-
1
-
-
84916537550
-
Bayesian analysis of binary and polychotomous response data
-
Albert, J. H. and Chib, S. (1993). Bayesian analysis of binary and polychotomous response data. J. Amer. Statist. Assoc. 88 669-679.
-
(1993)
J. Amer. Statist. Assoc
, vol.88
, pp. 669-679
-
-
Albert, J.H.1
Chib, S.2
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., Harris, M. A., Hill, D. P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J. C., Richardson, J. E., Ringwald, M., Rubin, G. M. and Sherlock, G. (2000). Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25 25-29.
-
(2000)
The Gene Ontology Consortium. Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
3
-
-
33645527646
-
Prediction by supervised principal components
-
Bair, E., Hastie, T., Paul, D. and Tibshirani, R. (2006). Prediction by supervised principal components. J. Amer. Statist. Assoc. 101 119-137.
-
(2006)
J. Amer. Statist. Assoc
, vol.101
, pp. 119-137
-
-
Bair, E.1
Hastie, T.2
Paul, D.3
Tibshirani, R.4
-
4
-
-
0000913755
-
Spatial interaction and the statistical analysis of lattice systems
-
Besag, J. (1974). Spatial interaction and the statistical analysis of lattice systems. J. Roy. Statist. Soc. Ser. B 36 192-236.
-
(1974)
J. Roy. Statist. Soc. Ser. B
, vol.36
, pp. 192-236
-
-
Besag, J.1
-
5
-
-
31144459985
-
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
-
Bild, A. H., Yao, G., Chang, J. T., Wang, Q., Potti, A., Chasse, D., Joshi, M.-B., Harpole, D., Lancaster, J. M., Berchuck, A., Olson, J. A. Jr., Marks, J. R., Dressman, H. K., West, M. and Nevins, J. R. (2006). Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439 353-357.
-
(2006)
Nature
, vol.439
, pp. 353-357
-
-
Bild, A.H.1
Yao, G.2
Chang, J.T.3
Wang, Q.4
Potti, A.5
Chasse, D.6
Joshi, M.-B.7
Harpole, D.8
Lancaster, J.M.9
Berchuck, A.10
Olson Jr., J.A.11
Marks, J.R.12
Dressman, H.K.13
West, M.14
Nevins, J.R.15
-
6
-
-
33846515112
-
Partial least squares: A versatile tool for the analysis of high-dimensional genomic data
-
Boulesteix, A.-L. and Strimmer, K. (2007). Partial least squares: A versatile tool for the analysis of high-dimensional genomic data. Brief. Bioinformatics 8 32-44.
-
(2007)
Brief. Bioinformatics
, vol.8
, pp. 32-44
-
-
Boulesteix, A.-L.1
Strimmer, K.2
-
8
-
-
0042306266
-
The practical implementation of Bayesian model selection
-
In IMS, Beachwood, OH
-
Chipman, H., George, E. I. and McCulloch, R. E. (2001). The practical implementation of Bayesian model selection. In Model Selection. Institute of Mathematical Statistics Lecture Notes-Monograph Series 38 65-134. IMS, Beachwood, OH.
-
(2001)
Model Selection. Institute of Mathematical Statistics Lecture Notes-Monograph Series
, vol.38
, pp. 65-134
-
-
Chipman, H.1
George, E.I.2
McCulloch, R.E.3
-
9
-
-
0036578644
-
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
-
Dahlquist, K. D., Salomonis, N., Vranizan, K., Lawlor, S. C. and Conklin, B. R. (2002). GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat. Genet. 31 19-20.
-
(2002)
Nat. Genet
, vol.31
, pp. 19-20
-
-
Dahlquist, K.D.1
Salomonis, N.2
Vranizan, K.3
Lawlor, S.C.4
Conklin, B.R.5
-
10
-
-
1842425625
-
Prognostic impact of cyclooxygenase-2 in breast cancer
-
Denkert, C., Winzer, K.-J. and Hauptmann, S. (2004). Prognostic impact of cyclooxygenase-2 in breast cancer. Clin. Breast Cancer 4 428-433.
