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Volumn 54, Issue 3, 2004, Pages 692-701

Axiom of determining transcription start points by RNA polymerase in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

C REACTIVE PROTEIN; CYCLIC AMP; PURINE; RNA POLYMERASE;

EID: 7644239573     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2004.04318.x     Document Type: Article
Times cited : (38)

References (33)
  • 1
    • 0018358652 scopus 로고
    • Modulation of the two promoters of the galactose operon of Escherichia coli
    • Adhya, S., and Miller, W. (1979) Modulation of the two promoters of the galactose operon of Escherichia coli. Nature 279: 492-494.
    • (1979) Nature , vol.279 , pp. 492-494
    • Adhya, S.1    Miller, W.2
  • 2
    • 0002644918 scopus 로고    scopus 로고
    • Extended -10 promoters
    • Eckstein, F., and Lilley, D.M.J. (eds). Heidelberg: Springer-Verlag Berlin
    • Bown, J.A., Barne, K.A., Minchin, S.D., and Busby, S.J.W. (1997) Extended -10 promoters. In Nucleic Acids and Molecular Biology, Vol. 11. Eckstein, F., and Lilley, D.M.J. (eds). Heidelberg: Springer-Verlag Berlin, pp. 41-52.
    • (1997) Nucleic Acids and Molecular Biology , vol.11 , pp. 41-52
    • Bown, J.A.1    Barne, K.A.2    Minchin, S.D.3    Busby, S.J.W.4
  • 3
    • 0034192263 scopus 로고    scopus 로고
    • DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
    • Burr, T., Mitchell, J., Kolb, A., Minchin, S., and Busby, S. (2000) DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res 28: 1864-1870.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1864-1870
    • Burr, T.1    Mitchell, J.2    Kolb, A.3    Minchin, S.4    Busby, S.5
  • 4
    • 0020046163 scopus 로고
    • Mutations in the Escherichia coli operon that define two promoters and the binding site of the cyclic AMP receptor protein
    • Busby, S., Aiba, H., and De Crombrugghe, B. (1982) Mutations in the Escherichia coli operon that define two promoters and the binding site of the cyclic AMP receptor protein. J Mol Biol 154: 211-227.
    • (1982) J Mol Biol , vol.154 , pp. 211-227
    • Busby, S.1    Aiba, H.2    De Crombrugghe, B.3
  • 5
    • 0026474571 scopus 로고
    • Control of gal transcription through DNA-looping: Inhibition of the initial transcribing complex
    • Choy, H.E., and Adhya, S. (1992) Control of gal transcription through DNA-looping: inhibition of the initial transcribing complex. Proc Natl Acad Sci USA 89: 11264-11268.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 11264-11268
    • Choy, H.E.1    Adhya, S.2
  • 6
    • 0027508925 scopus 로고
    • RNA polymerase idling and clearance in gal promoters: Use of supercoiled minicircle DNA template mode in vivo
    • Choy, H.E., and Adhya, S. (1993) RNA polymerase idling and clearance in gal promoters: use of supercoiled minicircle DNA template mode in vivo. Proc Natl Acad Sci USA 90: 472-476.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 472-476
    • Choy, H.E.1    Adhya, S.2
  • 8
    • 0031000203 scopus 로고    scopus 로고
    • RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates
    • Fredrick, K., and Helmann, J.D. (1997) RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates. Proc Natl Acad Sci USA 94: 4982-4987.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4982-4987
    • Fredrick, K.1    Helmann, J.D.2
  • 9
    • 0023650609 scopus 로고
    • Analysis of E. coli promoter sequences
    • Harley, C.B., and Reynolds, R.P. (1987) Analysis of E. coli promoter sequences. Nucleic Acids Res 15: 2343-2361.
    • (1987) Nucleic Acids Res , vol.15 , pp. 2343-2361
    • Harley, C.B.1    Reynolds, R.P.2
  • 10
    • 0021111879 scopus 로고
    • Compilation and analysis of Escherichia coli promoter DNA sequences
    • Hawley, D.K., and McClure, W.R. (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Adds Res 11: 2237-2255.
    • (1983) Nucleic Adds Res , vol.11 , pp. 2237-2255
    • Hawley, D.K.1    McClure, W.R.2
  • 11
    • 18344418394 scopus 로고    scopus 로고
    • Protein-nucleic acid interactions during opencomplex formation investigated by systematic alteration of the protein and DNA binding partners
    • Helmann, J.D., and deHaseth, P.L. (1999) Protein-nucleic acid interactions during opencomplex formation investigated by systematic alteration of the protein and DNA binding partners. Biochemistry 38: 5959-5967.
