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Volumn 174, Issue 1, 2008, Pages 61-70

Brassica oleracea displays a high level of DNA methylation polymorphism

Author keywords

Brassica genome; Cytosine methylation; MSAP; Phenotypic diversity; Polymorphic methylation patterns

Indexed keywords

BRASSICA; BRASSICA OLERACEA; BRASSICA OLERACEA VAR. CAPITATA;

EID: 36148957919     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2007.09.012     Document Type: Article
Times cited : (130)

References (54)
  • 1
    • 0036733675 scopus 로고    scopus 로고
    • Chromatin modification and epigenetic reprogramming in mammalian development
    • Li E. Chromatin modification and epigenetic reprogramming in mammalian development. Nat. Rev. Genet. 3 (2002) 662-673
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 662-673
    • Li, E.1
  • 2
    • 0035839055 scopus 로고    scopus 로고
    • DNA methylation and epigenetic inheritance in plants and filamentous fungi
    • Martienssen R.A., and Colot V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293 (2001) 1070-1074
    • (2001) Science , vol.293 , pp. 1070-1074
    • Martienssen, R.A.1    Colot, V.2
  • 3
    • 0033539183 scopus 로고    scopus 로고
    • An epigenetic mutation responsible for natural variation in floral symmetry
    • Cubas P., Vincent C., and Coen E. An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401 (1999) 157-161
    • (1999) Nature , vol.401 , pp. 157-161
    • Cubas, P.1    Vincent, C.2    Coen, E.3
  • 4
    • 2942598781 scopus 로고    scopus 로고
    • Epialleles via DNA methylation: consequences for plant evolution
    • Kalisz S., and Purugganan M.D. Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol. Evol. 19 (2004) 309-314
    • (2004) Trends Ecol. Evol. , vol.19 , pp. 309-314
    • Kalisz, S.1    Purugganan, M.D.2
  • 5
    • 29644435144 scopus 로고    scopus 로고
    • Epigenetics and plant evolution
    • Rapp R.A., and Wendel J.F. Epigenetics and plant evolution. New Phytol. 168 (2005) 81-91
    • (2005) New Phytol. , vol.168 , pp. 81-91
    • Rapp, R.A.1    Wendel, J.F.2
  • 6
    • 33645832572 scopus 로고    scopus 로고
    • Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
    • Lukens L.N., Pires J.C., Leon E., Vogelzang R., Oslach L., and Osborn T. Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol. 140 (2006) 336-348
    • (2006) Plant Physiol. , vol.140 , pp. 336-348
    • Lukens, L.N.1    Pires, J.C.2    Leon, E.3    Vogelzang, R.4    Oslach, L.5    Osborn, T.6
  • 7
    • 0035984262 scopus 로고    scopus 로고
    • Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids
    • Madlung A., Masuelli R.W., Watson B., Reynolds S.H., Davison J., and Comai L. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol. 129 (2002) 733-746
    • (2002) Plant Physiol. , vol.129 , pp. 733-746
    • Madlung, A.1    Masuelli, R.W.2    Watson, B.3    Reynolds, S.H.4    Davison, J.5    Comai, L.6
  • 8
    • 16344367626 scopus 로고    scopus 로고
    • Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
    • Salmon A., Ainouche M.L., and Wendel J.F. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol. Ecol. 14 (2005) 1163-1175
    • (2005) Mol. Ecol. , vol.14 , pp. 1163-1175
    • Salmon, A.1    Ainouche, M.L.2    Wendel, J.F.3
  • 9
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H., Kashkush K., Ozkan H., Feldman M., and Levy A.A. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13 (2001) 1749-1759
    • (2001) Plant Cell , vol.13 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 10
    • 0034879460 scopus 로고    scopus 로고
    • Polyploid formation in cotton is not accompanied by rapid genomic changes
    • Liu B., Brubaker C.L., Mergeai G., Cronn R.C., and Wendel J.F. Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44 (2001) 321-330
    • (2001) Genome , vol.44 , pp. 321-330
    • Liu, B.1    Brubaker, C.L.2    Mergeai, G.3    Cronn, R.C.4    Wendel, J.F.5
  • 11
    • 0033005346 scopus 로고    scopus 로고
    • Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique
    • Xiong L.Z., Xu C.G., Maroof M.A.S., and Zhang Q.F. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol. Gen. Genet. 261 (1999) 439-446
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 439-446
    • Xiong, L.Z.1    Xu, C.G.2    Maroof, M.A.S.3    Zhang, Q.F.4
  • 12
    • 0242669968 scopus 로고    scopus 로고
    • Antibiotic-induced DNA methylation changes in calluses of Arabidopsis thaliana
    • Bardini M., Labra M., Winfield M., and Sala F. Antibiotic-induced DNA methylation changes in calluses of Arabidopsis thaliana. Plant Cell Tissue Organ Cult. 72 (2003) 157-162
    • (2003) Plant Cell Tissue Organ Cult. , vol.72 , pp. 157-162
    • Bardini, M.1    Labra, M.2    Winfield, M.3    Sala, F.4
  • 13
    • 1942520183 scopus 로고    scopus 로고
    • Search for methylation-sensitive amplification polymorphisms associated with the "mantled" variant phenotype in oil palm (Elaeis guineensis Jacq.)
    • Jaligot E., Beule T., Baurens F.C., Billotte N., and Rival A. Search for methylation-sensitive amplification polymorphisms associated with the "mantled" variant phenotype in oil palm (Elaeis guineensis Jacq.). Genome 47 (2004) 224-228
    • (2004) Genome , vol.47 , pp. 224-228
    • Jaligot, E.1    Beule, T.2    Baurens, F.C.3    Billotte, N.4    Rival, A.5
  • 14
    • 0034901448 scopus 로고    scopus 로고
    • Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP)
    • Peraza-Echeverria S., Herrera-Valencia V.A., and James-Kay A. Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP). Plant Sci. 161 (2001) 359-367
    • (2001) Plant Sci. , vol.161 , pp. 359-367
    • Peraza-Echeverria, S.1    Herrera-Valencia, V.A.2    James-Kay, A.3
  • 15
    • 23044500268 scopus 로고    scopus 로고
    • Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis
    • Sha A.H., Lin X.H., Huang J.B., and Zhang D.P. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis. Mol. Gen. Genet. 273 (2005) 484-490
    • (2005) Mol. Gen. Genet. , vol.273 , pp. 484-490
    • Sha, A.H.1    Lin, X.H.2    Huang, J.B.3    Zhang, D.P.4
  • 16
    • 34249960658 scopus 로고
    • Brassica taxonomy based on nuclear restriction fragment length polymorphism (RFLPs). 3. Genome relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris)
    • Song K.M., Osborn T.C., and Williams P.H. Brassica taxonomy based on nuclear restriction fragment length polymorphism (RFLPs). 3. Genome relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris). Theor. Appl. Genet. 79 (1990) 497-506
    • (1990) Theor. Appl. Genet. , vol.79 , pp. 497-506
    • Song, K.M.1    Osborn, T.C.2    Williams, P.H.3
  • 17
  • 18
    • 0002507887 scopus 로고
    • Taxonomy, cytogenetics and origin of crop Brassica, a review
    • Prakash S., and Hinata K. Taxonomy, cytogenetics and origin of crop Brassica, a review. Oper. Bot. 55 (1980) 1-59
    • (1980) Oper. Bot. , vol.55 , pp. 1-59
    • Prakash, S.1    Hinata, K.2
  • 19
    • 0011210376 scopus 로고
    • The wild forms of the Brassica oleracea group (2n = 18) and their possible relations to the cultivated ones
    • Hinata T.S., and Gomez-Campo K. (Eds), Japan Scientific Societies Press, Tokyo
    • Snogerup S. The wild forms of the Brassica oleracea group (2n = 18) and their possible relations to the cultivated ones. In: Hinata T.S., and Gomez-Campo K. (Eds). Brassica Crops and Wild Allies, Biology and Breeding (1980), Japan Scientific Societies Press, Tokyo 121-132
    • (1980) Brassica Crops and Wild Allies, Biology and Breeding , pp. 121-132
    • Snogerup, S.1
  • 20
    • 0033060278 scopus 로고    scopus 로고
    • RAPD markers on seed bulks efficiently assess the genetic diversity of a Brassica oleracea L-collection
    • Divaret I., Margale E., and Thomas G. RAPD markers on seed bulks efficiently assess the genetic diversity of a Brassica oleracea L-collection. Theor. Appl. Genet. 98 (1999) 1029-1035
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 1029-1035
    • Divaret, I.1    Margale, E.2    Thomas, G.3
  • 21
    • 0001613972 scopus 로고
    • Generation of a Brassica oleracea composite RFLP map-linkage arrangements among various populations and evolutionary implications