-
(2004)
Clin. Breast Cancer
, vol.4
, pp. 428-433
-
-
Denkert, C.1
Winzer, K.-J.2
Hauptmann, S.3
-
11
-
-
0037263812
-
MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile for microarray data
-
Doniger, S., Salomonis, N., Dahlquist, K., Vranizan, K., Lawlor, S. and Conklin, B. (2003). MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile for microarray data. Genome Biology 41 R7.
-
(2003)
Genome Biology
, vol.41
-
-
Doniger, S.1
Salomonis, N.2
Dahlquist, K.3
Vranizan, K.4
Lawlor, S.5
Conklin, B.6
-
12
-
-
31144438305
-
Cancer biology: Signatures guide drug choice
-
Downward, J. (2006). Cancer biology: Signatures guide drug choice. Nature 439 274-275.
-
(2006)
Nature
, vol.439
, pp. 274-275
-
-
Downward, J.1
-
13
-
-
34447519211
-
Protein Kinase C alpha is a marker for antiestrogen resistance and is involved in the growth of tamoxifen resistant human breast cancer cells
-
Frankel, L. B., Lykkesfeldt, A. E., Hansen, J. B. and Stenvang, J. (2007). Protein Kinase C alpha is a marker for antiestrogen resistance and is involved in the growth of tamoxifen resistant human breast cancer cells. Breast Cancer Res. Treat. 104 165-179.
-
(2007)
Breast Cancer Res. Treat
, vol.104
, pp. 165-179
-
-
Frankel, L.B.1
Lykkesfeldt, A.E.2
Hansen, J.B.3
Stenvang, J.4
-
14
-
-
77953694851
-
-
Technical report, Dept. Stat., Stanford Univ
-
Friedman, J., Hastie, T. and Tibshirani, R. (2010). A note on the group lasso and a sparse group lasso. Technical report, Dept. Stat., Stanford Univ.
-
(2010)
A note on the group lasso and a sparse group lasso
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
15
-
-
0031526204
-
Approaches for Bayesian variable selection
-
George, E. I. and McCulloch, R. E. (1997). Approaches for Bayesian variable selection. Statist. Sinica 7 339-373.
-
(1997)
Statist. Sinica
, vol.7
, pp. 339-373
-
-
George, E.I.1
McCulloch, R.E.2
-
16
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C. D. and Lander, E. (1999). Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.12
-
17
-
-
82955223524
-
Bayesian variable selection regression for genome-wide association studies, and other large-scale problems
-
To appear
-
Guan, Y. and Stephens, M. (2011). Bayesian variable selection regression for genome-wide association studies, and other large-scale problems. Ann. Appl. Stat. To appear.
-
(2011)
Ann. Appl. Stat
-
-
Guan, Y.1
Stephens, M.2
-
18
-
-
33746764457
-
Beta 4 integrin amplifies ErbB2 signaling to promote mammary tumorigenesis
-
Guo, W., Pylayeva, Y., Pepe, A., Yoshioka, T., Muller, W. J., Inghirami, G. and Giancotti, F. G. (2006). Beta 4 integrin amplifies ErbB2 signaling to promote mammary tumorigenesis. Cell 126 489-502.
-
(2006)
Cell
, vol.126
, pp. 489-502
-
-
Guo, W.1
Pylayeva, Y.2
Pepe, A.3
Yoshioka, T.4
Muller, W.J.5
Inghirami, G.6
Giancotti, F.G.7
-
19
-
-
34147220392
-
Mediators of vascular remodelling co-opted for sequential steps in lung metastasis
-
Gupta, G. P., Nguyen, D. X., Chiang, A. C., Bos, P. D., Kim, J. Y., Nadal, C., Gomis, R. R., Manova-Todorova, K. and Massagué, J. (2007). Mediators of vascular remodelling co-opted for sequential steps in lung metastasis. Nature 446 765-770.
