Genetic and epigenetic status of triple exotic consanguinity cotton introgression lines

Genetics and Molecular Research

Volumn 10, Issue 4, 2011, Pages 4063-4072

  He, S P ^a   Sun, J L ^a   Du, X M ^a  

^a Key Laboratory of Cotton Biology of Henan Province   (China)

Author keywords

DNA methylation; Gossypium; Introgression lines; Polymorphism

Indexed keywords

CYTOSINE; DNA FRAGMENT; PLANT DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CONTROLLED STUDY; COTTON; DEMETHYLATION; DNA FRAGMENTATION; DNA METHYLATION; DNA SEQUENCE; EPIGENETICS; EXOTIC SPECIES; GENE SEQUENCE; GENETIC POLYMORPHISM; GOSSYPIUM ARBOREUM; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM; GOSSYPIUM THURBERI; INTROGRESSION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PLANT GENETICS; SPECIES COMPARISON; CONSANGUINITY; GENE AMPLIFICATION; GENETIC IMPROVEMENT; METHYLATION SENSITIVE AMPLIFIED POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GOSSYPIUM; GROWTH, DEVELOPMENT AND AGING; INBREEDING; METABOLISM;

GOSSYPIUM; GOSSYPIUM ARBOREUM; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM; GOSSYPIUM THURBERI;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; DNA METHYLATION; DNA, PLANT; EPIGENOMICS; GENETIC VARIATION; GOSSYPIUM; INBREEDING; POLYMORPHISM, GENETIC;

EID: 80053581280     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/2011.October.3.1     Document Type: Article

References (28)

1. Beasley JO (1940). The origin of American tetraploid Gossypium species. Am. Nat. 74: 285-286.
2. Bender J (2004). DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55: 41-68.
3. Bird A (2007). Perceptions of epigenetics. Nature 447: 396-398.
4. Cervera MT, Ruiz-Garcia L and Martinez-Zapater JM (2002). Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol. Genet. Genomics 268: 543-552.
5. Culp W and Harrell DC (1973). Breeding methods for improving yield and fiber quality of upland cotton (Gossypium hirsutum L.). Crop Sci. 13: 686-689.
6. Dong ZY, Wang YM, Zhang ZJ, Shen Y, et al. (2006). Extent and pattern of DNA methylation alteration in rice lines derived from introgressive hybridization of rice and Zizania latifolia Griseb. Theor. Appl. Genet. 113: 196-205.
7. Fieldes MA, Schaeffer SM, Krech MJ and Brown JC (2005). DNA hypomethylation in 5-azacytidine-induced early-flowering lines of flax. Theor. Appl. Genet. 111: 136-149.
8. Finnegan EJ, Peacock WJ and Dennis ES (1996). Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl. Acad. Sci. U. S. A. 93: 8449-8454.
9. Iqbal MJ, Reddy OUK, El-Zik KM and Pepper AE (2001). A genetic bottleneck in the "evolution under domestication" of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor. Appl. Genet. 103: 547-554.
10. Jaccard P (1908). Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44: 270.
11. Jin H, Hu W, Wei Z, Wan L, et al. (2008). Alterations in cytosine methylation and species-specific transcription induced by interspecific hybridization between Oryza sativa and O. officinalis. Theor. Appl. Genet. 117: 1271-1279.
12. Kakutani T, Jeddeloh JA, Flowers SK, Munakata K, et al. (1996). Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc. Natl. Acad. Sci. U. S. A. 93: 12406-12411.
13. Keyte AL, Percifield R, Liu B and Wendel JF (2006). Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J. Hered. 97: 444-450.
14. Li Y, Shan X, Liu X, Hu L, et al. (2008). Utility of the methylation-sensitive amplified polymorphism (MSAP) marker for detection of DNA methylation polymorphism and epigenetic population structure in a wild barley species (Hordeum brevisubulatum). Ecol. Res. 23: 927-930.
15. Lira-Medeiros CF, Parisod C, Fernandes RA, Mata CS, et al. (2010). Epigenetic variation in mangrove plants occurring in contrasting natural environment. PLoS. One. 5: e10326.
16. Lukens LN, Pires CJ, Leon E, Vogelzang R, et al. (2006). Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol. 140: 336-348.
17. Pang C, Du X and Ma Z (2006). Evaluation of the introgressed lines and screening for elite germplasm in Gossypium. Chin. Sci. Bull. 51: 304-312.
18. Paterson AH, Brubaker CL and Wendel JF (1993). A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol. Biol. Rep. 11: 122-127.
19. Rapp RA and Wendel JF (2005). Epigenetics and plant evolution. New Phytol. 168: 81-91.
20. Rohlf FJ (2009). NTSYSpc: Numerical Taxonomy System. Ver. 2.21c. Exeter Software: Setauket, New York.
21. Ruiz-Garcia L, Cervera MT and Martinez-Zapater JM (2005). DNA methylation increases throughout Arabidopsis development. Planta 222: 301-306.
22. Salmon A, Clotault J, Jenczewski E, Chable V, et al. (2008). Brassica oleracea displays a high level of DNA methylation polymorphism. Plant Sci. 174: 61-70.
23. Shaked H, Kashkush K, Ozkan H, Feldman M, et al. (2001). Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13: 1749-1759.
24. Vos P, Hogers R, Bleeker M, Reijans M, et al. (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
25. Wendel JF, Brubaker CL and Percival AE (1992). Genetic diversity in Gossypium hirsutum and the origin of upland cotton. Am. J. Bot. 79: 1291-1310.
26. Xu M, Li XQ and Korban SS (2000). AFLP-Based detection of DNA methylation. Plant Mol. Biol. Rep. 18: 361-368.
27. Xu Y, Zhong L, Wu X, Fang X, et al. (2009). Rapid alterations of gene expression and cytosine methylation in newly synthesized Brassica napus allopolyploids. Planta 229: 471-483.
28. Zhang MS, Yan HY, Zhao N, Lin XY, et al. (2007). Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids. Theor. Appl. Genet. 115: 195-207.