M.2    Vainionpaa, N.3    Grenman, R.4    Patarroyo, M.5
  • 25
    • 56749174260 scopus 로고    scopus 로고
    • Polarity proteins in migration and invasion
    • Etienne-Manneville S (2008) Polarity proteins in migration and invasion. Oncogene 27: 6970-6980.
    • (2008) Oncogene , vol.27 , pp. 6970-6980
    • Etienne-Manneville, S.1
  • 26
    • 33749056928 scopus 로고    scopus 로고
    • Inhibition of endothelial cell proliferation, in vitro angiogenesis, and the down-regulation of cell adhesion-related genes by genistein. Combined with a cDNA microarray analysis
    • Piao M, Mori D, Satoh T, Sugita Y, Tokunaga O (2006) Inhibition of endothelial cell proliferation, in vitro angiogenesis, and the down-regulation of cell adhesion-related genes by genistein. Combined with a cDNA microarray analysis. Endothelium 13: 249-266.
    • (2006) Endothelium , vol.13 , pp. 249-266
    • Piao, M.1    Mori, D.2    Satoh, T.3    Sugita, Y.4    Tokunaga, O.5
  • 27
    • 53649098312 scopus 로고    scopus 로고
    • Relation between cell-to-cell adhesion and angiogenesis and clinico-morphological prognostic factors in patients with gastric cancer
    • Bazas VM, Lukyanova NY, Demash DV, Galakhin KO, Myasoedov DV (2008) Relation between cell-to-cell adhesion and angiogenesis and clinico-morphological prognostic factors in patients with gastric cancer. Exp Oncol 30: 235-239.
    • (2008) Exp Oncol , vol.30 , pp. 235-239
    • Bazas, V.M.1    Lukyanova, N.Y.2    Demash, D.V.3    Galakhin, K.O.4    Myasoedov, D.V.5
  • 28


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.