    • Kianian S.F., and Quiros C.F. Generation of a Brassica oleracea composite RFLP map-linkage arrangements among various populations and evolutionary implications. Theor. Appl. Genet. 84 (1992) 544-554
    • (1992) Theor. Appl. Genet. , vol.84 , pp. 544-554
    • Kianian, S.F.1    Quiros, C.F.2
  • 23
    • 0002669347 scopus 로고
    • Linkage arrangement of restriciton fragment length polymorphism loci in Brassica oleracea
    • Slocum M.K., Figdore S.S., Kennard W.C., Suzuky J.Y., and Osborn T.C. Linkage arrangement of restriciton fragment length polymorphism loci in Brassica oleracea. Theor. Appl. Genet. 80 (1990) 57-64
    • (1990) Theor. Appl. Genet. , vol.80 , pp. 57-64
    • Slocum, M.K.1    Figdore, S.S.2    Kennard, W.C.3    Suzuky, J.Y.4    Osborn, T.C.5
  • 25
    • 0030889065 scopus 로고    scopus 로고
    • Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms
    • Reyna-Lopez G.E., Simpson J., and Ruiz-Herrera J. Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol. Gen. Genet. 253 (1997) 703-710
    • (1997) Mol. Gen. Genet. , vol.253 , pp. 703-710
    • Reyna-Lopez, G.E.1    Simpson, J.2    Ruiz-Herrera, J.3
  • 26
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle J.J., and Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 12 (1990) 13-15
    • (1990) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 27
    • 0035175516 scopus 로고    scopus 로고
    • REBASE-restriction enzymes and methylases
    • Roberts R.J., and Macelis D. REBASE-restriction enzymes and methylases. Nucleic Acids Res. 29 (2001) 268-269
    • (2001) Nucleic Acids Res. , vol.29 , pp. 268-269
    • Roberts, R.J.1    Macelis, D.2
  • 28
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial DNA restriction data
    • Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial DNA restriction data. Genetics 131 (1992) 479-491
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 30
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display phylogenetic trees on personnal computers
    • Page R. TREEVIEW: an application to display phylogenetic trees on personnal computers. Comput. Appl. Biosci. 12 (1996) 357-358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.1
  • 31
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
    • (1967) Cancer Res. , vol.27 , pp. 209-220
    • Mantel, N.1
  • 32
    • 0035117367 scopus 로고    scopus 로고
    • Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars
    • Ashikawa I. Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars. Plant Mol. Biol. 45 (2001) 31-39
    • (2001) Plant Mol. Biol. , vol.45 , pp. 31-39
    • Ashikawa, I.1
  • 33
    • 0036456019 scopus 로고    scopus 로고
    • Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers
    • Cervera M.T., Ruiz-Garcia L., and Martinez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol. Genet. Gen. 268 (2002) 543-552
    • (2002) Mol. Genet. Gen. , vol.268 , pp. 543-552
    • Cervera, M.T.1    Ruiz-Garcia, L.2    Martinez-Zapater, J.M.3
  • 34
    • 3242723316 scopus 로고    scopus 로고
    • DNA methylation and epigenetics
    • Bender J. DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55 (2004) 41-68
    • (2004) Annu. Rev. Plant Biol. , vol.55 , pp. 41-68
    • Bender, J.1
  • 36
  • 38
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • Jackson J.P., Lindroth A.M., Cao X.F., and Jacobsen S.E. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416 (2002) 556-560
    • (2002) Nature , vol.416 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.F.3    Jacobsen, S.E.4
  • 39
    • 0037143444 scopus 로고    scopus 로고
    • Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation
    • Johnson L.M., Cao X.F., and Jacobsen S.E. Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation. Curr. Biol. 12 (2002) 1360-1367
    • (2002) Curr. Biol. , vol.12 , pp. 1360-1367
    • Johnson, L.M.1    Cao, X.F.2    Jacobsen, S.E.3
  • 41
    • 4644312235 scopus 로고    scopus 로고
    • The role of RNA interference in heterochromatic silencing
    • Lippman Z., and Martienssen R. The role of RNA interference in heterochromatic silencing. Nature 431 (2004) 364-370