-
(2007)
Nature
, vol.446
, pp. 765-770
-
-
Gupta, G.P.1
Nguyen, D.X.2
Chiang, A.C.3
Bos, P.D.4
Kim, J.Y.5
Nadal, C.6
Gomis, R.R.7
Manova-Todorova, K.8
Massagué, J.9
-
20
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
Joshi-Tope, G., Gillespie, M., Vastrik, I., D'Eustachio, P., Schmidt, E., de Bono, B., Jassal, B., Gopinath, G. R., Wu, G. R., Matthews, L., Lewis, S., Birney, E. and Stein, L. (2005). Reactome: A knowledgebase of biological pathways. Nucleic Acids Res. 33 D428-D432.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
de Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
Lewis, S.11
Birney, E.12
Stein, L.13
-
21
-
-
0033982936
-
Kyoto encyclopedia of genes and genomes
-
Kanehisa, M. and Goto, S. (2000). Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
22
-
-
0346494819
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
Krieger, C., Zhang, P., Mueller, L., Wang, A., Paley, S., Arnaud, M., Pick, J., Rhee, S. and Karp, P. (2004). MetaCyc: A multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res. 32 D438-442.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Krieger, C.1
Zhang, P.2
Mueller, L.3
Wang, A.4
Paley, S.5
Arnaud, M.6
Pick, J.7
Rhee, S.8
Karp, P.9
-
23
-
-
34447573031
-
Identifying biomarkers from mass spectrometry data with ordinal outcome
-
Kwon, D., Tadesse, M. G., Sha, N., Pfeiffer, R. M. and Vannucci, M. (2007). Identifying biomarkers from mass spectrometry data with ordinal outcome. Cancer Inform. 3 19-28.
-
(2007)
Cancer Inform
, vol.3
, pp. 19-28
-
-
Kwon, D.1
Tadesse, M.G.2
Sha, N.3
Pfeiffer, R.M.4
Vannucci, M.5
-
24
-
-
78049484065
-
Penalized regression, standard errors, and Bayesian lassos
-
Kyung, M., Gill, J., Ghosh, M. and Casella, G. (2010). Penalized regression, standard errors, and Bayesian lassos. Bayesian Anal. 5 369-412.
-
(2010)
Bayesian Anal
, vol.5
, pp. 369-412
-
-
Kyung, M.1
Gill, J.2
Ghosh, M.3
Casella, G.4
-
25
-
-
51049123414
-
A six-gene signature predicting breast cancer lung metastasis
-
Landemaine, T., Jackson, A., Bellahcène, A., Rucci, N., Sin, S., Abad, B. M., Sierra, A., Boudinet, A., Guinebretière, J.-M., Ricevuto, E., Noguès, C., Briffod, M., Bièche, I., Cherel, P., Garcia, T., Castronovo, V., Teti, A., Lidereau, R. and Driouch, K. (2008). A six-gene signature predicting breast cancer lung metastasis. Cancer Res. 68 6092-6099.
-
(2008)
Cancer Res
, vol.68
, pp. 6092-6099
-
-
Landemaine, T.1
Jackson, A.2
Bellahcène, A.3
Rucci, N.4
Sin, S.5
Abad, B.M.6
Sierra, A.7
Boudinet, A.8
Guinebretière, J.-M.9
Ricevuto, E.10
Noguès, C.11
Briffod, M.12
Bièche, I.13
Cherel, P.14
Garcia, T.15
Castronovo, V.16
Teti, A.17
Lidereau, R.18
Driouch, K.19
-
26
-
-
33846326821
-
Silibinin suppresses PMA-induced MMP-9 expression by blocking the AP-1 activation via MAPK signaling pathways in MCF-7 human breast carcinoma cells
-
Lee, S., Jeong, Y., Im, H. G., Kim, C., Chang, Y. and Lee, I. (2007). Silibinin suppresses PMA-induced MMP-9 expression by blocking the AP-1 activation via MAPK signaling pathways in MCF-7 human breast carcinoma cells. Biochemical and Biophysical Research Communications 354 65-171.
-
(2007)
Biochemical and Biophysical Research Communications
, vol.354
, pp. 65-171
-
-
Lee, S.1
Jeong, Y.2
Im, H.G.3
Kim, C.4
Chang, Y.5
Lee, I.6
-
27
-
-
42649140560
-
Network-constrained regularization and variable selection for analysis of genomics data
-
Li, C. and Li, H. (2008). Network-constrained regularization and variable selection for analysis of genomics data. Bioinformatics 24 1175-1182.