    • (1999) Biochemistry , vol.38 , pp. 5959-5967
    • Helmann, J.D.1    DeHaseth, P.L.2
  • 12
    • 0028051834 scopus 로고
    • Start site selection at lacUV5 promoter affected by the sequence context around the initiation sites
    • Jeong, W., and Kang, C. (1994) Start site selection at lacUV5 promoter affected by the sequence context around the initiation sites. Nucleic Acids Res 22: 4667-4672.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4667-4672
    • Jeong, W.1    Kang, C.2
  • 13
    • 0028301238 scopus 로고
    • Slippage synthesis at the galP2 promoter of Escherichia coli and its regulation by UTP concentration and cAMP-cAMP receptor protein
    • Jin, D.J. (1994) Slippage synthesis at the galP2 promoter of Escherichia coli and its regulation by UTP concentration and cAMP-cAMP receptor protein. J Biol Chem 269: 17221-17227.
    • (1994) J Biol Chem , vol.269 , pp. 17221-17227
    • Jin, D.J.1
  • 14
    • 0026599029 scopus 로고
    • Mutant σ factor blocks transcription between promoter binding and initiation of transcription
    • Jones, C.H., and Morgan, C.P., Jr. (1992) Mutant σ factor blocks transcription between promoter binding and initiation of transcription. Proc Natl Acad Sci USA 89: 1958-1962.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1958-1962
    • Jones, C.H.1    Morgan Jr., C.P.2
  • 15
    • 0023644795 scopus 로고
    • Constitutive function of a positively regulated promoter reveals new sequences essential for activity
    • Keilty, S., and Rosenberg, M. (1987) Constitutive function of a positively regulated promoter reveals new sequences essential for activity. J Biol Chem 262: 6389-6395.
    • (1987) J Biol Chem , vol.262 , pp. 6389-6395
    • Keilty, S.1    Rosenberg, M.2
  • 16
    • 1342332192 scopus 로고    scopus 로고
    • Identification of promoters of Escherichia coli and phage in the transcription section plasmid pSA850
    • Lewis, D.E.A. (2003) Identification of promoters of Escherichia coli and phage in the transcription section plasmid pSA850. Methods Enzymol 370: 618-645.
    • (2003) Methods Enzymol , vol.370 , pp. 618-645
    • Lewis, D.E.A.1
  • 17
    • 0037169508 scopus 로고    scopus 로고
    • In vitro repression of the gal promoters by GalR and HU depends on the proper helical phasing of the two operators
    • Lewis, D.E.A., and Adhya, S. (2002) In vitro repression of the gal promoters by GalR and HU depends on the proper helical phasing of the two operators. J Biol Chem 277: 2498-2504.
    • (2002) J Biol Chem , vol.277 , pp. 2498-2504
    • Lewis, D.E.A.1    Adhya, S.2
  • 18
    • 0032483348 scopus 로고    scopus 로고
    • Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoterfunction
    • Li, X.-Y., and McClure, W.R. (1998) Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoterfunction. J Biol Chem 273: 23558-23566.
    • (1998) J Biol Chem , vol.273 , pp. 23558-23566
    • Li, X.-Y.1    McClure, W.R.2
  • 19
    • 0035910043 scopus 로고    scopus 로고
    • A 'master' in base unpairing during isomerization of a promoter upon RNA polymerase binding
    • Lim, H.M., Lee, H.G., Roy, S., and Adhya, S. (2001) A 'master' in base unpairing during isomerization of a promoter upon RNA polymerase binding. Proc Natl Acad Sci USA 98: 14849-14852.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 14849-14852
    • Lim, H.M.1    Lee, H.G.2    Roy, S.3    Adhya, S.4
  • 20
    • 0028301062 scopus 로고
    • Effects of transcriptional start site sequence and position nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli
    • Liu, J., and Turnbough, C.L., Jr. (1994) Effects of transcriptional start site sequence and position nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli. J Bact 176: 2938-2945.
    • (1994) J Bact , vol.176 , pp. 2938-2945
    • Liu, J.1    Turnbough Jr., C.L.2
  • 21
    • 0013996822 scopus 로고
    • Specificity of initiation and synthesis of RNA from DNA templates
    • Maitra, U., Cohen, S.N., and Hurwitz, J. (1966) Specificity of initiation and synthesis of RNA from DNA templates. Cold Spring Harb Symp Quant Biol 31: 113-122.
    • (1966) Cold Spring Harb Symp Quant Biol , vol.31 , pp. 113-122
    • Maitra, U.1    Cohen, S.N.2    Hurwitz, J.3
  • 22
    • 0141605202 scopus 로고    scopus 로고
    • Identication and analysis of 'extended -10' promoters in Escherichia coli
    • Mitchell, J.E., Zheng, D., Busby, S.J.W., and Minchin, S.D. (2003) Identication and analysis of 'extended -10' promoters in Escherichia coli. Nucleic Acids Res 31: 4689-4695.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4689-4695
    • Mitchell, J.E.1    Zheng, D.2    Busby, S.J.W.3    Minchin, S.D.4
  • 23
    • 0017643161 scopus 로고
    • Dual control for transcription of the galactose operon by cyclic AMP and its receptor protein at two interspersed promoters
    • Musso, R.E., Di Lauro, R., Adhya, S., and De Crombrugghe, B. (1977) Dual control for transcription of the galactose operon by cyclic AMP and its receptor protein at two interspersed promoters. Cell 12: 847-854.