    • (2004) Nature , vol.431 , pp. 364-370
    • Lippman, Z.1    Martienssen, R.2
  • 42
    • 26444479664 scopus 로고    scopus 로고
    • DNA methylation increases throughout Arabidopsis development
    • Ruiz-Garcia L., Cervera M.T., and Martinez-Zapater J.M. DNA methylation increases throughout Arabidopsis development. Planta 222 (2005) 301-306
    • (2005) Planta , vol.222 , pp. 301-306
    • Ruiz-Garcia, L.1    Cervera, M.T.2    Martinez-Zapater, J.M.3
  • 43
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • Lagercrantz U. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150 (1998) 1217-1228
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 44
    • 0038192129 scopus 로고    scopus 로고
    • Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana
    • Lukens L., Zou F., Lydiate D., Parkin I., and Osborn T. Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164 (2003) 359-372
    • (2003) Genetics , vol.164 , pp. 359-372
    • Lukens, L.1    Zou, F.2    Lydiate, D.3    Parkin, I.4    Osborn, T.5
  • 45
    • 1542285163 scopus 로고    scopus 로고
    • A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
    • Lawrence R.J., Earley K., Pontes O., Silva M., Chen Z.J., Neves N., Viegas W., and Pikaard C.S. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol. Cell 13 (2004) 599-609
    • (2004) Mol. Cell , vol.13 , pp. 599-609
    • Lawrence, R.J.1    Earley, K.2    Pontes, O.3    Silva, M.4    Chen, Z.J.5    Neves, N.6    Viegas, W.7    Pikaard, C.S.8
  • 46
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • Thomas B.C., Pedersen B., and Freeling M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16 (2006) 934-946
    • (2006) Genome Res. , vol.16 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 48
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
    • Yang Y.W., Lai K.N., Tai P.Y., and Li W.H. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J. Mol. Evol. 48 (1999) 597-604
    • (1999) J. Mol. Evol. , vol.48 , pp. 597-604
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Li, W.H.4
  • 49
    • 1842681942 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
    • Zhang X.Y., and Wessler S.R. Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 5589-5594
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 5589-5594
    • Zhang, X.Y.1    Wessler, S.R.2
  • 50
    • 0034103860 scopus 로고    scopus 로고
    • Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
    • Hirochika H., Okamoto H., and Kakutani T. Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12 (2000) 357-368
    • (2000) Plant Cell , vol.12 , pp. 357-368
    • Hirochika, H.1    Okamoto, H.2    Kakutani, T.3
  • 51
    • 0037418586 scopus 로고    scopus 로고
    • Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis
    • Kato M., Miura A., Bender J., Jacobsen S.E., and Kakutani T. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr. Biol. 13 (2003) 421-426
    • (2003) Curr. Biol. , vol.13 , pp. 421-426
    • Kato, M.1    Miura, A.2    Bender, J.3    Jacobsen, S.E.4    Kakutani, T.5
  • 52
    • 34248145207 scopus 로고    scopus 로고
    • Intra-specific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)
    • Keyte A.L., Percifield R., Liu B., and Wendel J.F. Intra-specific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J. Heredity 97 (2006) 444-450
    • (2006) J. Heredity , vol.97 , pp. 444-450
    • Keyte, A.L.1    Percifield, R.2    Liu, B.3    Wendel, J.F.4
  • 53
    • 0030902720 scopus 로고    scopus 로고
    • Mutagenic and epigenetic effects of DNA methylation
    • Gonzalgo M.L., and Jones P.A. Mutagenic and epigenetic effects of DNA methylation. Mutat. Res. Rev. Mutat. Res. 386 (1997) 107-118
    • (1997) Mutat. Res. Rev. Mutat. Res. , vol.386 , pp. 107-118
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 54
    • 0004168520 scopus 로고
    • International Plant Genetic Resources Institute, Rome
    • IPGRI. Descriptors for Brassica and Raphanus (1990), International Plant Genetic Resources Institute, Rome
    • (1990) Descriptors for Brassica and Raphanus
    • IPGRI1


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