-
(2008)
Bioinformatics
, vol.24
, pp. 1175-1182
-
-
Li, C.1
Li, H.2
-
28
-
-
78649419087
-
Bayesian Variable selection in structured high-dimensional covariate space with application in genomics
-
Li, F. and Zhang, N. (2010). Bayesian Variable selection in structured high-dimensional covariate space with application in genomics. J. Amer. Statist. Assoc. 105 1202-1214.
-
(2010)
J. Amer. Statist. Assoc
, vol.105
, pp. 1202-1214
-
-
Li, F.1
Zhang, N.2
-
30
-
-
77953479806
-
PKCalpha expression is a marker for breast cancer aggressiveness
-
Lønne, G. K., Cornmark, L., Zahirovic, I. O., Landberg, G., Jirström, K. and Larsson, C. (2010). PKCalpha expression is a marker for breast cancer aggressiveness. Mol. Cancer 9 76.
-
(2010)
Mol. Cancer
, vol.9
, pp. 76
-
-
Lønne, G.K.1
Cornmark, L.2
Zahirovic, I.O.3
Landberg, G.4
Jirström, K.5
Larsson, C.6
-
31
-
-
49549125943
-
Sparse statistical modelling in gene expression genomics
-
In, (K. Do, P. Mueller and M. Vannucci, eds.) Cambridge Univ. Press, Cambridge
-
Lucas, J., Carvalho, C., Wang, Q., Bild, A. Nevins, J. and West, M. (2006). Sparse statistical modelling in gene expression genomics. In Bayesian Inference for Gene Expression and Proteomics (K. Do, P. Mueller and M. Vannucci, eds.) 155-176. Cambridge Univ. Press, Cambridge.
-
(2006)
Bayesian Inference for Gene Expression and Proteomics
, pp. 155-176
-
-
Lucas, J.1
Carvalho, C.2
Wang, Q.3
Bild, A.4
Nevins, J.5
West, M.6
-
32
-
-
33745612435
-
An efficient Markov chain Monte Carlo method for distributions with intractable normalising constants
-
Møller, J., Pettitt, A. N., Reeves, R. and Berthelsen, K. K. (2006). An efficient Markov chain Monte Carlo method for distributions with intractable normalising constants. Biometrika 93 451-458.
-
(2006)
Biometrika
, vol.93
, pp. 451-458
-
-
Møller, J.1
Pettitt, A.N.2
Reeves, R.3
Berthelsen, K.K.4
-
33
-
-
0002146392
-
Genome-scale gene expression analysis and pathway reconstruction in KEGG
-
Nakao, M., Bono, H., Kawashima, S., Kamiya, T., Sato, K., Goto, S. and Kanehisa, M. (1999). Genome-scale gene expression analysis and pathway reconstruction in KEGG. Genome Informatics Series: Workshop on Genome Informatics 10 94-103.
-
(1999)
Genome Informatics Series: Workshop on Genome Informatics
, vol.10
, pp. 94-103
-
-
Nakao, M.1
Bono, H.2
Kawashima, S.3
Kamiya, T.4
Sato, K.5
Goto, S.6
Kanehisa, M.7
-
34
-
-
77952976255
-
Incorporating predictor network in penalized regression with application to microarray data
-
Pan, W., Xie, B. and Shen, X. (2010). Incorporating predictor network in penalized regression with application to microarray data. Biometrics 66 474-484.
-
(2010)
Biometrics
, vol.66
, pp. 474-484
-
-
Pan, W.1
Xie, B.2
Shen, X.3
-
35
-
-
34147177060
-
Averaged gene expressions for regression
-
Park, M. Y., Hastie, T. and Tibshirani, R. (2007). Averaged gene expressions for regression. Biostatistics 8 212-227.
-
(2007)
Biostatistics
, vol.8
, pp. 212-227
-
-
Park, M.Y.1
Hastie, T.2
Tibshirani, R.3
-
36
-
-
2942534096
-
Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes
-
Pittman, J., Huang, E., Dressman, H., Horng, C., Cheng, S., Tsou, M., Chen, C., Bild, A., Iversen, E., Huang, A., Nevins, J. and West, M. (2004). Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. Proc. Natl. Acad. Sci. USA 101 8431-8436.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8431-8436
-
-
Pittman, J.1
Huang, E.2
Dressman, H.3
Horng, C.4
Cheng, S.5
Tsou, M.6
Chen, C.7
Bild, A.8
Iversen, E.9
Huang, A.10
Nevins, J.11
West, M.12
-
37
-
-
0005193926
-
Exact sampling with coupled Markov chains and applications to statistical mechanics
-
Propp, J. G. and Wilson, D. B. (1996). Exact sampling with coupled Markov chains and applications to statistical mechanics. In Proceedings of the Seventh International Conference on Random Structures and Algorithms (Atlanta, GA, 1995) 9 223-252.