    • (1977) Cell , vol.12 , pp. 847-854
    • Musso, R.E.1    Di Lauro, R.2    Adhya, S.3    De Crombrugghe, B.4
  • 25
    • 0022996627 scopus 로고
    • Transcription initiation at the Escherichia coli galactose operon promoters in the absence of the normal -35 region sequences
    • Ponnambalam, S., Webster, C., Bingham, A., and Busby, S. (1986) Transcription initiation at the Escherichia coli galactose operon promoters in the absence of the normal -35 region sequences. J Biol Chem 261: 16043-16048.
    • (1986) J Biol Chem , vol.261 , pp. 16043-16048
    • Ponnambalam, S.1    Webster, C.2    Bingham, A.3    Busby, S.4
  • 27
    • 0019776203 scopus 로고
    • Nucleotide sequence at the end of the gene for RNA polymerase β'subunit (rpoC)
    • Squires, C., Krainer, A., Barry, G., Shen, W.-F., and Squires, C.L. (1981) Nucleotide sequence at the end of the gene for RNA polymerase β'subunit (rpoC). Nucleic Acids Res 9: 6827-6840.
    • (1981) Nucleic Acids Res , vol.9 , pp. 6827-6840
    • Squires, C.1    Krainer, A.2    Barry, G.3    Shen, W.-F.4    Squires, C.L.5
  • 28
    • 0027323047 scopus 로고
    • Nucleotide pool-sensitive selection of the transcriptional start site in vivo at the Salmonella typhimurium pyrC and pyrD promoters
    • Sørensen, K.I., Baker, K.E., Kelln, R.A., and Neuhard, J. (1993) Nucleotide pool-sensitive selection of the transcriptional start site in vivo at the Salmonella typhimurium pyrC and pyrD promoters. J Bact 175: 4137-4144.
    • (1993) J Bact , vol.175 , pp. 4137-4144
    • Sørensen, K.I.1    Baker, K.E.2    Kelln, R.A.3    Neuhard, J.4
  • 29
    • 0345174100 scopus 로고
    • Interaction site of Escherichia coli cyclic AMP receptor protein on DNA of galactose operon promoters
    • Taniguchi, T., O'Neill, M., and de Crombugghe, B. (1979) Interaction site of Escherichia coli cyclic AMP receptor protein on DNA of galactose operon promoters. Proc Natl Acad Sci USA 76: 5090-5094.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5090-5094
    • Taniguchi, T.1    O'Neill, M.2    De Crombugghe, B.3
  • 30
    • 0019547284 scopus 로고
    • Inhibition of CoIEI RNA primer formation by a plasmid-specified small RNA
    • Tomizawa, J.-I., Itoh, T., Selzer, G., and Som, T. (1981) Inhibition of CoIEI RNA primer formation by a plasmid-specified small RNA. Biochemistry 78: 1421-1425.
    • (1981) Biochemistry , vol.78 , pp. 1421-1425
    • Tomizawa, J.-I.1    Itoh, T.2    Selzer, G.3    Som, T.4
  • 31
    • 0001612470 scopus 로고    scopus 로고
    • Regulation of upp expression in Escherichia coli by UTP sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription
    • Tu, A.-H.-T., and Turnbough, C.L., Jr. (1997) Regulation of upp expression in Escherichia coli by UTP sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription. J Bact 179: 6665-6673.
    • (1997) J Bact , vol.179 , pp. 6665-6673
    • Tu, A.-H.-T.1    Turnbough Jr., C.L.2
  • 32
    • 0032146640 scopus 로고    scopus 로고
    • The -16 region of Bacillus subtilis and other gram-positive bacterial promoters
    • Voskuil, M.I., and Chambliss, G.H. (1998) The -16 region of Bacillus subtilis and other gram-positive bacterial promoters. Nucleic Acids Res 26: 3584-3590.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3584-3590
    • Voskuil, M.I.1    Chambliss, G.H.2
  • 33
    • 0036719293 scopus 로고    scopus 로고
    • Factors affecting start site selection at the Escherichia coli fis promoter
    • Walker, K.A., and Osuna, R. (2002) Factors affecting start site selection at the Escherichia coli fis promoter. J Bact 184: 4783-4791.
    • (2002) J Bact , vol.184 , pp. 4783-4791
    • Walker, K.A.1    Osuna, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.