-
(1996)
In Proceedings of the Seventh International Conference on Random Structures and Algorithms (Atlanta, GA, 1995)
, vol.9
, pp. 223-252
-
-
Propp, J.G.1
Wilson, D.B.2
-
38
-
-
33748686773
-
Bayesian variable selection for the analysis of microarray data with censored outcomes
-
Sha, N., Tadesse, M. G. and Vannucci, M. (2006). Bayesian variable selection for the analysis of microarray data with censored outcomes. Bioinformatics 22 2262-2268.
-
(2006)
Bioinformatics
, vol.22
, pp. 2262-2268
-
-
Sha, N.1
Tadesse, M.G.2
Vannucci, M.3
-
39
-
-
4444239427
-
Bayesian variable selection in multinomial probit models to identify molecular signatures of disease stage
-
Sha, N., Vannucci, M., Tadesse, M. G., Brown, P. J., Dragoni, I., Davies, N., Roberts, T. C., Contestabile, A., Salmon, M., Buckley, C. and Falciani, F. (2004). Bayesian variable selection in multinomial probit models to identify molecular signatures of disease stage. Biometrics 60 812-828.
-
(2004)
Biometrics
, vol.60
, pp. 812-828
-
-
Sha, N.1
Vannucci, M.2
Tadesse, M.G.3
Brown, P.J.4
Dragoni, I.5
Davies, N.6
Roberts, T.C.7
Contestabile, A.8
Salmon, M.9
Buckley, C.10
Falciani, F.11
-
40
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp, M. A., Ross, K. N., Tamayo, P., Weng, A. P., Kutok, J. L., Aguiar, R. C. T., Gaasenbeek, M., Angelo, M., Reich, M., Pinkus, G. S., Ray, T. S., Koval, M. A., Last, K. W., Norton, A., Lister, T. A., Mesirov, J., Neuberg, D. S., Lander, E. S., Aster, J. C. and Golub, T. R. (2002). Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat. Med. 8 68-74.
-
(2002)
Nat. Med
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.T.6
Gaasenbeek, M.7
Angelo, M.8
Reich, M.9
Pinkus, G.S.10
Ray, T.S.11
Koval, M.A.12
Last, K.W.13
Norton, A.14
Lister, T.A.15
Mesirov, J.16
Neuberg, D.S.17
Lander, E.S.18
Aster, J.C.19
Golub, T.R.20
more..
-
41
-
-
79951528449
-
BtitleVariable selection for discriminant analysis with Markov random field priors for the analysis of microarray data
-
Stingo, F. and Vannucci, M. (2011). btitleVariable selection for discriminant analysis with Markov random field priors for the analysis of microarray data. Bioinformatics 27 495-501.
-
(2011)
Bioinformatics
, vol.27
, pp. 495-501
-
-
Stingo, F.1
Vannucci, M.2
-
42
-
-
80053590625
-
-
DOI:10.1214/11-AOAS463SUPP
-
Stingo, F., Chen, Y., Tadesse, M. and Vannucci, M. (2011). Supplement to: "Incorporating biological information into linear models: A Bayesian approach to the selection of pathways and genes". DOI:10.1214/11-AOAS463SUPP.
-
(2011)
Supplement to: "Incorporating biological information into linear models: A Bayesian approach to the selection of pathways and genes"
-
-
Stingo, F.1
Chen, Y.2
Tadesse, M.3
Vannucci, M.4
-
43
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. and Mesirov, J. P. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102 15545-15550.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
44
-
-
84870280402
-
-
Technical report, Dept. of Biostatistics, Univ. Texas M.D. Anderson Cancer Center
-
Telesca, D., Muller, P., Parmigiani, G. and Freedman, R. (2008). Modeling dependent gene expression. Technical report, Dept. of Biostatistics, Univ. Texas M.D. Anderson Cancer Center.
-
(2008)
Modeling dependent gene expression
-
-
Telesca, D.1
Muller, P.2
Parmigiani, G.3
Freedman, R.4
-
45
-
-
0001287271
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. (1996). Regression shrinkage and selection via the lasso. J. Roy. Statist. Soc. Ser. B 58 267-288.
-
(1996)
J. Roy. Statist. Soc. Ser. B
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
46
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D. and Altman, R. B. (2001). Missing value estimation methods for DNA microarrays. Bioinformatics 17 520-525.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
47
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer, L., Dai, H., van de Vijver, M., He, Y., Hart, A., Mao, M., Peterse, H., van der Kooy, K., Marton, M., Witteveen, A., Schreiber, G., Kerkhoven, R., Roberts, C., Linsley, P., Bernards, R. and Friend, S. (2002). Gene expression profiling predicts clinical outcome of breast cancer. Nature 415 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.1
Dai, H.2
van de Vijver, M.3
He, Y.4
Hart, A.5
Mao, M.6
Peterse, H.7
van der Kooy, K.8
Marton, M.9
Witteveen, A.10
Schreiber, G.11
Kerkhoven, R.12
Roberts, C.13
Linsley, P.14
Bernards, R.15
Friend, S.16
-
48
-
-
0027080802
-
The accelerated failure time model: A useful alternative to the Cox regression model in survival analysis
-
Wei, L. J. (1992). The accelerated failure time model: A useful alternative to the Cox regression model in survival analysis. Stat. Med. 11 1871-1879.
-
(1992)
Stat. Med
, vol.11
, pp. 1871-1879
-
-
Wei, L.J.1
-
49
-
-
34547844074
-
A Markov random field model for network-based analysis of genomic data
-
Wei, Z. and Li, H. (2007). A Markov random field model for network-based analysis of genomic data. Bioinformatics 23 1537-1544.
-
(2007)
Bioinformatics
, vol.23
, pp. 1537-1544
-
-
Wei, Z.1
Li, H.2
-
50
-
-
42649117688
-
A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data
-
Wei, Z. and Li, H. (2008). A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data. Ann. Appl. Stat. 2 408-429.
-
(2008)
Ann. Appl. Stat
, vol.2
, pp. 408-429
-
-
Wei, Z.1
Li, H.2
-
51
-
-
0001098205
-
Estimation of principal components and related models by iterative least squares
-
In, (Proc. Internat. Sympos., Dayton, Ohio, 1965) (P. Krishnaiaah, ed.) Academic Press, New York
-
Wold, H. (1966). Estimation of principal components and related models by iterative least squares. In Multivariate Analysis (Proc. Internat. Sympos., Dayton, Ohio, 1965) (P. Krishnaiaah, ed.) 391-420. Academic Press, New York.
-
(1966)
Multivariate Analysis
, pp. 391-420
-
-
Wold, H.1
-
52
-
-
33645035051
-
Model selection and estimation in regression with grouped variables
-
Yuan, M. and Lin, Y. (2006). Model selection and estimation in regression with grouped variables. J. R. Stat. Soc. Ser. B Stat. Methodol. 68 49-67.
-
(2006)
J. R. Stat. Soc. Ser. B Stat. Methodol
, vol.68
, pp. 49-67
-
-
Yuan, M.1
Lin, Y.2
-
53
-
-
65649116900
-
KEGGgraph: A graph approach to KEGG PATHWAY in R and bioconductor
-
Zhang, J. D. and Wiemann, S. (2009). KEGGgraph: A graph approach to KEGG PATHWAY in R and bioconductor. Bioinformatics 25 1470-1471.
-
(2009)
Bioinformatics
, vol.25
, pp. 1470-1471
-
-
Zhang, J.D.1
Wiemann, S.2
-
54
-
-
16244401458
-
Regularization and variable selection via the elastic net
-
Zou, H. and Hastie, T. (2005). Regularization and variable selection via the elastic net. J. R. Stat. Soc. Ser. B Stat. Methodol. 67 301-320.
-
(2005)
J. R. Stat. Soc. Ser. B Stat. Methodol
, vol.67
, pp. 301-320
-
-
Zou, H.1
Hastie, T.2
|